Cyanobacterial dominance in lakes

Cyanobacterial dominance in lakes has received much attention in the past because of frequent bloom formation in lakes of higher trophic levels. In this paper, underlying mechanisms of cyanobacterial dominance are analyzed and discussed using both original and literature data from various shallow mixed and deep stratifying lakes from temperate and (sub)tropical regions. Examples include all four ecotypes of cyanobacteria sensu Mur et al. (1993), because their behavior in the water column is entirely different. Colony forming species (Microcystis) are exemplified from the large shallow Tai Hu, China. Data from a shallow urban lake, Alte Donau in Austria are used to characterize well mixed species (Cylindrospermopsis), while stratifying species (Planktothrix) are analyzed from the deep alpine lake Mondsee. Nitrogen fixing species (Aphanizomenon) are typified from a shallow river-run lake in Germany. Factors causing the dominance of one or the other group are often difficult to reveal because several interacting factors are usually involved which are not necessarily the same in different environments. Strategies for restoration, therefore, depend on both the cyanobacterial species involved and the specific causing situation. Some uncertainty about the success of correctives, however, will remain due to the stochastic nature of the events and pathways leading to cyanobacterial blooms. Truly integrated research programs are required to generate predictive models capable of quantifying key variables at appropriate spatial and temporal scales.     

Tree dominance and diversity in Minas Gerais,Brazil

Quantifying diversity is an old challenge for ecologists and is also a social demand given the increasing threats to natural areas. We sought to work on these issues by using data from 158 vegetation remnants (over 350,000 trees) in southeastern Brazil (Minas Gerais State—MG, nearly 600,000 km²). Specifically, we sought to answer the following questions. (1) How many trees and tree species currently exist in MG vegetation remnants? (2) How much of such biodiversity is present in each vegetation domain (Atlantic Forest, Cerrado and Caatinga) and vegetation type (Seasonally Dry tropical forest “semideciduous”, Seasonally Dry tropical forest “deciduous”, Rain Forest, Swamp, Cerrado and Cerradão) in MG? (3) How much has been lost in regards to tree amount and tree species? We built a 0.1-degree cell grid to estimate the number of trees via spatial regression and used Fisher’s alpha and Fisher’s log series to provide estimates on how many tree species there are and were in MG. We found the number of trees in Minas Gerais to be approximately 24.5 × 10⁹, and the number of tree species to be between 3592 and 3743. The most abundant species distribution among the vegetation domains and vegetation types followed inversely the environmental heterogeneity of the classes. Consequently, the most abundant species in MG belonged to the Cerrado domain, where there was less environmental heterogeneity. The numbers of trees and tree species lost were estimated at 68.54 and 4.03–8.42% of the original values, respectively. We discuss that due to the consequences of human impacts that go back in the region for over a thousand years, other processes not considered in this study, such as habitat degradation by isolation, alterations of food webs, unsustainable use, and climate change, might have caused local extinctions and potentially increased the number of species lost. We believe our results may guide conservation initiatives by providing a base for future environmental laws, parks planning, and the development of more appropriate vegetation management techniques in MG. In addition, our results may inspire future quantitative ecological studies in the tropics.     

Allogrooming in cattle: Relationships between social preferences,feeding displacements and social dominance

The aim of this study was to describe the allogrooming behaviour of group-housed lactating cows (Bos taurus) as it relates to social dominance, friendship, parity and level of feeding competition. We measured the socio-negative (displacements at the feeder and in the lying stalls) and socio-positive interactions (allogrooming and preferential spatial associations) in six groups of eight dairy cows. This experimental model has been shown to be useful in investigating the effects of high social pressure in groups of cattle. The level of social competition was manipulated by halving the access to the feeder. Allogrooming was observed mostly at the feeder after fresh feed delivery and during the night between 12 and 2 a.m. Dominance rank had no effect on the expression of allogrooming. When competition between animals increased, allogrooming declined, especially in low-ranking, primiparous animals. In addition to its role in coat hygiene and potential role in reducing tension between animals competing for feed, we conclude that allogrooming may be a behaviour reflecting friendship in cows, because it is correlated to preferential associations between partners at the feeder. We suggest that primiparous cows are more susceptible to suffer from a lack of hygiene or socio-positive relationships when submitted to high competitive pressure, especially when they are mixed with more experienced animals that could have better coping strategies in a high competition situation.     

Cyanobacterial two-component proteins: structure, diversity, distribution, and evolution.

A survey of the already characterized and potential two-component protein sequences that exist in the nine complete and seven partially annotated cyanobacterial genome sequences available (as of May 2005) showed that the cyanobacteria possess a much larger repertoire of such proteins than most other bacteria. By analysis of the domain structure of the 1,171 potential histidine kinases, response regulators, and hybrid kinases, many various arrangements of about thirty different modules could be distinguished. The number of two-component proteins is related in part to genome size but also to the variety of physiological properties and ecophysiologies of the different strains. Groups of orthologues were defined, only a few of which have representatives with known physiological functions. Based on comparisons with the proposed phylogenetic relationships between the strains, the orthology groups show that (i) a few genes, some of them clustered on the genome, have been conserved by all species, suggesting their very ancient origin and an essential role for the corresponding proteins, and (ii) duplications, fusions, gene losses, insertions, and deletions, as well as domain shuffling, occurred during evolution, leading to the extant repertoire. These mechanisms are put in perspective with the different genetic properties that cyanobacteria have to achieve genome plasticity. This review is designed to serve as a basis for orienting further research aimed at defining the most ancient regulatory mechanisms and understanding how evolution worked to select and keep the most appropriate systems for cyanobacteria to develop in the quite different environments that they have successfully colonized.     

Host preferences of the phlebotomine sandfly Lutzomyia longipalpis in Amazonian Brazil

Experiments were undertaken to determine the relative attractiveness of humans, dogs and chickens to Lutzomyia longipalpis, the principal vector of Leishmania chagasi causing American visceral leishmaniasis. Field experiments in two villages on Marajó Island, Pará State, Brazil, showed that one boy attracted significantly more flies than one dog or chicken, and slightly fewer flies than a group of six chickens. Experiments with laboratory-bred female flies showed that a significantly greater number of flies engorged on a single human than on either a single dog or chicken, and man-biting catches demonstrated the willingness of flies to bite in the field. It appears that Lu.longipalpis has catholic feeding habits, the attractiveness of different hosts being largely a function of their relative sizes. These results are discussed with reference to the epidemiology of visceral leishmaniasis in Brazil.     

Food distribution,dominance, and aggressive behaviors in bonnet macaques

Resource availability or distribution may affect interindividual competition in species such as primates, which forage in social groups, and several field studies suggest that dominance status predicts access to restricted food sources. Increased competition due to restricted resources may result in the intensification of aggressive behaviors. The study reported here examines the impact of manipulation of the distribution of food resources in a laboratory-housed group of bonnet macaques to assess the impact of distribution on aggressive behaviors. Food was restricted to a space which allowed access to only one or two individuals at a time or was dispersed throughout the living enclosure to allow universal access in alternating periods. During periods of clumped distribution, the monkeys obtained access to the food in order of their dominance status in the group. In addition, overall levels of aggressive behaviors increased, submissive behavior increased, and play decreased during periods of clumped distribution of food. These results confirm the findings from field studies indicating increases in agonism with restriction of food resources. These findings also have implications for primate colony management, in terms of developing strategies for minimizing intragroup aggression in captive groups.     

Geographic distribution of HBsAg subtypes in Brazil

HBsAg positive serum samples (896) from five brazilian regions were analysed for HBsAg subtypes. The presence of five different subtypes (ayw2, ayw3, ayw4, adw2 and adw4) was detected. In Northern region subtypes adw4 (41.2%) and adw2 (37.2%) were predominant. In the North East only subtype adw2 was encountered. In Central West, South-East and South, subtypes ayw2, ayw3, adw2 and adw4 were present, with predominance of adw2 in Central West and South East (84.3% and 69.4% respectively) whereas in the South the predominant subtype was ayw3 (41.9%) followed by ayw2 (36.4%). Subtypes ayw1, ayr and adr were not found among the samples studied. These results show the difference in the incidence of HBsAg subtypes in the different regions of Brazil and their significance in relation to the colonization and migrations in this country.     

Visualising the environmental preferences of Pinus tecunumanii populations

A network of 92 pedigreed ex situ conservation plantings of Pinus tecunumanii, established as replicated progeny within provenance trials, is used to present a principal components-based analysis that illustrates the climatic preferences of 23 populations from the species’ native range. This meta-analysis quantifies changes in the relative productivity, assessed as individual-tree volume, of populations across climatic gradients and associates the preference of a population with increased volume production along the climatic gradient. Clustering and ordination on the matrix containing estimates of change in productivity for each population summarise differentials in productivity associated with climatic gradients. The preference of populations along principal components therefore reflects the adaptive profiles of populations, which may be used with breeding-value estimates from routine genetic evaluations to assist with the development of deployment populations targeting different environments. As well, the approach may be used to test whether the preference of a population, estimated as population loadings for growth differentials, is affected by the climate in the native range of the population. This relationship may be interpreted as an estimate of how much local climate shapes the adaptive profiles of populations. The amount and seasonality of precipitation most clearly differentiate the adaptive profiles of populations, with less variation in the population responses explained by temperature differentiation. As expected from type-B correlation estimates, most populations exhibited small changes in relative productivity across climatic gradients. However, patterns of similarities in adaptive profiles among populations were evident using spatial orientation to display population responses to the climatic variables experienced in the provenance trials. Clustering and ordination of population responses derived from empirical data served to identify populations that responded positively or negatively to climatic variables; this information may help guide conservation genetics efforts, direct the deployment of germplasm, or identify seed sources that are sensitive to changes in climatic variables. Linking response patterns to the climatic data from the native range of each population indicated little effect of local climate shaping adaptive profiles.     

Cyclospora cayetanensis: biology, environmental distribution and transfer

Cyclospora cayetanensis is an apicomplexan protozoan that has emerged as an important pathogen causing endemic or epidemic diarrheal disease worldwide. In industrialized countries, the parasite has been recognized as the causative agent of several outbreaks of diarrheal illness mostly associated with produce imported from endemic areas. In developing countries, human cyclosporosis is widely distributed. Infection rates from 0% to 41.6% have been described in the general population. However, the epidemiology, biology, and ecology of C. cayetanensis are not fully understood. The life cycle is not completely characterized, although it appears to require a single human host to be accomplished. The role of animals as natural reservoirs of the parasite remains to be determined. Little information is available concerning the environmental distribution and vehicles of transmission of C. cayetanensis. Contaminated water, foods or soil can be vehicles of spread of the parasite. The significant uncertainties that remain in the knowledge of C. cayetanensis highlight the need for continuing research in several areas, including its basic biology and environmental distribution.     

Cyanobacterial metallothioneins: Biochemistry and molecular genetics

Summary Metallothioneins have been extensively studied in many different eukaryotes where they sequester, and hence detoxify, excess amounts of certain metal ions. However, the precise functions of many of these molecules are not fully understood. This article reviews literature concerning their namesakes in prokaryotes.Abbreviations MT metallothionein - MRE metal regulatory element     

Apical dominance and the effect of gravity on nutrient distribution

Summary The effect of orientation with resepct to gravity on the accumulation of phosphorus-32 into lateral and leader apices has been investigated in seedling trees of Betula pubescens. In upright, well-branched seedlings, showing only weak apical dominance, basally injected ³²P is distributed more or less equally among the lateral and leader apices. Re-orientation treatments which result in the assumption of strong dominance by a lateral apex also result in a marked accumulation of ³²P into that apex. This effect of orientation on nutrient transport is manifested within two to four days after application of the gravimorphic treatments.The results are discussed in the light of modern concepts of hormone-directed nutrient transport and a working hypothesis for the role of gravity in apical dominance of woody plants is suggested.     

Pecking preferences and pre-dispositions in domestic chicks: implications for the development of environmental enrichment devices

Environmental enrichment is thought likely to benefit chickens and farmers in many ways; these include reduced fearfulness and feather pecking and improved productivity. Enrichment devices would intuitively be more effective if they reliably attracted and sustained appreciable interest but many fail to do so. This may reflect the fact that the choice of stimuli often reflects availability and human preconceptions rather than a critical consideration of the birds' preferences and pre-dispositions. We had previously identified string as a particularly attractive pecking stimulus for chicks and adult hens (Gallus gallus domesticus) of a laying strain (ISA Brown). In the present study we found that chicks of another laying strain (Lohmann Brown) also pecked sooner and more at a bunch of string than at chains or beads (Experiment 1). White or yellow strings were preferred to red, green or blue ones (Experiment 2) and white string elicited more pecking than did combinations of white and yellow or of all five colours (Experiment 3). Varying the length and width of the bunches of string exerted no detectable effects on pecking (Experiment 4) whereas incorporating small, shiny beads in the white string devices actually reduced pecking (Experiment 5). Virtually all the devices elicited progressively more interest with repeated presentation; this trend was particularly marked for white string. Collectively, the present findings demonstrate that young domestic chicks have clear and specific pecking preferences. Although the magnitude of response varied across experiments, white string consistently elicited the most interest. Our two main conclusions are: (i) white or yellow strings were particularly attractive stimuli that drew increasing interest, at least in the short term, and (ii) simple devices were preferred to more complex ones, or at least to those used here.     

Assessing the environmental profile of orange production in Brazil

Background, aim, and scope

Brazil is the world’s largest orange producing country, with a total planted area of more than 820,000 hectares. The bulk of the oranges produced in Brazil (70%) is processed into frozen concentrated orange juice (FCOJ) by large processing companies. Exports represent around 97% of the total FCOJ produced, making Brazil the largest world producer and exporter of FCOJ. The Brazilian citrus sector accounts for half of the world’s supply of orange juice and for 80% of the juice traded on the international market. The goal of this study is to characterize the Brazilian orange producers in terms of farm size, cultivated varieties, watering system and tillage practices. In addition, the study presents some aspects of the LCI of oranges grown specifically for the production of FCOJ in the two major orange-growing areas in Brazil (the Northern and Southern regions of the State of São Paulo) during reference crop year 2002/03 in order to generate detailed production inventory data and identify the potential environmental impacts of tillage, both of which are key to enable the formulation of sustainability parameters for the production of FCOJ in Brazil.

Methods

This study was performed in compliance with the guidelines and requirements of the ISO 14040 standard series. All information and data considered and evaluated in this study (the use of water, energy, fertilizers, pesticides and soil correctors) were gathered through in-depth questionnaires either filled in directly by the farm manager or completed by the farm manager and sent in by mail. The data cover a total of 367,200 metric tons of oranges produced by 4 million plants in commercial production from a total evaluated area that accounts for 19.5% of the overall production of oranges in the State of São Paulo. The two major orange-producing areas in Brazil located respectively in the Northern and Southern regions of the State of São Paulo were evaluated. Only the inputs and outputs associated with tillage practices and technology were considered in this paper. The environmental aspects of the production of fertilizers and pesticides were not included within the boundaries. The functional unit selected for this study was 1,000 kg of oranges for FCOJ. Farm-specific data have been combined with agricultural production data to construct an orange cultivation model.

Results

The orange varieties for the production of FCOJ evaluated in this study were Pêra, Valência and Natal. The farms investigated had a cultivated area varying from 22 to 7,000 ha, with a plant density ranging from 170 to 500 plants/ha and an average yield of 30,500 kg/ha for mature trees. Depending on the region, the production of 1,000 kg of oranges requires approx. 120 to 4,400 MJ of energy; 0.3 to 36 kg of diesel; 1,100 to 54,500 kg of water for irrigation; 0.3 to 65 kg of fertilizers (NPK); 0.1 to 13.5 kg of pesticides; 8 to 650 kg of soil correctors. The distribution of some inputs across the farms located in the two main Brazilian orange-producing regions is presented, in addition to the total weighted average.

Discussion

In addition to the variations among the regions evaluated, it was generally observed that there were very considerable differences in order of magnitude between the data collected from farms located in the same region. Although the inputs are directly related to the specific characteristics of each farm and the climatic and topographic conditions of its location, this study has identified some farms that are in a good position to reduce the amounts of some inputs and enhance their environmental and economical performance.

Conclusions

Taking into account the aspects evaluated in this study, only 21% of the orange growers showed good performance, i.e., consumption of pesticides, fertilizers and soil correction compounds equal to or lower than the weighted averages, except for “land use”, which was above the average for the majority of these farms. This study provided important results that allow for a better understanding of the agricultural practices involved and the potential environmental impacts of this product.

Recommendation and perspective

The authors would like to suggest that the five best-performing farms average values be set as the maximum allowable level and point of departure for the discussion on the good environmental performance of Brazilian FCOJ. Besides the total inputs, the role of good agricultural practices to achieve good yields and, at the same time, improve the sustainability of orange growing should also be taken into consideration. Future updates of this study will show the evolution of natural resource management as a result of improved land use, new agricultural practices, reduced use of fertilizers and agrochemicals.     

Fish distribution and ontogenetic habitat preferences in non-estuarine lagoons and adjacent reefs

We surveyed fish distribution in three lagoons and adjacent forereefs in the British Virgin Islands recording about 28,000 fish from 40 families and 118 species. Canonical correspondence indicated that rock, sand, fleshy algae, gorgonians, mangroves and live hard coral were the most important habitat types influencing fish assemblage composition. About 47% of fishes occurring at more than 10 stations displayed evidence of ontogenetic partitioning between reefs and lagoons but post-settlement ontogenetic life history strategies were quite varied depending on the species. For example Chaetodon striatus juveniles occurred exclusively in lagoons and all sexually mature adults were found on reefs. Some differences were less pronounced as seen in Halichoeres bivittatus where individuals of all sizes occurred on reefs and lagoons, but when analysed it was found that reefs had larger individuals than lagoons. Some species, such as Acanthurus bahianus, were primarily reef species whose juveniles also used lagoon habitats while others, such as Gerres cinereus, were generally lagoon species whose adults occasionally moved onto reefs. Even with all this variation in life-history strategies, all the species that exhibited bay-reef partitioning used the lagoons as juveniles then moved onto reefs as adults and not vice versa, supporting the hypothesis that bays are important nursery areas for reef-dwelling fishes. These results show that a detailed review of the natural life-history strategies and habitat requirements are required before making further generalisations about the role of near-shore habitat types as nurseries for reef fishes. This is especially important given the rapid changes in tropical near-shore habitats around the world.     

Fecal cortisol levels in free-ranging female chacma baboons: relationship to dominance, reproductive state and environmental factors

Savannah baboons are one of the few mammalian species that do not exhibit seasonal reproduction patterns and are therefore ideally suited to study the effect of female reproductive states (cycling, pregnant, lactating) on cortisol levels independent of seasonal factors. Fecal samples from 10 free-ranging female chacma baboons (Papio hamadryas ursinus), collected during a period of 17 months, were analyzed using a steroid-extraction method. Reproductive state had a significant effect on fecal cortisol, with lowest levels found in estrous females. Fertility was not related to fecal cortisol levels; we found no significant differences between samples collected on conceptive and nonconceptive cycles. Environmental factors explained most of the variance of fecal cortisol levels. Cortisol measures were strongly correlated with seasonal differences such as daylight duration, temperature and the amount of time that baboons spent resting. We measured higher cortisol levels during winter months and suggest that this could be related to shorter resting periods and to the cold minimum ambient temperatures at this study site. Finally, we found no relationship between social rank nor the rate of agonistic interactions with basal fecal cortisol levels.     

The Anopheles dirus complex: spatial distribution and environmental drivers

Background

The Anopheles dirus complex includes efficient malaria vectors of the Asian forested zone. Studies suggest ecological and biological differences between the species of the complex but variations within species suggest possible environmental influences. Behavioural variation might determine vector capacity and adaptation to changing environment. It is thus necessary to clarify the species distributions and the influences of environment on behavioural heterogeneity.

Methods

A literature review highlights variation between species, influences of environmental drivers, and consequences on vector status and control. The localisation of collection sites from the literature and from a recent project (MALVECASIA) produces detailed species distributions maps. These facilitate species identification and analysis of environmental influences.

Results

The maps give a good overview of species distributions. If species status partly explains behavioural heterogeneity, occurrence and vectorial status, some environmental drivers have at least the same importance. Those include rainfall, temperature, humidity, shade, soil type, water chemistry and moon phase. Most factors are probably constantly favourable in forest. Biological specificities, behaviour and high human-vector contact in the forest can explain the association of this complex with high malaria prevalence, multi-drug resistant Plasmodium falciparum and partial control failure of forest malaria in Southeast Asia.

Conclusion

Environmental and human factors seem better than species specificities at explaining behavioural heterogeneity. Although forest seems essential for mosquito survival, adaptations to orchards and wells have been recorded. Understanding the relationship between landscape components and mosquito population is a priority in foreseeing the influence of land-cover changes on malaria occurrence and in shaping control strategies for the future.     

Diversity and distribution of Collembola (Arthropoda: Hexapoda) of Brazil

Objectives of this study are to summarize the current state of knowledge of the diversity and distribution of Collembola in Brazil; to identify areas of most importance, interest, and need of additional research; and to enable development of experimental hypotheses for future research on Collembola in this region. The total number of collembolan species currently known from Brazil is 199, distributed among 19 families and 80 genera. The greatest numbers of species have been recorded from the states of Rio de Janeiro and Amazonas (with 69 and 56 species, respectively). Few or no species are known from most Brazilian states. Most of the species for which specific Brazilian environmental habitat information is available (93, 66%) are known only from forest environments. Most of the species (127, 64%) are known only from Brazil (most likely being endemic); 33 species (17%) are known only from Brazil and other neotropical areas; and 39 species (20%) have a distribution beyond the neotropical region. Results of this study indicate that much remains to be learned about the Brazilian collembolan fauna. This is especially true for areas of the northeastern, central-western, and southern regions. Studies to determine the species composition of collembolan communities in specific environments in Brazil are needed. The great diversity of Collembola species in Brazil is largely unknown and there are many opportunities for additional research on these environmentally important organisms in this area. Such additional research on the Collembola in Brazil is also essential for a better understanding of the neotropical (and world) collembolan fauna.     

Measuring preferences on environmental damages in LCIA. Part 2: choice and allocation questions in panel methods

Background, aim, and scope  Within life cycle impact assessment (LCIA), ‘panel methods’ has become a common term to denominate methods that elicit and measure stakeholders’ stated preferences on environmental impact categories. Such panel procedures use different question formats to elicit information on weighting across impact categories from the stakeholders. The two most frequently used question formats are score allocation and choice between alternatives. The differences between these two question formats were analyzed in order to give advice on how to frame future panel procedures. Materials and methods  A choice-based weighting procedure (choice experiment) for the three damage categories of human health, ecosystems quality, and resources was developed and executed. A logistic regression model was applied in order to estimate the weighting factors for the polled sample. Results from this choice-based procedure were compared to the results from an allocation-based procedure described in part 1 of this paper. Results  When weighting factors are elicited by score allocation questions, panelists tend to distribute the scores more equally. A factor of 1.5 between the least and the most weighted damage category was found. Weighting factors from a choice experiment were more spread, i.e., the most important category was weighted considerably higher, whereas the other two categories were weighted less. Thus, for the choice experiment, the range between the most and the least weighted categories was considerably bigger—by about a factor of 4. Discussion  A comparison of the two procedures revealed that the weighting of environmental damage categories is considerably influenced by the question of format. The reason for these variations may be different cognitive routines that are applied. In addition, several advantages and shortcomings of choice experiments are discussed. Conclusions  The developed, choice-based procedure provided meaningful results. Thus, choice experiments, often used for the monetary valuation of environmental goods, can also be applied in LCIA to elicit nonmonetary weighting factors. Recommendations and perspectives  Choice experiments form a new interesting approach for weighting procedures in the future as they have some advantages over the often used score allocation methods. They are simple and more realistic than other procedures, as panelists have practiced in choice tasks from everyday life. We, therefore, recommend such choice-based procedures for future panel studies.