Role of legumes in providing N for sustainable tropical pasture systems

Forage legumes have long been lauded for their ability to fix atmospheric nitrogen and contribute to the sustainability of agricultural production systems. However despite the benefits they bring in terms of increased herbage and animal production they are not widely used in temperate or tropical regions. In this review the amounts of biological nitrogen fixation (BNF) needed to sustain the soil-plant-animal system are discussed and related to the amounts fixed in tropical pastures. The data suggest that tropical forage legumes have the capacity to meet the requirements to balance the N cycle of grazed pastures. The actual amounts required will depend on the rate of pasture utilization and the efficiency of recycling via litter, excreta and internal remobilization. The efficiency of nitrogen fixation (% of legume N derived from fixation) is usually high in tropical pastures (>80%) and is unlikely to be affected by inorganic soil N in the absence of N fertilizer. Thus an estimate of the amoutns of N fixed could be obtained from simple estimates of legume biomass provided tissue levels of other nutrients such as phosphorus and potassium are adequate. Key factors for the achievement of sustainable grass/legume pastures include the selection of appropriate germplasm adapted to the particular environment and the judicious use of fertilizers such as phosphorus, potassium, calcium, magnesium and sulphur on acid infertile soils typical of the sub-humid and humid tropics. The main constraints to the widespread adoption of forage legumes include a lack of legume persistence, the presence of anti-quality factors such as tannins, variable Bradyrhizobium requirements and lack of acceptability by farmers. Strategies for the alleviation of these constrainst are discussed. Forage legumes can be used to recuperate degraded soils via their ability to improve the physical, chemical and biological properties of soils and these benefits could be of particular use for small-scale resource-poor farmers. The incorporation of forage legumes into agropastoral systems is discussed as an environmentally and economically attractive means to encourage the widespread adoption of legumes in the humid tropics.     

Metabolomic identification of molecular changes associated with stress resilience in the chronic mild stress rat model of depression

Chronic stressful events are key risk factors for major depressive disorder (MDD), yet some individuals exposed to stressful events do not develop MDD. This disparity suggests the significance of resilience to deleterious stress effects. However, the underlying molecular mechanisms of stress resilience are poorly understood. In the present study, the chronic mild stress (CMS) rat model of depression was used to reveal the individual differences in stress response. Employing a gas chromatography/mass spectrometry metabolomic approach, the molecular changes associated with stress resilience in rat cerebellum were characterized by comparing anhedonic, CMS resilient and control groups. The results showed that four cerebellar metabolites—proline, lysine, glutamine, and dihydroxyacetone phosphate—were identified as the key differential metabolites associated with stress resilience. These metabolites may play a potential role in rendering individuals less vulnerable to CMS exposure. These findings provide insight into the molecular mechanisms underlying stress resilience and shed light on novel therapeutic opportunities to augment stress resiliency.     

Root growth in seedlings of annual pasture species

Summary The mean rate at which roots of 12 annual pasture species penetrated a yellow sand to a depth of 80 to 90 cm varied from 0.8 to 3.2 cm per day.Penetration rate was closely correlated with seed weight until roots reached a depth of about 20 cm. Thereafter rates became progressively less dependent on seed size.Penetration rate varied with time. In six species a minimum rate was reached at a depth of 18 to 24 cm. In two species rhythmic fluctuations in root penetration rate appeared to be associated with the development of new leaves on the shoot.Shading the shoots substantially reduced root penetration rate but the rhythmic fluctuations persisted. These observations are consistent with the hypothesis that the rate of root penetration is determined by the supply of metabolites to the root system.     

Criteria and methods for comparing the effectiveness of Rhizobium strains for pasture legumes under field conditions

Plant and Soil - Five Rhizobium strains were tested in the field with six Trifolium hosts. In order to examine criteria of evaluation of effectiveness under a range of sowing methods, all inoculant...     

Occurrence,identification and transmission of the phytoplasma associated with tomato big bud disease and identification of its vector and weed host in Pakistan

Abstract

Tomato (Solanum lycopersicum L.) plants showing stunting, big bud, leaves yellowing or reddening and witches’-broom symptoms were observed since 2009 in Pakistan. A weed Parthenium hysterophorus grown in and around tomato fields also exhibited witches’-broom like symptoms. Fluorescence light microscopy of hand-cut stem stalk sections treated with Dienes’ stain showed blue areas in the phloem region of both tomato and P. hysterophorus symptomatic plants that indicated the association of phytoplasma with the complex. Amplification of 1.2?kb 16S rDNA fragment in nested PCR confirmed that the symptomatic tomato and P. hysterophorus plants are infected by a phytoplasma. Partial sequencing of 16S rRNA (GenBank accession: LT671581 and LT671583) and virtual restriction fragment length polymorphism confirmed that the phytoplasma associated with both plant species had the greatest homology to 16SrII-D subgroup. Disease was successfully transmitted by grafting and leafhopper Orosius albicinctus in tomato plants. This is the first report of natural occurrence of 16SrII-D phytoplasma in tomatoes and a weed P. hysterophorus in Pakistan.     

Metabolomic identification of diagnostic serum-based biomarkers for advanced stage melanoma

Introduction

Melanoma is a highly aggressive malignancy and is currently one of the fastest growing cancers worldwide. While early stage (I and II) disease is highly curable with excellent prognosis, mortality rates rise dramatically after distant spread. We sought to identify differences in the metabolome of melanoma patients to further elucidate the pathophysiology of melanoma and identify potential biomarkers to aid in earlier detection of recurrence.

Methods

Using ¹H NMR and DI–LC–MS/MS, we profiled serum samples from 26 patients with stage III (nodal metastasis) or stage IV (distant metastasis) melanoma and compared their biochemical profiles with 46 age- and gender-matched controls.

Results

We accurately quantified 181 metabolites in serum using a combination of ¹H NMR and DI–LC–MS/MS. We observed significant separation between cases and controls in the PLS-DA scores plot (permutation test p-value?=?0.002). Using the concentrations of PC-aa-C40:3, dl-carnitine, octanoyl-l-carnitine, ethanol, and methylmalonyl-l-carnitine we developed a diagnostic algorithm with an AUC (95% CI)?=?0.822 (0.665–0.979) with sensitivity and specificity of 100 and 56%, respectively. Furthermore, we identified arginine, proline, tryptophan, glutamine, glutamate, glutathione and ornithine metabolism to be significantly perturbed due to disease (p?<?0.05).

Conclusion

Targeted metabolomic analysis demonstrated significant differences in metabolic profiles of advanced stage (III and IV) melanoma patients as compared to controls. These differences may represent a potential avenue for the development of multi-marker serum-based assays for earlier detection of recurrences, allow for newer, more effective targeted therapy when tumor burden is less, and further elucidate the pathophysiologic changes that occur in melanoma.

     

Predation of annual grass weed seeds in arable field margins

Seeds of three species of annual grass weeds (Alopecurus myosuroides, Avena fatua and Bromus sterilis) were placed in field margins around arable fields in a randomised block split-plot design experiment. The field margin vegetation was either sown or naturally regenerated and either cut or uncut. The seeds were either placed in cages designed to exclude small mammals and birds or were uncaged. The proportion of seeds removed was monitored on 10 occasions and mean seed loss was analysed. In general, a greater proportion of weed seeds was removed from uncaged trays in uncut swards, suggesting predation by small mammals, which inhabit tall grass. This effect was mainly due to removal of seeds of the two large-seeded species (A. fatua and B. sterilis), with A. fatua being especially favoured. It is therefore likely that small mammals play a role in the population dynamics of major crop weeds by feeding on their seeds in field margins, especially when these are dense and uncut.     

Factors affecting the establishment and growth of annual legumes in semi-arid mediterranean grasslands

Legumes are an important component of mediterranean grasslands with a significant ecological and economic role. The aim of this study was to investigate the factors that affect their establishment and growth and how they survive in a highly variable and unpredictable environment. The research was carried out in a grassland characterised by a semi-arid mediterranean climate and located on a calcareous substrate at about 150 m a.s.l., in Macedonia, northern Greece. It was dominated by annual legumes such as Hippocrepis multisiliquosa, Medicago disciformis, Medicago minima, Onobrychis aequindentata, Trifolium angustifolium, Trifolium campestre and Trifolium scabrum. It was subjected to the following treatments for four consecutive years: prescribed burning, irrigation, digging, cutting, P fertilization and control. Total legume density was measured in late autumn and in the following spring each year, while total legume biomass was measured only in spring. Dominant legume species densities and biomasses were measured only in spring in the last 3 years. Also, monthly precipitation and air temperature were recorded in a nearby weather station. A great reduction of both legume density and biomass occurred at the third growing season due to adverse weather conditions. Among treatments, P fertilization affected the positively annual legume density and biomass. The other treatments such as burning, irrigation, digging and cutting influenced positively or negatively annual legume density and biomass depending on the climatic characteristics of the particular growing season involved. It is concluded that in semi-arid mediterranean grasslands with cold winters, weather conditions strongly interact with human disturbances in affecting establishment and growth of annual legumes.     

Effects of plant diversity on invasion of weed species in experimental pasture communities

Studies have shown that weed invasion into grasslands may be suppressed if the resident plant community is sufficiently diverse. The objective of this study was to determine whether increased forage plant diversity in grazed pasture communities might be associated with reduced weed abundance both in the aboveground vegetation and soil seed bank. Data were collected from a pasture experiment established in 1994 in Missouri, USA. The experiment consisted of 15 m×15 m plots sown with Festuca arundinacea Schreb. or Bromus inermis Leysser as a base species in mixtures of 1, 2, 3, 6, or 8 forage species. The plots were grazed by cattle during each growing season from 1998 to 2002. Aboveground plant species composition in each plot was measured using a point step method. Soil cores were collected in 1999 and 2002, and the species composition of germinable weed seeds in plots were evaluated by identifying seedlings as they germinated over an 8-week period. Species diversity was measured using several indices: species richness (S), Shannon–Wiener diversity index (H^′), and forage species evenness (J). Aboveground weed abundance in plots was unrelated to forage species richness (S), but weed abundance declined as the evenness (J) of resident forage species increased in mixtures. The species composition of mixtures may have affected weed abundance. Weeds both in the soil seed bank and aboveground vegetation were less abundant in mixtures that contained F. arundinacea compared with mixtures that contained B. inermis. Although variables like forage plant productivity may also suppress weed abundance in pastures, our results suggest that maintaining an evenly distributed mixture of forage species may help suppress weeds as well.

Zusammenfassung

Untersuchungen haben gezeigt, dass die Unkrautinvasion in Grünländer unterdrückt sein kann, wenn die ansässige Pflanzengemeinschaft ausreichend divers ist. Die Zielsetzung dieser Untersuchung war es zu bestimmen, ob eine erhöhte Futterpflanzendiversität in beweideten Grünlandgemeinschaften mit einer verringerten Unkrautabundanz sowohl bei der oberirdischen Vegetation als auch in der Bodensamenbank verbunden sein kann. Die Daten wurden in einem Weidelandexperiment gesammelt, das 1994 in Missouri, USA, etabliert wurde. Das Experiment bestand aus 15 m×15 m Probeflächen, die mit Festuca arundinacea Schreb. oder Bromus inermis Leysser als Basisarten in Mischungen von 1, 2, 3, 6 oder 8 Futterarten eingesät waren. Die Probeflächen wurden während jeder Wachstumssaison von 1998 bis 2002 stark mit Vieh beweidet. Die oberirdische Pflanzenartenzusammensetzung wurde in jeder Fläche mit einer Punktstopmethode gemessen. Bodenproben wurden 1999 und 2002 gesammelt und die Artenzusammensetzung der keimfähigen Unkrautsamen wurde in den Probeflächen bewertet, indem die Keimlinge identifiziert wurden, die in einer 8-wöchigen Periode keimten. Die Artendiversität wurde unter Verwendung verschiedener Indizes gemessen: Artenreichtum (S), Shannon–Wiener-Diversitätsindex (H^′) und Futterarten-Äquitabilität (J). Die oberirdische Unkrautartenabundanz in den Probeflächen stand in keiner Beziehung zum Futterartenreichtum (S), aber die Unkrautabundanz nahm ab, wenn die Äquitabilität (J) der ansässigen Futterarten in den Mischungen zunahm. Die Artenzusammensetzung der Mischungen könnte die Unkrautabundanz beeinflusst haben. Sowohl die Unkräuter in der Bodensamenbank, als auch in der oberirdischen Vegetation waren weniger abundant in Mischungen, die F. arundinacea enthielten, im Vergleich zu denen, die B. inermis enthielten. Obgleich Variablen wie die Futterpflanzenproduktivität möglicherweise ebenfalls die Unkrautabundanz im Weideland unterdrücken, lassen unsere Ergebnisse vermuten, dass die Aufrechterhaltung einer gleichmäßigen Mischung von Futterarten ebenfalls helfen kann, die Unkräuter zu unterdrücken.     

American origin of Cupriavidus bacteria associated with invasive Mimosa legumes in the Philippines

To identify the origins of Cupriavidus nodule symbionts associated with two invasive Mimosa species in the Philippines, 22 isolates were sequenced for portions of three chromosomal genes and two symbiotic plasmid loci. Eleven isolates were identical at all gene loci (2713?bp) to a lineage found in Central America. Four other Philippine isolates were identical to a second Cupriavidus lineage distributed both in Central America and in the Caribbean. None of the remaining Philippine strains had more than 0.6% sequence divergence from American Cupriavidus lineages. These results imply that the Philippine population was founded by multiple introductions from the native range of their Mimosa hosts.     

Metabolomic fingerprinting of bull spermatozoa for identification of fertility signature metabolites

The objective of the study was to identify the fertility‐associated metabolites in bovine spermatozoa using liquid chromatography‐mass spectrometry (LC‐MS). Six Holstein Friesian crossbred bulls (three high‐fertile and three low‐fertile bulls) were the experimental animals. Sperm proteins were isolated and protein‐normalized samples were processed for metabolite extraction and subjected to LC‐MS/MS analysis. Mass spectrometry data were processed using iMETQ software and metabolites were identified using Human Metabolome DataBase while, Metaboanalyst 4.0 tool was used for statistical and pathway analysis. A total of 3,704 metabolites belonging to various chemical classes were identified in bull spermatozoa. After sorting out exogenous metabolites, 56 metabolites were observed common to both the groups while 44 and 35 metabolites were found unique to high‐ and low‐fertile spermatozoa, respectively. Among the common metabolites, concentrations of 19 metabolites were higher in high‐fertile compared to low‐fertile spermatozoa (fold change > 1.00). Spermatozoa metabolites with variable importance in projections score of more than 1.5 included hypotaurine, d ‐cysteine, selenocystine. In addition, metabolites such as spermine and l ‐cysteine were identified exclusively in high‐fertile spermatozoa. Collectively, the present study established the metabolic profile of bovine spermatozoa and identified the metabolomic differences between spermatozoa from high‐ and low‐fertile bulls. Among the sperm metabolites, hypotaurine, selenocysteine, l ‐malic acid, d ‐cysteine, and chondroitin 4‐sulfate hold the potential to be recognized as fertility‐associated metabolites.     

Seasonal variation in the nitrogenase activity of aPanicum maximum var.trichoglume pasture and identification of associated bacteria

Summary The influence of seasonal variation on nitrogenase (N₂-ase) activity of undisturbed soil-plant cores ofPanicum maximum var.trichoglume was measured using the C₂H₂ reduction assay. The largest N₂-ase activity in the field, 14.7 g N ha⁻¹ day⁻¹, occurred in spring when soil moisture was high, soil temperature was low and nitrogenous fertiliser influence was at a minimum. The potential N₂-ase activity of the cores, measured under controlled conditions, reached a maximum of 27.2 g N ha⁻¹ day⁻¹ and averaged 26.3 g N ha⁻¹ day⁻¹ over the 14 month sampling period. N₂-ase activity was positively correlated (P=0.05) with field soil moisture and negatively correlated with field soil temperature (r=0.59 and −0.78 respectively). Multiple regression showed that 69% of the variation of N₂-ase activity in the field was associated with the combined effects of soil moisture and soil temperature. Nitrogen fixing bacteria were isolated from the roots ofP. maximum and based upon morphology, biochemical tests and fluorescent antibody reaction, were found to be closely related toAzospirillum lipoferum.     

Diversity of nodule-endophytic agrobacteria-like strains associated with different grain legumes in Tunisia

This study represents the first report describing the genetic diversity of nodule-endophytic agrobacteria isolated from diverse legumes and their phylogenetic relationships with the valid species of agrobacteria, as well as the non-recognized genomospecies of the former Agrobacterium tumefaciens (Rhizobium radiobacter). The genetic diversity of a collection of 18 non-nodulating agrobacteria-like strains, previously isolated from root nodules of Vicia faba, Cicer arietinum and Phaseolus vulgaris from different geographical regions of Tunisia, was studied by REP-PCR and PCR-RFLP of the 16S-23S rDNA IGS, as well as by sequence analysis of the 16S rDNA and the housekeeping genes recA and atpD. The aim of the work was to study the genetic diversity of the different isolates and to check for any host-specificity. The results from the different techniques were congruent and suggested a specific interaction for P. vulgaris, whereas no specific endophytic interaction was observed for V. faba and C. arietinum. The phylogenetic analysis clearly indicated that some isolates were affiliated to R. radiobacter or to its non-recognized genomic species (genomovars G2, G4 and G9). However, the other isolates probably constitute new species within Rhizobium (Agrobacterium) and Shinella.     

Metabolomic biomarkers and novel dietary factors associated with gestational diabetes in China

Introduction

Gestational diabetes mellitus (GDM) is impaired glucose tolerance first recognised during pregnancy; its development is associated with many adverse outcomes. Mechanisms of GDM development are not fully elucidated and few studies have used Chinese participants.

Objectives

The aim of this study was to investigate the maternal metabolome associated with GDM in a Chinese population, and explore the relationship with maternal diet.

Methods

Ninety-three participants were recruited at 26–28 weeks’ gestation from Chongqing, China. Maternal urine, serum, and hair metabolomes were analysed using gas and liquid chromatography–mass spectrometry. Dietary intake was assessed using a 96-item food frequency questionnaire.

Results

Of the 1064 metabolites identified, 73 were significantly different between cases and controls (P?<?0.05), but only 2-aminobutyric acid had both a p- and q-value?<?0.05. A “snack-based-dietary-pattern” was associated with an increased likelihood of GDM (odds ratio 2·1; 95% confidence interval 1.1–3.9). The association remained significant after adjustment for calorie intake but not food volume.

Conclusion

This study provides a comprehensive characterization of the maternal metabolome. The snack-based dietary pattern associated with GDM suggests that timing and frequency of consumption are important factors in the relationship between maternal diet and GDM.

     

Foliar flavonoids of selected Vitis taxa in the Southeastern United States

A total of 19 compounds were isolated from the leaves of five North American members of the genus Vitis The flavonoid data indicate three distinct chemical groups: one producing flavonols, flavones and C-glycosylflavones (V. aestivalis and V. cinerea var. cinerea, one producing fiavonols and flavones (V. cinerea ver. floridana) and one producing only fiavonols ( V. vulpina and V. riparia). The fiavonoid complements of the taxa are extremely useful in taxon delimitation and in suggesting systematic relationships.