Systematics Agenda 2000: an historical perspective

The publication of Systematics Agenda 2000 in February, 1994 represented an historic event in the collaboration of the systematic biology community designed to set a research agenda for a twenty five year period across the areas of basic and applied systematics. How the community came to take the initiative to produce such a consensus is outlined. Of special interest is the emergence of the Systematics Agenda 2000 initiative from a North American perspective to a truly global enterprise.     

Biodiversity loss and the taxonomic bottleneck: emerging biodiversity science

Human domination of the Earth has resulted in dramatic changes to global and local patterns of biodiversity. Biodiversity is critical to human sustainability because it drives the ecosystem services that provide the core of our life-support system. As we, the human species, are the primary factor leading to the decline in biodiversity, we need detailed information about the biodiversity and species composition of specific locations in order to understand how different species contribute to ecosystem services and how humans can sustainably conserve and manage biodiversity. Taxonomy and ecology, two fundamental sciences that generate the knowledge about biodiversity, are associated with a number of limitations that prevent them from providing the information needed to fully understand the relevance of biodiversity in its entirety for human sustainability: (1) biodiversity conservation strategies that tend to be overly focused on research and policy on a global scale with little impact on local biodiversity; (2) the small knowledge base of extant global biodiversity; (3) a lack of much-needed site-specific data on the species composition of communities in human-dominated landscapes, which hinders ecosystem management and biodiversity conservation; (4) biodiversity studies with a lack of taxonomic precision; (5) a lack of taxonomic expertise and trained taxonomists; (6) a taxonomic bottleneck in biodiversity inventory and assessment; and (7) neglect of taxonomic resources and a lack of taxonomic service infrastructure for biodiversity science. These limitations are directly related to contemporary trends in research, conservation strategies, environmental stewardship, environmental education, sustainable development, and local site-specific conservation. Today’s biological knowledge is built on the known global biodiversity, which represents barely 20% of what is currently extant (commonly accepted estimate of 10 million species) on planet Earth. Much remains unexplored and unknown, particularly in hotspots regions of Africa, South Eastern Asia, and South and Central America, including many developing or underdeveloped countries, where localized biodiversity is scarcely studied or described. "Backyard biodiversity", defined as local biodiversity near human habitation, refers to the natural resources and capital for ecosystem services at the grassroots level, which urgently needs to be explored, documented, and conserved as it is the backbone of sustainable economic development in these countries. Beginning with early identification and documentation of local flora and fauna, taxonomy has documented global biodiversity and natural history based on the collection of "backyard biodiversity" specimens worldwide. However, this branch of science suffered a continuous decline in the latter half of the twentieth century, and has now reached a point of potential demise. At present there are very few professional taxonomists and trained local parataxonomists worldwide, while the need for, and demands on, taxonomic services by conservation and resource management communities are rapidly increasing. Systematic collections, the material basis of biodiversity information, have been neglected and abandoned, particularly at institutions of higher learning. Considering the rapid increase in the human population and urbanization, human sustainability requires new conceptual and practical approaches to refocusing and energizing the study of the biodiversity that is the core of natural resources for sustainable development and biotic capital for sustaining our life-support system. In this paper we aim to document and extrapolate the essence of biodiversity, discuss the state and nature of taxonomic demise, the trends of recent biodiversity studies, and suggest reasonable approaches to a biodiversity science to facilitate the expansion of global biodiversity knowledge and to create useful data on backyard biodiversity worldwide towards human sustainability.     

The impact of global climate change on tropical forest biodiversity in Amazonia

Aim To model long‐term trends in plant species distributions in response to predicted changes in global climate. Location Amazonia. Methods The impacts of expected global climate change on the potential and realized distributions of a representative sample of 69 individual Angiosperm species in Amazonia were simulated from 1990 to 2095. The climate trend followed the HADCM2GSa1 scenario, which assumes an annual 1% increase of atmospheric CO₂ content with effects mitigated by sulphate forcing. Potential distributions of species in one‐degree grid cells were modelled using a suitability index and rectilinear envelope based on bioclimate variables. Realized distributions were additionally limited by spatial contiguity with, and proximity to, known record sites. A size‐structured population model was simulated for each cell in the realized distributions to allow for lags in response to climate change, but dispersal was not included. Results In the resulting simulations, 43% of all species became non‐viable by 2095 because their potential distributions had changed drastically, but there was little change in the realized distributions of most species, owing to delays in population responses. Widely distributed species with high tolerance to environmental variation exhibited the least response to climate change, and species with narrow ranges and short generation times the greatest. Climate changed most in north‐east Amazonia while the best remaining conditions for lowland moist forest species were in western Amazonia. Main conclusions To maintain the greatest resilience of Amazonian biodiversity to climate change as modelled by HADCM2GSa1, highest priority should be given to strengthening and extending protected areas in western Amazonia that encompass lowland and montane forests.     

A new system for understanding the biodiversity in different nature reserves: capacity, connectivity and quality of biodiversity

In this paper, we propose a new system for understanding the biodiversity in different conservation areas. It includes three aspects: the capacity, the connectivity and the quality. The capacity refers to the numbers of biodiversity, including absolute and relative richness of the vegetation types N _v and D _v =(N _v −1)/lnA, species numbers S and richness of species d _Gl =(S − 1)/lnA, and germ plasm resources within a nature reserve, and also the potential biological living space offered by the natural resource. It comprises the total biological resources in a nature reserve. The connectivity refers to the flux of biodiversity, including similarity and connected status of the vegetation types SI _Li =2z/(x + y) and species numbers SI _C =2z/(x + y) among different nature reserves. The quality refers to the stability of biodiversity, including relative species richness index RS _Li =d/d _max, relative vegetation richness index RV _Li =D _v /D _maxv , fastness to invasion species ƒ _Li =1−S _i /S _t , weighted values, representativeness and vulnerability of special vegetations, special species, CITES species and rare species as the protected targets.     

A new system for understanding the biodiversity in different nature reserves:capacity,connectivity and quality of biodiversity

In this paper,we propose a new system for understanding the biodiversity in different conservation areas.It includes three aspects:the capacity,the connectivity and the quality.The capacity refers to the numbers of biodiversity,including absolute and relative richness of the vegetation types Nv and Dv = (Nv-1)/lnA,species numbers S and richness of species dGI = (S- 1)/lnA,and germ plasm resources within a nature reserve,and also the potential biological living space offered by the natural resource.It comprises the total biological resources in a nature reserve.The connectivity refers to the flux of biodiversity,including similarity and connected status of the vegetation types SILi = 2z/(x + y) and species numbers SIc = 2z/(x + y) among different nature reserves.The quality refers to the stability of biodiversity,including relative species richness index RSLi = d/dmax,relative vegetation richness index RVLi =Dv/Dmaxv,fastness to invasion species fLi = 1-Si/St,weighted values,representativeness and vulnerability of special vegetations,special species,CITES species and rare species as the protected targets.     

A suite of essential biodiversity variables for detecting critical biodiversity change

Key global indicators of biodiversity decline, such as the IUCN Red List Index and the Living Planet Index, have relatively long assessment intervals. This means they, due to their inherent structure, function as late‐warning indicators that are retrospective, rather than prospective. These indicators are unquestionably important in providing information for biodiversity conservation, but the detection of early‐warning signs of critical biodiversity change is also needed so that proactive management responses can be enacted promptly where required. Generally, biodiversity conservation has dealt poorly with the scattered distribution of necessary detailed information, and needs to find a solution to assemble, harmonize and standardize the data. The prospect of monitoring essential biodiversity variables (EBVs) has been suggested in response to this challenge. The concept has generated much attention, but the EBVs themselves are still in development due to the complexity of the task, the limited resources available, and a lack of long‐term commitment to maintain EBV data sets. As a first step, the scientific community and the policy sphere should agree on a set of priority candidate EBVs to be developed within the coming years to advance both large‐scale ecological research as well as global and regional biodiversity conservation. Critical ecological transitions are of high importance from both a scientific as well as from a conservation policy point of view, as they can lead to long‐lasting biodiversity change with a high potential for deleterious effects on whole ecosystems and therefore also on human well‐being. We evaluated candidate EBVs using six criteria: relevance, sensitivity to change, generalizability, scalability, feasibility, and data availability and provide a literature‐based review for eight EBVs with high sensitivity to change. The proposed suite of EBVs comprises abundance, allelic diversity, body mass index, ecosystem heterogeneity, phenology, range dynamics, size at first reproduction, and survival rates. The eight candidate EBVs provide for the early detection of critical and potentially long‐lasting biodiversity change and should be operationalized as a priority. Only with such an approach can science predict the future status of global biodiversity with high certainty and set up the appropriate conservation measures early and efficiently. Importantly, the selected EBVs would address a large range of conservation issues and contribute to a total of 15 of the 20 Aichi targets and are, hence, of high biological relevance.     

The Impact of Molecular Methods on the Systematics of Angiosperms

A comparison is made between the systematics of selected orders and families based on morphology and other “classical” characters on the one hand, and the results of molecular methods on the other hand. It can be shown that taxa defined by a broad array of characters from morphology, anatomy, embryology and phytochemistry usually are confirmed by molecular results. On the other hand a family like the Saxifragaceae s.l. delimited solely on the basis of floral morphology has been shown to be grossly polyphyletic. Some quite surprising results of the molecular analyses usually agree with some embryological or phytochemical characters, and sometimes even with characters of vegetative morphology and anatomy. As a special case “unequal ancient splits” are discussed, where one clade contains few genera and species usually retaining many primitive characters, and the other shows great diversity and contains the more advanced members.     

Projected range contractions of montane biodiversity under global warming

Mountains, especially in the tropics, harbour a unique and large portion of the world''s biodiversity. Their geographical isolation, limited range size and unique environmental adaptations make montane species potentially the most threatened under impeding climate change. Here, we provide a global baseline assessment of geographical range contractions and extinction risk of high-elevation specialists in a future warmer world. We consider three dispersal scenarios for simulated species and for the world''s 1009 montane bird species. Under constrained vertical dispersal (VD), species with narrow vertical distributions are strongly impacted; at least a third of montane bird diversity is severely threatened. In a scenario of unconstrained VD, the location and structure of mountain systems emerge as a strong driver of extinction risk. Even unconstrained lateral movements offer little improvement to the fate of montane species in the Afrotropics, Australasia and Nearctic. Our results demonstrate the particular roles that the geography of species richness, the spatial structure of lateral and particularly vertical range extents and the specific geography of mountain systems have in determining the vulnerability of montane biodiversity to climate change. Our findings confirm the outstanding levels of biotic perturbation and extinction risk that mountain systems are likely to experience under global warming and highlight the need for additional knowledge on species'' vertical distributions, dispersal and adaptive capacities.     

Traits,trees and taxa: global dimensions of biodiversity in mammals

Measures of biodiversity encompass variation along several dimensions such as species richness (SR), phylogenetic diversity (PD) and functional/trait diversity (TD). At the global scale, it is widely recognized that SR and PD are strongly correlated, but the extent to which either tends to capture variation in TD is unclear. Here, we assess relationships among PD, SR and TD for a number of traits both across clades and regional assemblages of mammals. We also contrast results using two different measures of TD, trait variance and a new measure we refer to as trait bin filling (the number of orders of magnitude of variation that contain at least one species). When TD is defined as trait variance, PD is a much stronger correlate of TD than SR across clades, consistent with hypotheses about the conservation value of PD. However, when TD is defined as bin filling, PD and SR show similar correlations with TD across clades and space. We also investigate potential losses of SR, PD and TD if species that are currently threatened were to go extinct, and find that threatened PD is often a similar predictor of threatened TD as SR.     

Four barriers to the global understanding of biodiversity conservation: wealth,language, geographical location and security

Global biodiversity conservation is seriously challenged by gaps and heterogeneity in the geographical coverage of existing information. Nevertheless, the key barriers to the collection and compilation of biodiversity information at a global scale have yet to be identified. We show that wealth, language, geographical location and security each play an important role in explaining spatial variations in data availability in four different types of biodiversity databases. The number of records per square kilometre is high in countries with high per capita gross domestic product (GDP), high proportion of English speakers and high security levels, and those located close to the country hosting the database; but these are not necessarily countries with high biodiversity. These factors are considered to affect data availability by impeding either the activities of scientific research or active international communications. Our results demonstrate that efforts to solve environmental problems at a global scale will gain significantly by focusing scientific education, communication, research and collaboration in low-GDP countries with fewer English speakers and located far from Western countries that host the global databases; countries that have experienced conflict may also benefit. Findings of this study may be broadly applicable to other fields that require the compilation of scientific knowledge at a global level.     

The origins of modern biodiversity on land

Comparative studies of large phylogenies of living and extinct groups have shown that most biodiversity arises from a small number of highly species-rich clades. To understand biodiversity, it is important to examine the history of these clades on geological time scales. This is part of a distinct 'phylogenetic expansion' view of macroevolution, and contrasts with the alternative, non-phylogenetic 'equilibrium' approach to the history of biodiversity. The latter viewpoint focuses on density-dependent models in which all life is described by a single global-scale model, and a case is made here that this approach may be less successful at representing the shape of the evolution of life than the phylogenetic expansion approach. The terrestrial fossil record is patchy, but is adequate for coarse-scale studies of groups such as vertebrates that possess fossilizable hard parts. New methods in phylogenetic analysis, morphometrics and the study of exceptional biotas allow new approaches. Models for diversity regulation through time range from the entirely biotic to the entirely physical, with many intermediates. Tetrapod diversity has risen as a result of the expansion of ecospace, rather than niche subdivision or regional-scale endemicity resulting from continental break-up. Tetrapod communities on land have been remarkably stable and have changed only when there was a revolution in floras (such as the demise of the Carboniferous coal forests, or the Cretaceous radiation of angiosperms) or following particularly severe mass extinction events, such as that at the end of the Permian.     

A global model of the response of tropical and sub-tropical forest biodiversity to anthropogenic pressures

Habitat loss and degradation, driven largely by agricultural expansion and intensification, present the greatest immediate threat to biodiversity. Tropical forests harbour among the highest levels of terrestrial species diversity and are likely to experience rapid land-use change in the coming decades. Synthetic analyses of observed responses of species are useful for quantifying how land use affects biodiversity and for predicting outcomes under land-use scenarios. Previous applications of this approach have typically focused on individual taxonomic groups, analysing the average response of the whole community to changes in land use. Here, we incorporate quantitative remotely sensed data about habitats in, to our knowledge, the first worldwide synthetic analysis of how individual species in four major taxonomic groups—invertebrates, ‘herptiles’ (reptiles and amphibians), mammals and birds—respond to multiple human pressures in tropical and sub-tropical forests. We show significant independent impacts of land use, human vegetation offtake, forest cover and human population density on both occurrence and abundance of species, highlighting the value of analysing multiple explanatory variables simultaneously. Responses differ among the four groups considered, and—within birds and mammals—between habitat specialists and habitat generalists and between narrow-ranged and wide-ranged species.     

Mass digitization of scientific collections: New opportunities to transform the use of biological specimens and underwrite biodiversity science

New information technologies have enabled the scientific collections community and its stakeholders to adapt, adopt, and leverage novel approaches for a nearly 300 years old scientific discipline. Now, few can credibly question the transformational impact of technology on efforts to digitize scientific collections, as IT now reaches into almost every nook and cranny of society. Five to ten years ago this was not the case. Digitization is an activity that museums and academic institutions increasingly recognize, though many still do not embrace, as a means to boost the impact of collections to research and society through improved access. The acquisition and use of scientific collections is a global endeavor, and digitization enhances their value by improved access to core biodiversity information, increases use, relevance and potential downstream value, for example, in the management of natural resources, policy development, food security, and planetary and human health. This paper examines new opportunities to design and implement infrastructure that will support not just mass digitization efforts, but also a broad range of research on biological diversity and physical sciences in order to make scientific collections increasingly relevant to societal needs and interest.     

Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT

This paper discusses the design and implementation of a citizen science pilot project, COMBER (Citizens' Network for the Observation of Marine BiodivERsity, http://www.comber.hcmr.gr), which has been initiated under the ViBRANT EU e-infrastructure. It is designed and implemented for divers and snorkelers who are interested in participating in marine biodiversity citizen science projects. It shows the necessity of engaging the broader community in the marine biodiversity monitoring and research projects, networks and initiatives. It analyses the stakeholders, the industry and the relevant markets involved in diving activities and their potential to sustain these activities. The principles, including data policy and rewards for the participating divers through their own data, upon which this project is based are thoroughly discussed. The results of the users analysis and lessons learned so far are presented. Future plans include promotion, links with citizen science web developments, data publishing tools, and development of new scientific hypotheses to be tested by the data collected so far.     

Assessing the biodiversity benefits of plantations: The Plantation Biodiversity Benefits Score

Summary   All forests, including commercial plantations, provide a range of habitats for conserving and enhancing elements of native biodiversity. However, the biodiversity values of commercial plantations will depend on the management practices adopted on site, as well as the landscape context of the plantation. The present study describes a generic, quantitative method for assessing the potential biodiversity benefits that might be derived from a plantation, depending on the management practices adopted. This method is based on existing ecological design and management principles. The Plantation Biodiversity Benefits Score (PBBS) was designed to be repeatable and practical to apply. The method can be used either as a stand-alone tool or as part of an integrated framework to assess and compare the commercial and environmental benefits that can be derived from different layouts, management practices and locations of plantations anywhere in Australia.     

福建植物生物多样性的特点及其生物安全问题

对福建植物生物多样性从物种多样性、遗传多样性和生态系统多样性三个层面进行了评价,分析了植物生物多样性的特点。在此基础上提出了影响福建植物生物多样性的主要生物安全问题。研究表明,福建植物生物多样性具有植物种类丰富,热带和亚热带的科属种类多、起源古老,中国特有成分比例较高和国家重点保护植物较为丰富等特点。影响植物生物多样性的主要生物安全问题包括阔叶林面积不断减少,森林资源总体质量下降;濒危野生植物比重增大,名木古树破坏严重;外来物种入侵呈加重趋势。     

盐城滩涂生物多样性保护及其可持续利用

论述了盐城滩涂的自然概况和动植物资源,分析了生物多样性保护和利用过程中取得的成绩和存在的不足,针对所存在的问题提出了盐城滩涂生物多样性保护及其可持续利用的对策,包括深入开展生物多样性资源的调查和研究,注重滩涂湿地生态环境的保护和改造,加强自然保护区的建设和管理,以科技进步促进生物多样性的保护和利用,围绕资源保护和持续利用实施滩涂开发。     

The search for common anthropogenic impacts on biodiversity: a global network

We introduce an initiative to assess and compare landscape changes related to human activities on a global scale, using a single group of invertebrates. The GLOBENET programme uses common field methodology (pitfall trapping), to appraise assemblages of ground beetles (Coleoptera, Carabidae) in visually-similar land-mosaics (urban-rural gradients). Carabids were selected as the focal taxon as they are sufficiently varied (both taxonomically and ecologically), abundant and sensitive to the environment. However, work on other taxa is comparable with the GLOBENET framework. The continuum of decreasing human pressure from city centres into the surrounding countryside was selected to represent human-caused disturbance for this initial stage of GLOBENET because these gradients can be found virtually all over the world. Through the broad-scale assessment envisioned in the GLOBENET programme, we seek to separate general, repeated effects on biodiversity from those that depend on local environments or particular biotic assemblages. Based on this understanding we aim to develop simple tools and protocols for assessing ecological effects of human-caused landscape changes, which could help to sustainably manage landscapes for biodiversity and for human requirements. For instance, the response of different functional groups of carabids to these landscape changes may help guide management practices. Further GLOBENET developments and information are available at our website: http://www.helsinki.fi/science/globenet/     

The role of climate and plant functional trade‐offs in shaping global biome and biodiversity patterns

Aim Two of the oldest observations in plant geography are the increase in plant diversity from the poles towards the tropics and the global geographic distribution of vegetation physiognomy (biomes). The objective of this paper is to use a process‐based vegetation model to evaluate the relationship between modelled and observed global patterns of plant diversity and the geographic distribution of biomes. Location The global terrestrial biosphere. Methods We implemented and tested a novel vegetation model aimed at identifying strategies that enable plants to grow and reproduce within particular climatic conditions across the globe. Our model simulates plant survival according to the fundamental ecophysiological processes of water uptake, photosynthesis, reproduction and phenology. We evaluated the survival of an ensemble of 10,000 plant growth strategies across the range of global climatic conditions. For the simulated regional plant assemblages we quantified functional richness, functional diversity and functional identity. Results A strong relationship was found (correlation coefficient of 0.75) between the modelled and the observed plant diversity. Our approach demonstrates that plant functional dissimilarity increases and then saturates with increasing plant diversity. Six of the major Earth biomes were reproduced by clustering grid cells according to their functional identity (mean functional traits of a regional plant assemblage). These biome clusters were in fair agreement with two other global vegetation schemes: a satellite image classification and a biogeography model (kappa statistics around 0.4). Main conclusions Our model reproduces the observed global patterns of plant diversity and vegetation physiognomy from the number and identity of simulated plant growth strategies. These plant growth strategies emerge from the first principles of climatic constraints and plant functional trade‐offs. Our study makes important contributions to furthering the understanding of how climate affects patterns of plant diversity and vegetation physiognomy from a process‐based rather than a phenomenological perspective.     

The memory remains: application of historical DNA for scaling biodiversity loss

Few species worldwide have attracted as much attention in relation to conservation and sustainable management as Pacific salmon. Most populations have suffered significant reductions, many have disappeared, and even entire evolutionary significant units (ESUs) are believed to have been lost. Until now, no ‘smoking gun’ in terms of direct genetic evidence of the loss of a salmon ESU has been produced. In this issue of Molecular Ecology, Iwamoto et al. (2012) use microsatellite analysis of historical scale samples of Columbia River sockeye salmon (Oncorhynchus nerka) from 1924 ( Fig. 1 ) to ask the pertinent question: Do the historical samples contain salmon from extirpated populations or ESUs? They identified four genetic groups in the historical samples of which two were almost genetically identical to contemporary ESUs in the river, one showed genetic relationship with a third ESU, but one group was not related to any of the contemporary populations. In association with ecological data, the genetic results suggest that an early migrating Columbia River headwater sockeye salmon ESU has been extirpated. The study has significant importance for conservation and reestablishment of sockeye populations in the Columbia River, but also underpins the general significance of shifting baselines in conservation biology, and how to assess loss of genetic biodiversity. The results clearly illustrate the huge and versatile potential of using historical DNA in population and conservation genetics. Because of the extraordinarily plentiful historical samples and rapid advances in fish genomics, fishes are likely to spearhead future studies of temporal ecological and population genomics in non‐model organisms.

Figure 1 Open in figure viewer PowerPoint (a) Kokanee sampling site between Columbia and Windermere lakes on the upper Columbia River at Fairmont Hot Springs, British Columbia, Canada. (b) Bureau of Fisheries scale books that contained sockeye salmon (locally called ‘blueback’ salmon) scales collected from commercial fisheries during the 1920s in the lower Columbia River. (c) Kokanee on spawning beds in Kuskanax Creek, a tributary to Upper Arrow Lake, British Columbia. Photo credit Rick Gustafson and Jim Myers.