Spatial variation in breeding phenology at small spatial scales: A stochastic effect of population size

Spatial variation in phenology can occur at small spatial scales over which individuals can disperse or forage within one generation. Previous studies have assumed that variations in phenological peaks are caused by differences in abiotic environmental characteristics. However, environments should generally be similar among local habitats over small spatial scales. When the local population size is small, the phenological peak of the local population should be strongly affected by the variation in timing expressed by individuals. If a regional population consists of small local subpopulations (e.g., a metapopulation), the stochastic processes regulated by population sizes may explain the spatial variation in phenology. In this study, we quantitatively evaluated the extent of the spatial and annual variations in the breeding phenology of the forest green tree frog, Rhacophorus arboreus habiting a small area (<10 km²). The spatial variation in phenological peaks among 25 breeding sites was large over 6 years. This spatial variation was not explained by differences in air temperature or water depth. Randomization tests revealed that a large portion of the spatial variation could be explained by differences in population size, without considering site-specific factors. Annual variations in phenological peaks tended to be greater for smaller populations. These results imply that the stochastic process might have caused the spatial and annual variations in the phenological peaks of R. arboreus observed in the study region. Understanding spatiotemporal variation in phenology determined by stochastic process would be important to better predict interspecific interactions and (meta)population dynamics at small spatial scales.     

Fine structures on the surface of nuptial pads of male hylid and rhacophorid frogs

Nuptial pads, secondary sexual characteristics of male frogs, develop on the first digit of the hand of Hyla japonica in the family Hylidae and of Rhacophorus schlegelii in the family Rhacophoridae, and on both the first and second digits of the rhacophorids Buergeria buergeri and B. japonica. By scanning electron microscopy (SEM), it was seen that numerous mounds covered the surface of the pads. Mounds were similarly hemispherical in R. schlegelii and B. buergeri and flat in B. japonica. The mounds of H. japonica were irregular in shape and size and some of them stood in rows. Fine columnar protuberances were present all over the surfaces of the mounds in this species. Numerous peg-like protuberances projected radially upward from the top of the mounds in B. buergeri and B. japonica. Irregular-shaped, leaf-like protuberances bearing knobby or rod-shaped apical protrusions were present on the top of the mounds in R. schlegelii. In pads observed by transmission electron microscopy, the outermost epithelial monolayer of the mounds was generally thick, especially at the top, compared to that of the rest of the skin. Epidermal cells in this layer were well keratinized, devoid of organelles, and contained closely packed, fine filaments within a dense matrix. Apical accessory protuberances projecting from the outermost cells were also packed with dense filamentous materials, showing rigid comb-like structures. © 1994 Wiley-Liss, Inc.     

Female preference for temporal features of vocalization in the Japanese treefrog,Rhacophorus arboreus

Female preference for the different temporal features of advertisement calls by males was studied in the foam-nesting treefrog,Rhacophorus arboreus. Field observations showed that females were attracted to males making more calls, calling in more bouts of vocalization and leading choruses. In phonotactic experiments in the laboratory, however, females were attracted to vocalizations with more total notes while they were not attracted to chorus leaders. alphabetical order     

Phylogenetic resolution and systematics of the Asian tree frogs,Rhacophorus (Rhacophoridae,Amphibia)

Li, J.T., Li, Y., Murphy, R.W., Rao, D.‐Q. & Zhang, Y.‐P. (2012). Phylogenetic resolution and systematics of the Asian tree frogs, Rhacophorus (Rhacophoridae, Amphibia). —Zoologica Scripta, 41, 557–570. The treefrog genus Rhacophorus, a large genus with 80 species, has a wide range, occurring eastward from India to China, Japan, South‐east Asia, the Greater Sunda Islands and the Philippines. The phylogenetic relationships and taxonomic recognition of many species are very controversial. To stabilize the taxonomy, the phylogenetic relationships among about 52 species are investigated from 96 samples using mtDNA sequence data. Matrilineal relationships based on maximum likelihood and Bayesian inference methods resolve three well‐supported lineages (A, B and C), although the phylogenetic relationships among three lineages remain ambiguous. Analyses support recognition of two previously assigned subgenera, Leptomantis and Rhacophorus, and these correspond to lineages A and B, respectively. Given that we have three strongly supported lineages, that these lineages are morphologically distinct, and the constrained geographic distributions of these groups, we recognize each lineage as a taxon. Subgenus Leptomantis includes species mainly from Malaysia, Indonesia and the Philippines. Subgenus Rhacophorus contains a mix of species occurring in India, Indochina and southern China. Lineage C accommodates species distributed mostly in East Asia, including Japan and China. Based on genetic and morphological data from type localities, the taxonomic recognition of some species needs to be reconsidered. Rhacophorus pingbianensis and Polypedates spinus are considered as junior synonyms of Rhacophorus duboisi. Specimens of Rhacophorus rhodopus from Vietnam and Hainan, China likely represent an undescribed, cryptic species.     

Temporal variation in behavioral responses to dietary cues from a gape‐limited predator in tadpole prey: A test of the phylogenetic relatedness hypothesis

The ability of prey to recognize and adequately respond to predators determines their survival. Predator‐borne, post‐digestion dietary cues represent essential information for prey about the identity and the level of risk posed by predators. The phylogenetic relatedness hypothesis posits that prey should respond strongly to dietary cues from closely related heterospecifics but respond weakly to such cues from distantly related prey, following a hierarchical pattern. While such responses have mostly been observed in prey at their first encounter with predators, whether prey maintain such hierarchical levels of investment through time remains unclear. We investigated this question by exposing Rhacophorus arboreus tadpoles to the non‐consumptive effect of gape‐limited newt predators Cynops pyrrhogaster that were fed one of five prey diets across a gradient of phylogenetic relatedness: frog tadpoles (Rhacophorus arboreus, Rhacophorus schlegelii, Pelophylax nigromaculatus, and Hyla japonica) and medaka fish (Oryzias latipes). Predators’ diet, time, and their interaction significantly influenced tadpole activity level. We found support for the phylogenetic relatedness hypothesis: Investments in defense were stronger to cues from tadpole diets than to cues from fish diet. However, such a hierarchical response was recorded only in the first four days following predator exposure, then gradually disappear by day 8 on which the tadpoles exhibited similar activity level across all predator treatments. The findings suggest that, at least under the threat of gape‐limited predators, prey use phylogenetic information to evaluate risk and appropriately invest in defense during early encounters with predators; however, energy requirements may prevent prey from maintaining a high level of defense over long exposure to predation risk.     

Predation of frog eggs by the water strider Gerris latiabdominis Miyamoto (Hemiptera: Gerridae)

Water striders (Hemiptera: Gerridae) are predators found on the water surface that prey mainly on arthropods. The feeding on other organisms (dead vertebrates, fishes and tadpoles) is a rare event. To our knowledge, predation of frog eggs by water striders has not yet been reported. We observed that adult water striders, Gerris latiabdominis Miyamoto, 1958 (Hemiptera: Gerridae), preyed on the eggs of three frog species, Pelophylax nigromaculata Hallowell, 1861 (Anura: Ranidae), Rana japonica Boulenger, 1879 (Anura: Ranidae), and Rhacophorus schlegelii Günther, 1858 (Anura: Rhacophoridae). We found predation by the water striders affects the survival rate of frog eggs floating on the water surface. We suggest that this hunting event would occur in water bodies in which water striders and frogs coexist, especially the region where their phenology overlaps.     

Landscape size affects the relative importance of habitat amount,habitat fragmentation,and matrix quality on forest birds

It is important to understand the relative effects of landscape habitat loss, habitat fragmentation, and matrix quality on biodiversity, so that potential management options can be appropriately ranked. However, their effects and relative importance may change with the size of the landscape considered because the multiple (and potentially conflicting) ecological processes that are influenced by landscape structure occur at different spatial scales (e.g. dispersal, predation, foraging). We estimated the relative effects of habitat loss, habitat fragmentation, and matrix quality (measured as the amount of forest, the proportion of forest area contained in large core forests, and the density of roads respectively) on fragmentation‐sensitive forest birds in southern Ontario, Canada using a range of landscape sizes (0.8–310 km²). We used three complementary statistical approaches to estimate relative effects of these correlated landscape factors – 1) multiple regression, 2) information theoretic (AIC) estimates of the most parsimonious model, and 3) multi‐model inference to average effects across all supported models. We controlled for spatial autocorrelation, local habitat, roadside sampling bias, time of day, season, habitat heterogeneity, and the interaction between the effects of habitat amount and fragmentation. We found that relative effects of habitat amount and fragmentation were scale dependent; habitat amount had a consistently positive effect that was consistent over more than two orders of magnitude in landscape area (~1–300 km²). In contrast, the effects of habitat fragmentation depended on the size of the landscape considered. Indeed, for veery Catharus fuscescens, habitat fragmentation had positive effects at one scale and negative effects at another. The effects of matrix quality were generally weak and changed little with scale. For the number of fragmentation sensitive species and the presence of veery, habitat amount was most important in large landscapes and habitat fragmentation in small landscapes but for the presence of ovenbird Seiurus aurocapilla, habitat amount was most important at all scales.     

黄河下游农业景观中景观结构和生境特征对林表生蜘蛛多样性的影响

以捕食者来进行"自上而下"的生物防治是有效而经济的。蜘蛛作为农业景观中重要的捕食者,在不同的尺度上研究景观和环境要素对其多样性的影响是十分必要的。目前,有关黄河下游农业景观研究中,关于蜘蛛多样性的研究报道较少。针对黄河下游农业景观中林地生境的蜘蛛多样性展开研究,于2014年4月和7月采用陷阱法调查林地生境中蜘蛛种群的分布及其多样性,分析了对蜘蛛多样性影响最强烈的环境因子,以及不同蜘蛛种群对草本植被盖度的不同选择。结果发现:研究区林地生境内蜘蛛的优势种群为星豹蛛(Pardosa astrigena)、单带希托蛛(Hitobia unifascigera)、类水狼蛛(Pirata piratoides)和陕西近狂蛛(Drassyllus shaanxiensis)。不同尺度上的景观要素和环境要素(解释变量)对蜘蛛多样性的影响存在差异,且在不同的季节均为100 m尺度上的解释变量对蜘蛛多样性的影响最大。在100 m尺度上,不同的解释变量对蜘蛛多样性的影响也不同,春季林地中的植被盖度对其影响最大,路距和林地面积也有较为明显的影响,夏季林地中的植被高度和植被盖度对其影响最大,其余解释变量的影响则极小。不同的蜘蛛种群对草本植被盖度大小的偏好不同,多数蜘蛛偏好高的植被盖度,如星豹蛛和白纹舞蛛(Alopecosa albostriata)等,也有部分蜘蛛种群偏好中、低植被盖度,如赫氏花蟹蛛(Xysticus hedini Schenkel)、白斑猎蛛(Evarcha albaria)和皮雄红螯蛛(Araneae)。研究表明,黄河下游农业景观林地生境中,不同的景观要素和环境要素在不同尺度和不同季节上对蜘蛛多样性的影响具有显著的差异,草本植被对蜘蛛多样性的影响极为显著。因此在研究区内合理规划林地的建设,加强草本植被的保护,提高林地捕食者的数量,有助于生物防治工作的发展和生物多样性保护工作的进行。     

Positive interactions among plant species for pollinator service: assessing the ‘magnet species’ concept with invasive species

Plants with poorly attractive flowers or with little floral rewards may have inadequate pollinator service, which in turn reduces seed output. However, pollinator service of less attractive species could be enhanced when they are associated with species with highly attractive flowers (so called ‘magnet‐species’). Although several studies have reported the magnet species effect, few of them have evaluated whether this positive interaction result in an enhancement of the seed output for the beneficiary species. Here, we compared pollinator visitation rates and seed output of the invasive annual species Carduus pycnocephalus when grow associated with shrubs of the invasive Lupinus arboreus and when grow alone, and hypothesized that L. arboreus acts as a magnet species for C. pycnocephalus. Results showed that C. pycnocephalus individuals associated with L. arboreus had higher pollinator visitation rates and higher seed output than individuals growing alone. The higher visitation rates of C. pycnocephalus associated to L. arboreus were maintained after accounting for flower density, which consistently supports our hypothesis on the magnet species effect of L. arboreus. Given that both species are invasives, the facilitated pollination and reproduction of C. pycnocephalus by L. arboreus could promote its naturalization in the community, suggesting a synergistic invasional process contributing to an ‘invasional meltdown’. The magnet effect of Lupinus on Carduus found in this study seems to be one the first examples of indirect facilitative interactions via increased pollination among invasive species.     

Hierarchical analysis of Swainson’s Spurfowl Pternistis swainsonii habitat use on Highveld maize and livestock farms

This paper explains habitat use by Swainson’s Spurfowl Pternistis swainsonii on maize Zea mays and livestock farms on the Highveld south-east of Johannesburg, South Africa. The purpose is to describe habitat modification methods to manipulate the abundance of Swainson’s Spurfowl on Highveld farms where maize is produced. Field observations were conducted along a 100 km road transect during June 2014–May 2015. A hierarchical habitat analysis with three spatial levels was applied. The location of adult male Swainson’s Spurfowl was used as an indicator of habitat use. Females breed and rear broods in male territories. The micro (2.5-m-radius plot around the birds) and macro (>2.5-m-radius plot) habitats and landscape features were recorded for each sighting. Spurfowl moved within landscapes on a seasonal basis. A micro/macro combination linked with landscape features was a reliable indicator of spurfowl habitat preferences. Micro- and macro-habitats within landscapes can potentially be modified at a single spatial level, or a combination of levels, to manipulate spurfowl abundance on Highveld farms with maize production and livestock.     

Limited influence of local and landscape factors on finescale gene flow in two pond‐breeding amphibians

Dispersal and gene flow within animal populations are influenced by the composition and configuration of the landscape. In this study, we evaluated hypotheses about the impact of natural and anthropogenic factors on genetic differentiation in two amphibian species, the spotted salamander (Ambystoma maculatum) and the wood frog (Lithobates sylvaticus) in a commercial forest in central Maine. We conducted this analysis at two scales: a local level, focused on factors measured at each breeding pond, and a landscape level, focused on factors measured between ponds. We investigated the effects of a number of environmental factors in six categories including Productivity, Physical, Land Composition, Land Configuration, Isolation and Location. Embryos were sampled from 56 spotted salamander breeding ponds and 39 wood frog breeding ponds. We used a hierarchical Bayesian approach in the program GESTE at each breeding pond and a random forest algorithm in conjunction with a network analysis between the ponds. We found overall high genetic connectivity across distances up to 17 km for both species and a limited effect of natural and anthropogenic factors on gene flow. We found the null models best explained patterns of genetic differentiation at a local level and found several factors at the landscape level that weakly influenced gene flow. This research indicates multiscale investigations that incorporate local and landscape factors are valuable for understanding patterns of gene flow. Our findings suggest that dispersal rates in this system are high enough to minimize genetic structuring and that current forestry practices do not significantly impede dispersal.     

Re-examination of the phylogeny of Rhacophoridae (Anura) based on mitochondrial and nuclear DNA

The phylogenetic relationships among rhacophorid frogs are under dispute. We use partial sequences of three mitochondrial (12S rRNA, 16S rRNA, and cytochrome b) and three nuclear protein-coding (Rag-1, rhodopsin exon 1, and tyrosinase exon 1) genes from 57 ingroup taxa and eight outgroup taxa to propose a hypothesis for phylogenetic relationships within Rhacophoridae. Our results support recognition of the genus Feihyla, and Chiromantis is the sister taxon to the clade formed by Feihyla, Polypedates and Rhacophorus. We place Aquixalus odontotarsus within Kurixalus, and the remaining species of Aquixalus and Philautus jinxiuensis into the genus Gracixalus. We give Philautus (Kirtixalus) the rank of genus and place Philautus menglaensis within it. The division of species groups among Chinese Rhacophorus needs revision, and a cryptic species is revealed within Rhacophorus nigropunctatus. Rhacophorus pingbianensis is considered a synonym of Rhacophorus omeimontis. The validity of Rhacophorus hui is confirmed by present molecular evidence.     

Use of Fruiting Trees by Birds in Continuous Forest and Riparian Forest Remnants in Los Tuxtlas,Veracruz, Mexico1

The composition of plant species in fragmented landscapes may be influenced by the pattern of visitation by birds to fruiting trees and by the movement of seeds among and within fragments. We compared bird visitation patterns to two tree species (Dendropanax arboreus, Araliaceae; Bursera simaruba, Burseraceae) in continuous forest and remnants of riparian vegetation in a region dominated by pasture in Los Tuxtlas, Veracruz, Mexico. We quantified frequency of visitation, fruit consumption, consistency of visitation (percentage of total tree observation periods during which a given bird species was recorded), and species composition of birds at individuals of both tree species in continuous forest and riparian remnants. Bird visitation rate, species richness, and fruit consumption rates were similar within both tree species in the two habitats. Species assemblages at D. arboreus were different between continuous forest and remnants. Species assemblages at B. simaruba did not differ by habitat. Our results demonstrate that habitat disturbance may influence avian visitation patterns, which may in turn affect subsequent recruitment patterns in some tree species. Our results, however, were not consistent between the tree species, suggesting that it is difficult to generalize concerning the effects of forest disturbance on avian species assemblages in fruiting trees.     

Effects of advance and retreat of agricultural landscapes on Rana japonica and R. ornativentris

Paddy fields are essential habitats for frogs. We evaluated the impacts of both farmland consolidation including agricultural road improvement and farmland abandonment on the two Rana species using a model incorporating spatial autocorrelation. A sampling unit consists of several paddy fields that share a ditch and are isolated from other blocks by roads or other land covers. We surveyed 619 blocks in an area of about 1000 km² from the plain to the mountains of Toyota City in central Japan. Among them, 124 blocks included at least a flooded paddy field where frogs could lay eggs. R. ornativentris and R. japonica bred in 50 and 25 blocks, respectively. We constructed models to explain the presence/absence of two species by GLM (non-spatial model) and hierarchical Bayesian model with INLA (spatial model) that includes spatial autocorrelation as a random effect. Explanatory variables of the local scale were the altitude, location of the paddy field (yatsuda (valley bottom paddy fields) or non-yatsuda), farmland consolidated or not consolidated, and under cultivation or abandoned. Those of the landscape scale were areas of forest and paddy fields, and road density in 14 circles with different radius from 50 to 2000 m. Both species’ distribution had significant spatial autocorrelation. The spatial model had a higher discriminative ability than the non-spatial model. Farmland consolidation and the forest area in the 400 m radius had a positive effect on R. ornativentris. Altitude and road density in the 50 m radius had negative effects, cultivation had a positive effect, and farmland consolidation and yatsuda had no or negative effects on R. japonica. R. ornativentris was threatened by farmland abandonment, but the urbanization and/or farmland consolidation threatened R. japonica.

     

Interspecific variation in the emetic response of anurans

1. The emetic response of seven species (four genera) of frogs to apomorphine hydrochloride, copper sulfate, antimonyl potassium tartrate and mechanical stimulation at the esophageal orifice was surveyed. Xenopus laevis and Rhacophorus schlegelii were more sensitive to systemically administered apomorphine than were the other species tested.2. The sensitivity of Rana rugosa to apomorphine varied with the season.3. All of the species showed vigorous vomiting behavior after the oral administration of either copper sulfate or antimonyl potassium tartrate.4. Mechanical stimulation also induced vomiting in all species. Although the species differed in sensitivity to the different emetic stimulants, the adaptive significance of this interspecific variation is not known.5. From the stand point of the mechanics for ejecting gastric contents, there is little difference between frogs and mammals.6. Frogs, particularly Xenopus laevis, may be a useful non-mammalian model for studying emesis.     

Fourteenth research symposium University of Durham 1974

Abstract

Background: Few studies analysing lichen diversity have simultaneously considered interactions among drivers that operate at different spatial and temporal scales.

Aims: The aims of this study were to evaluate the relative importance of host tree, and local, landscape and historical factors in explaining lichen diversity in managed temperate forests, and to test the potential interactions among factors acting at different spatial scales.

Methods: Thirty-five stands were selected in the ?rség region of western Hungary. Linear models and multi-model inference within an information-theory framework were used to evaluate the role of different variables on lichen species richness.

Results: Drivers at multiple spatial scales contributed to shaping lichen species richness both at the tree and plot levels. Tree-level species richness was related to both tree- and plot-level factors. With increasing relative diffuse light lichen species richness increased; this effect was stronger on the higher than on the lower part of the trunks. At the plot scale, species richness was affected by local drivers. Landscape and historical factors had no, or only a marginal, effect.

Conclusions: Lichen conservation in temperate managed forests could be improved if the complex interactions among host tree quality and availability, micro-climatic conditions, and management were taken into consideration.     

基于高通量测序的象山港海域黑鲷(Acanthopagrus schlegelii)食性分析

选取象山港黑鲷个体为研究对象,以18S rDNA为靶标,利用Illumina Miseq高通量测序方法研究黑鲷饵料生物组成特征,分析不同龄组黑鲷的食性异同。通过序列比对,共在黑鲷胃含物中鉴定出41个属中的62种饵料生物,分属9个门,其中节肢动物门（Arthropoda）、绿藻门（Chlorophyta）和软体动物门（Mollusca）是黑鲷饵料生物的优势组成门类。从饵料生物相对丰度和出现频率上分析,石莼（Ulva lactuca）、熊本牡蛎（Crassostrea sikamea）、胸刺水蚤（Centropages hamatus）、日本蟳（Charybdis japonica）、毛蚶（Scapharca subcrenata）和褐菖鲉（Sebastiscus marmoratus）是黑鲷的优势饵料物种,所占饵料生物总相对丰度的比重达60.90%。相似性分析检验（ANOSIM）结果显示：1至4龄黑鲷个体的饵料生物组成不存在显著性差异。与传统食性分析方法相比,高通量测序法在黑鲷饵料生物检测灵敏性上显现了较为明显的优势,保障黑鲷等重要物种的种群稳定对于该海域具有重要的生态和经济意义。     

Habitat assessment for a rare, arboreal forest mammal, the tree hyrax Dendrohyrax arboreus

Recent findings have suggested that there has been a change in the structural nature of forests in the Eastern Cape, South Africa, which explains decreases in forest fauna. One of these (rare) forest species is the tree hyrax Dendrohyrax arboreus, a nocturnal, arboreal folivore, which makes use of cavity‐bearing trees as dens. However, a conflict exists between the use of forest resources and in protecting habitats for the tree hyrax. In order to design appropriate management strategies, conservation authorities and forest managers require information regarding the specific habitat requirements of fauna in their forest, particularly those that are already threatened by resource use. The aims of this study were thus: (i) to characterise the den trees of D. arboreus, (ii) to determine whether D. arboreus selects for certain den tree characteristics (i.e. relative to the abundance of that characteristic); and (iii) to develop a habitat assessment model for D. arboreus. The tree hydrax was found to select for den trees with particular characteristics: seven tree species were selected as den trees, which were usually the tallest trees in the canopy (4–8 m). Den trees were usually only partly decayed, with multiple cavity entrances and trunk angles of between 45° and 68°. Cavity entrance and orientation did not appear to play a role in den tree selection by D. arboreus. A function which discriminated between den trees and non‐den trees was calculated, and can be used to determine the suitability of a tree as a den for a tree hyrax (and thus to prevent it from being removed during commercial logging operations), or to assess the suitability of an area for habitation by tree hyraxes. This model can therefore help to alleviate the conflict between forest conservation managers and resource users in the Eastern Cape.