Genetic diversity, population structure, effective population size and demographic history of the Finnish wolf population

The Finnish wolf population (Canis lupus) was sampled during three different periods (1996-1998, 1999-2001 and 2002-2004), and 118 individuals were genotyped with 10 microsatellite markers. Large genetic variation was found in the population despite a recent demographic bottleneck. No spatial population subdivision was found even though a significant negative relationship between genetic relatedness and geographic distance suggested isolation by distance. Very few individuals did not belong to the local wolf population as determined by assignment analyses, suggesting a low level of immigration in the population. We used the temporal approach and several statistical methods to estimate the variance effective size of the population. All methods gave similar estimates of effective population size, approximately 40 wolves. These estimates were slightly larger than the estimated census size of breeding individuals. A Bayesian model based on Markov chain Monte Carlo simulations indicated strong evidence for a long-term population decline. These results suggest that the contemporary wolf population size is roughly 8% of its historical size, and that the population decline dates back to late 19th century or early 20th century. Despite an increase of over 50% in the census size of the population during the whole study period, there was only weak evidence that the effective population size during the last period was higher than during the first. This may be caused by increased inbreeding, diminished dispersal within the population, and decreased immigration to the population during the last study period.     

Home range, activity and movements of a wolf pack in central Italy

Home range, habitat use, activity and movement patterns were studied in a pack of wolves in a mountainous region of Abruzzo, central Italy from June 1986 to March 1987. The home range, estimated by the minimum convex polygon from 421 radio locations, measured 197 km² and comprised several infrastructures and areas of human presence, including four garbage dumps and two offal sites. Core areas, calculated by the harmonic mean method, were located toward the centre of the home range where human disturbance and road density were lowest but forest cover was highest. During the time-span of the study, home-range use and movement patterns suggested a marked centrality in spatial behaviour and traditionality in retreat areas year-round, both during pup-rearing season and the following months. In addition, by being essentially nocturnal, resident wolves appeared to adopt tactics of temporal segregation from people to exploit food resources safely in the proximity of human settlements. Overall activity correlated with distance travelled (r = 0.90, P << 0.001), and corresponded to cyclic nocturnal movements from retreat to feeding areas. Wolf movement rate between 20:00 and 04:00 h averaged 2.5 km/h but varied up to about 8 km/h, and daily distance travelled (= 27 km/night; range 17–38 km/night) mostly depended on the location of traditional feeding sites. Home-range configuration, habitat use, activity and movements all appeared highly integrated so as to represent the most functional compromise between avoidance of human inteference and exploitation of the available food resources.     

Density dependence in a recovering osprey population: demographic and behavioural processes

1. Understanding how density-dependent and independent processes influence demographic parameters, and hence regulate population size, is fundamental within population ecology. We investigated density dependence in growth rate and fecundity in a recovering population of a semicolonial raptor, the osprey Pandion haliaetus [Linnaeus, 1758], using 31 years of count and demographic data in Corsica. 2. The study population increased from three pairs in 1974 to an average of 22 pairs in the late 1990s, with two distinct phases during the recovery (increase followed by stability) and contrasted trends in breeding parameters in each phase. 3. We show density dependence in population growth rate in the second phase, indicating that the stabilized population was regulated. We also show density dependence in productivity (fledging success between years and hatching success within years). 4. Using long-term data on behavioural interactions at nest sites, and on diet and fish provisioning rate, we evaluated two possible mechanisms of density dependence in productivity, food depletion and behavioural interference. 5. As density increased, both provisioning rate and the size of prey increased, contrary to predictions of a food-depletion mechanism. In the time series, a reduction in fledging success coincided with an increase in the number of non-breeders. Hatching success decreased with increasing local density and frequency of interactions with conspecifics, suggesting that behavioural interference was influencing hatching success. 6. Our study shows that, taking into account the role of non-breeders, in particular in species or populations where there are many floaters and where competition for nest sites is intense, can improve our understanding of density-dependent processes and help conservation actions.     

Home range size estimates of red deer in Germany: environmental,individual and methodological correlates

Home range size (HRS) is the fundamental measure of space use by animals. Despite the importance of the home range concept, there is no consensus on how to estimate the HRS of animals. Assessments of the performance of commonly applied HRS estimators have largely been based on simulated data or on location data of few sample individuals occupying one study area. To empirically evaluate the impact of supplementary feeding, habitat composition, red deer sex, and estimation method (minimum convex polygon (MCP), kernel density estimator (KDE) and α-local convex hull (α-LoCoH)) on HRS, we analysed the data of 183 annual red deer home ranges using a mixed modelling approach. Red deer HRSs were smallest in areas with substantial supplementary feeding, intermediate in areas with closed forest cover but no supplementary feeding, and largest in fragmented landscapes where supplementary feeding rarely occurs. Consistently, male HRSs were larger than female HRSs. While MCP- and KDE-HRS estimates were roughly similar, estimates from the α-LoCoH method were substantially smaller than those of MCP and KDE. Analyses of 342 seasonal HRS largely reflected patterns of annual HRS. However, seasonal HRS differed between seasons and red deer sex. In areas with no or little feeding, red deer adjusted HRS seasonally, whereas red deer supplied with supplementary food during winter did not alter their HRS seasonally. Our study suggests that supplementary feeding and habitat configuration strongly affect the spatial ecology of red deer; this might have considerable sanitary and ecological implications. We suggest that sex differences in annual space use extent are proportional along a resource gradient but are mediated by seasons. Finally, method-related variation in space use studies of animals needs to be considered more cautiously.     

Recruitment to a seabird population depends on environmental factors and on population size

1. A novel capture-mark-recapture (CMR) method was used to build a multistate model of recruitment by young birds to a breeding population of common guillemots Uria aalge on the Isle of May, Scotland. Recruitment of a total of 2757 individually marked guillemots over 17 years was modelled as a process where individuals had to move from an unobservable state at sea, through a nonbreeding state present in the colony, to the breeding state. The probabilities of individuals returning to the colony in a given year, at age 2 and 3-4 years, were positively correlated with an environmental covariate, the winter North Atlantic Oscillation index (WNAO) in the previous years. 2. For 2 year olds, there was a negative relationship with breeding population size, suggesting that density dependence operated in this colony through limitation of food or some other resource. 3. Survival over the first 2 years of life varied with cohort, but was unrelated to the WNAO. Mean survival over this 2-year period was high at 0.576 (95% CI: 0.444; 0.708). 4. This high survival, combined with a low 'local' survival after age 5 years of 0.695 (0-654; 0.733) and observations of Isle of May chicks at other colonies, suggests that most surviving chicks return to the natal colony before deciding whether to recruit there or move elsewhere.     

Life history variation in Arabidopsis lyrata across its range: effects of climate,population size and herbivory

For plants with wide distributional areas, covering a wide range of ecologically distinct habitats, evolutionary divergence can lead to substantial phenotypic variation across a species’ range. These intraspecific trait differences can be very informative about the nature of the selective environment as they potentially reflect different environmental selection pressures while controlling for other species characteristics. In this study, multiple regression and structural equation models were used to examine the relative importance of environmental, ecological, population size and population density effects for variation in growth, reproduction and leaf morphology among 36 populations of the perennial plant Arabidopsis lyrata ssp. petraea across its northwest European range. Substantial variation in temperature, soil nutrient levels and herbivory was observed across the species’ range. In addition, large differences in flowering percentage and individual seed production were found. Leaf morphology varied considerably, with a substantial amount of variation in specific leaf area and trichome density among populations. Structural equation modeling suggested that this species is sensitive to small population sizes, eutrophication and herbivory. Reproductive output was negatively related to herbivory. In addition population size was negatively associated with soil nutrient concentrations. Leaf morphology was shown to be mainly associated with temperature and herbivory. Lower specific leaf areas and lower trichome densities were related to colder areas and high trichomes densities were related to high levels of herbivory. These model results are consistent with the interpretation that, in addition to changing environmental effects across its range, ecological effects such as herbivory contribute to the large variation in life history and morphology of this species. The results reveal a strong negative effect of herbivory on the reproductive output of this species, not only via direct effects of herbivory on flowers and seeds, but also indirectly via a shift in life history strategy.     

Home range size and distribution in a wild population of Cape pangolins, Manis temminckii, in north‐west Zimbabwe

The aim of this study was to estimate the size of the home range used by individual Cape pangolins ( Manis temminckii ). The study was conducted in 1991–95 at Sengwa Wildlife Research Institute, Gokwe, Zimbabwe. Radio‐telemetry was used to repeatedly locate study pangolins. Home range area was estimated from the location of the burrows used by each pangolin. It was established that pangolins must be tracked for 85+ days to generate a reliable estimate of home range. The size of home ranges, determined from 1141 tracking days of data for 10 pangolins (3·0–15·8 kg body mass) that were each tracked for at least 85 days, was from 0·17 to 11·07 km². Larger (older) pangolins used more burrows and had larger home ranges than smaller (younger) pangolins. The data indicate that large adult males had larger home ranges than large adult females. Within each sex, the home ranges were adjacent to each other with only slight overlap at the boundaries. There was clear overlap of home ranges between males and females.     

Field studies on a social lizard: Home range and social organization in an Australian skink,Egernia major

Abstract Although most reptiles have polygynous mating systems without long‐term pair bonds, one lineage of large scincid lizards in Australia is exceptional in this respect. Reports of complex sociality in the genus Egernia led us to conduct the first radiotelemetric field study of a species within this group. Land mullets (Egernia major) are large (60 cm total length), viviparous lizards from rainforest habitats in south‐eastern Australia. To document the spatial ecology and social organization of this species, we captured 12 adult lizards in the Barrington Tops area of eastern New South Wales and implanted them with miniature radiotransmitters. The lizards were released at their sites of capture and located daily for the next 6 weeks. All of the radiotracked lizards had discrete home ranges of approximately 10 000 m², based around well‐defined core areas (approximately 2000–3000 m²). Females tended to move further, and to range over wider areas, than did males. All of the radiotracked lizards lived in social groups consisting of one or more adult males and females plus juveniles of all age classes. Subgroups were apparent within one group of five radio‐tagged lizards: individual animals consistently shared their shelter sites and home ranges with one or more specific individuals. Male/female pairings were more frequent than expected under the null hypothesis of random association among individuals. The data in the present study support anecdotal reports of pair bonds in E. major and support suggestions that the social systems of species in this genus are more complex than those of previously studied reptiles.     

Home range size and activity of the wood lemming, Myopus schisticolor

We present the results from a radiotelemetric study on space use and activity in a natural population of the wood lemming Myopus schisticolor. Male home ranges were larger than females, and the ratio female home range to male home range was smaller than expected compared to other small rodents. Males moved distances 4-12 times longer than females. We argue that this difference in mobility gives a higher probability of capturing males than females in snap trap studies. If there is a sex biased trappability, this might explain the increasing female biased sex ratio during the snow free season (1:1 in spring, 3:1 [female:male| in autumn), as a higher mortality of males during the reproductive season.     

Inter‐population variation in demographic parameters: a neglected subject?

Demographic parameters and population growth rates vary among populations of the same species. Such variation can be extensive, as shown by a comparison of nine published studies of black-legged kittiwakes Rissa tridactyla . We argue that rather than being a nuisance, inter-population variation can improve our understanding of population dynamics. Analysis of data from several geographically dispersed studies can aid detection of causal relationships between demographic parameters and environmental factors and thus improve our understanding of impacts of e.g. climate change, and help elucidate mechanisms of population regulation. Extensive inter-population variation also adds another perspective to studies of life history evolution and should be taken into account in across-species comparisons.     

The effect of social learning in a small population facing environmental change: an agent-based simulation

Learning is defined as behavioral modification due to experience, social or asocial. Social learning might be less costly than asocial learning and allow the rapid accumulation of learned traits across generations. However, the benefits of social learning in a small population of individuals relying on local interactions and experiencing environmental change are not well understood yet. In this study, we used agent-based simulations to address this issue by comparing the performance of social learning to asocial learning and innate behavior, in both a static and a changing environment. Learning was modeled using neural networks, and innate behavior was modeled using genetically coded behaviors. The performance of 10 mobile simulated agents was measured under three environmental scenarios: static, abrupt change and gradual change. We found that social learning allows for a better performance (in terms of survival) than asocial learning in static and abrupt-change scenarios. In contrast, when changes are gradual, social learning delays achieving the correct alternative, while asocial learning facilitates innovation; interestingly, a mixed population (social and asocial learners) performs the best.     

Home range size of willow tits: a response to winter habitat loss

We examined the behavioral response to habitat loss and fragmentation of willow tits (Parus montanus) in winter in a mosaic forest landscape in northern Finland. We studied habitat preference, flock size and home range size of 16 flocks, half of which had their territories in forests fragmented by forestry and half in continuous forest. We predicted that birds would respond to habitat loss by enlarging their home range and/or diminishing group size. In addition, to compensate for fragmentation effects, willow tits might be expected to include more optimal habitat into their territories. Flocks included on average 3.9 birds and occupied territories of 12.6 ha. Willow tits avoided open areas (clear cuts and young sapling stands) and preferred mature forests and older sapling stands or pine bogs equally. Birds responded to habitat loss by enlarging their home ranges but not by reducing the group size. Large territories included a smaller proportion of mature forests, but the proportion of sapling and pine bog habitat did not change. Birds on territories that included a large proportion of open habitat localized their activity on several distinct habitat patches that were distributed over a wide area. We conclude that willow tits adjust territory use to compensate for the inclusion of unsuitable habitat within home ranges, and older sapling areas and pine bogs serve as surrogates for mature forests. However, birds did not enlarge the proportion of forest habitat in their territories with increasing habitat loss. Thus, our data do not suggest a strong effect of fragmentation, but imply that forestry practices reduce suitable wintering habitat and carrying capacity in the area. Thus winter habitat loss may explain the observed population decline of willow tits in Finland during recent decades.     

Ecological and environmental factors related to variation in egg size of New World flycatchers

Geographical variation in egg size is well documented for several taxa, but remains insufficiently described for birds in spite of a well‐known latitudinal gradient in clutch size. Several hypotheses have been proposed to explain avian egg size variation; however, they were not tested on a continental scale. Egg size is a key component of reproductive investment that influences offspring fitness. It is thought to vary geographically as one of a set of correlated life‐history traits that are under selection from varying ecological conditions. We completed a comprehensive literature review and calculated egg sizes for the most widespread clade within tyrant flycatchers, describing for the first time the geographical variation in egg size on a continental scale. We examined the relative support for ecological and environmental variables in explaining egg size variation using multi‐model inference and linear mixed models controlled for phylogenetic autocorrelation among species. We tested five hypotheses and found that: larger eggs occur in colder sites, which is consistent with the embryonic temperature hypothesis; medium/long‐distance migrants had smaller eggs than resident species while short‐distance migrants had the largest eggs; neither species clutch size, nor species nest type, nor evapotranspiration seasonality influenced egg size. Avian egg size is larger in Austral and Neotropical America (ANA), where species are resident or short‐distance migrants, and smaller across the medium/long‐distance migrants of the Nearctic region. In addition, while clutch size increases towards higher northern latitudes and is almost invariable across ANA species, egg sizes vary largely across ANA sites, increasing with southern latitudes and higher elevations and being influenced by summer temperature. While the embryonic temperature hypothesis has been usually linked to parental nest attentiveness, we highlight that environmental temperatures also have strong effects in shaping investment in egg size.     

Clutch size variation and morphology in a cyclomorphic Bosmina population

Clutch size, cyclomorphosis and allometric growth were analysedin a population of the humpbacked Bosmina (E.) coregoni gibbera.This species shows cyclomorphosis in antennule length and bodyheight, traits that may reduce predation risk from Leptodorakindtii. Individuals with long antennule and extreme body heightmay pay a cost in terms of decreased reproductive capacity.On the other hand, increasing the body height may be a way toincrease the brood chamber volume during periods of good foodconditions. We tested these hypotheses by comparing the seasonalvariation in clutch size with the seasonal variation in morphology.Antennule length and body height increased from mid-May to Augustand showed usually positive allometry at times with high populationdensities of the predatory cladoceran Leptodora kindtii. Clutchsize decreased from spring to late summer contrary to the hypothesisthat cyclomorphosis in height is caused by a seasonal variationin reproductive demand. However, within-dates antennule lengthwas negatively related and body height was positively relatedto clutch size. We conclude that the long antennule may imposea cost that reduces the reproductive capacity. The hypothesisthat carapace cyclomorphosis is driven by seasonally varyingclutch sizes was rejected.     

Quantifying the variation in the effective population size within a genome

The effective population size (N(e)) is one of the most fundamental parameters in population genetics. It is thought to vary across the genome as a consequence of differences in the rate of recombination and the density of selected sites due to the processes of genetic hitchhiking and background selection. Although it is known that there is intragenomic variation in the effective population size in some species, it is not known whether this is widespread or how much variation in the effective population size there is. Here, we test whether the effective population size varies across the genome, between protein-coding genes, in 10 eukaryotic species by considering whether there is significant variation in neutral diversity, taking into account differences in the mutation rate between loci by using the divergence between species. In most species we find significant evidence of variation. We investigate whether the variation in N(e) is correlated to recombination rate and the density of selected sites in four species, for which these data are available. We find that N(e) is positively correlated to recombination rate in one species, Drosophila melanogaster, and negatively correlated to a measure of the density of selected sites in two others, humans and Arabidopsis thaliana. However, much of the variation remains unexplained. We use a hierarchical Bayesian analysis to quantify the amount of variation in the effective population size and show that it is quite modest in all species-most genes have an N(e) that is within a few fold of all other genes. Nonetheless we show that this modest variation in N(e) is sufficient to cause significant differences in the efficiency of natural selection across the genome, by demonstrating that the ratio of the number of nonsynonymous to synonymous polymorphisms is significantly correlated to synonymous diversity and estimates of N(e), even taking into account the obvious nonindependence between these measures.