Natural sway frequencies and damping ratios of trees: influence of crown structure

Natural frequency and damping ratio were measured for nine plantation-grown Douglas-fir (Pseudotsuga menziesii Mirb. Franco) trees from the Oregon Coast Range under different levels of crown removal. Natural frequency of trees, in both their unpruned and completely de-branched states, was linearly related to the ratio of diameter at breast height to total tree height squared (i.e., DBH/H²), as expected from the theory governing the oscillation of a cantilever beam. Pruning resulted in an increase in natural frequency; however, at least 80% of the crown mass needed to be removed before this increase was noticeable. A single equation was developed that enabled the natural frequency of a tree of given size and pruning intensity to be predicted. Damping ratios of unpruned trees varied considerably from 8% to almost critical, while those for completely de-branched trees ranged from 1% to 8%. Two different trends in damping ratio were observed during pruning. Some trees exhibited an increase in damping ratio with initial crown removal, followed by a sharp decrease when the uppermost portion of the crown was removed. Others showed little or no change in damping ratio followed by a sharp reduction upon removal of the uppermost portion of the crown. Damping was mainly due to aerodynamic drag and preventing interference with neighbouring trees had little effect. Theoretical analysis using the finite element method indicated that changes in natural frequency as a result of pruning are not due to changes in damping ratio, but rather changes in mass distribution. This analysis also suggested that treating branches as lumped masses rather than individual cantilevers attached to the main stem may not be appropriate.     

Natural frequencies and damping ratios of Norway spruce (<Emphasis Type=Italic>Picea abies</Emphasis> (L.) Karst) growing on subalpine forested slopes

We investigated the natural frequencies and damping ratios of 24 Norway spruce trees (Picea abies (L.) Karst) growing on subalpine forested slopes using swaying experiments. Trees were winched to the release position using a manually operated cable winch. Before release, the stem base rotation was approximately 2 degrees. All trees were tested in both fall-line and cross-slope direction if possible to reveal the difference between the two perpendicular directions. A new method based upon the Hilbert transformation for evaluating the damping ratio for trees was used. It enabled us to investigate the damping ratio for all excited modes of vibration in the tree structure during the swaying experiments and to study if velocity proportional damping (viscous damping) is a reasonable assumption when predicting the tree response to different external actions using mechanical models. No difference in first natural frequency and damping ratio was found between the fall-line and cross-slope direction for all tested trees. The first natural frequencies correlated best with the diameter at breast height and squared total tree height DBH/H ². For the damping ratio, no significant correlation with different tree characteristics could be found. A non-velocity proportional damping ratio was observed for two trees. This indicates that using a viscous damping for all frequencies is an appropriate simplification when modelling the wind-tree interaction.     

Hydrogen and oxygen isotope ratios of tree-ring cellulose for riparian trees grown long-term under hydroponically controlled environments

Saplings of three riparian tree species (alder, birch and cottonwood) were grown for over 5 months in a hydroponics system that maintained the isotopic composition of source water in six treatments, ranging from –120 to +180‰δD and –15 to +10‰δ¹⁸O. The trees were grown in two greenhouses maintained at 25°C and at either 40 or 75% relative humidity, creating differences in transpiration rates and leaf water isotopic evaporative enrichment. The cellulose produced in the annual growth ring was linearly related to source water with differences in both slope and offset associated with greenhouse humidity. The slope of the isotopic composition of source water versus tree-ring cellulose was less than 1 for both δD and δ¹⁸O indicating incomplete isotopic exchange of carbohydrate substrate with xylem water during cellulose synthesis. Tests using the outer portion of the tree-ring and new roots were similar and showed that the tree-ring values were representative of the cellulose laid down under the imposed environmental conditions. The fraction of H and O in carbohydrate substrate that isotopically exchange with medium water was calculated to be 0.36 and 0.42 respectively, and biochemical mechanisms for these observed fractions are discussed. A mechanistic model of the biochemical fractionation events for both δD and δ¹⁸O leading to cellulose synthesis was robust over the wide range of cellulose stable isotope ratios. The experimental results indicate that both water source and humidity information are indeed recorded in tree-ring cellulose. These results help to resolve some of the disparate observations regarding the interpretation of stable isotope ratios in tree-rings found in the literature. Received: 4 January 1999 / Accepted: 12 August 1999     

Fragment size, pollination efficiency and reproductive success in natural populations of wind-pollinated Polylepis australis (Rosaceae) trees

It is well known that habitat fragmentation is likely to negatively affect the reproductive success of a species. Despite this fact, studies on the effects of fragmentation on reproductive success in combination with effects on natural pollination of wind-pollinated tree species are very rare. In this study, we analyzed the relationships between fragment size, components of pollination efficiency, reproductive success and progeny vigour of the highly fragmented populations of the wind-pollinated treeline species Polylepis australis (Rosaceae) in Argentina. We conducted our study in the high mountains of Córdoba, comparing pollination efficiency and reproduction between four fragment sizes. Most of our results indicate that P. australis is currently insensitive to fragmentation. However, our study revealed also a linear increase in leaf area and biomass of 40-day-old seedlings with increasing fragment size. Inbreeding problems through fragmentation as well as decreased habitat quality in small fragments are discussed as possible causes for the impaired progeny vigour.     

Natural regeneration of forest related to the spatial structure of trees: A study of two forest communities in Western Carpathians,southern Poland

The existence of a relationship between the spatial pattern of trees and the distribution of young individuals beneath the canopy has been tested in the beech (Fagus sylvatica) and spruce (Picea abies) — fir (Abies alba) forests in the mountainous region, using two different methods. The first method was the analysis of spatial pattern of individuals, the second one was based on calculating sums of influences of all trees occurring within analysed plot on a given point on the forest floor. Results of spatial pattern analyses were surprisingly consistent: almost all mature trees and seedlings didplayed a random pattern of spatial arrangement. However, there is a clear, although statistically insignificant tendency towards uniformity of spatial pattern with increasing sizes of analysed trees. Results of comparing sums of influences on regularly distributed points with sums of influences on seedlings or saplings revealed no tendency in forest regeneration to concentrate in places, where the sums were smaller than the average for a plot. This, coupled with the dominance of random spatial pattern of trees, suggests, that viewed on a small spatial scale, influence of competition among forest trees on their spatial arrangement is obscured by other factors, which are not closely related to the distribution of individuals.     

Quality assessment of urban trees: a comparative study of physiological characterisation,airborne imaging and on site fluorescence monitoring by the OJIP-test

The purpose of this paper is to demonstrate the complementary utility of chlorophyll fast fluorescence OJIP transient (from 50 microns to 1s) measurements in the aerial study of rows of trees. We identify limitations in photochemical events induced by urban injuries on Platanus acerfolia L. using the JIP-test procedure. The Performance Index (PIABS) showed the largest dynamic range to characterise the vitality of trees. Individual trees were graded into three quality groups based on the individual PIABS value compared to the overall average for trees in the alley. These groups are: high performers, with PIABS 50% higher than the alley average; normal trees, with a deviation from the alley average between -50% and %; and poor performers, whose deviation from the alley average was -50% or less. Trees also were grouped into five vitality categories on the basis of a stereoscopic and morphologic observation of the symmetry of tree crowns, percentage of defoliation and reflectance property in the visible and infra-red range. Here, we report a remarkable correlation between the airborne remote sensing data and the on-site fluorescence measurements.     

DFTMD studies of glucose and epimers: anomeric ratios, rotamer populations, and hydration energies

Results are presented from density functional molecular dynamics (DFTMD) simulations, based on constant energy dynamics, of glucose and its cyclic form of 6-carbon epimers. Both in vacuo and an implicit solvent method (COSMO) were examined, including simulations of low-energy conformations of each molecule. Analysis of the DFTMD results includes the following: energies averaged over the simulation time, calculated anomeric ratios, hydroxyl and hydroxymethyl rotamer populations, and hydration energies. Hydrogen-bonding networks persistence times were examined, and the effects of solvation on rotamer populations were described. Anomeric ratios calculated from energy optimization of an ensemble of low-energy conformers are compared to those obtained from ensemble averages from molecular dynamics, with dynamics simulations giving populations in best agreement with experimental anomeric ratios. Ensemble results in vacuo were not in agreement with experimental anomeric ratios or hydroxymethyl populations, producing in some cases reversal of the α:β ratios. The difficulty in obtaining correct α:β ratios increases with the number of axial groups; the mono-axial epimers being best represented, epimers with two axial groups being more difficult, and the epimers with three axial hydroxyl groups being most difficult to analyze, the result of a large number of very strong hydrogen-bonding networks that form the ensemble of low-energy conformations in the multi-axial structures.     

Additional studies of sheep haemopexin: genetic control,frequencies and postnatal development*

Summary. This study presents evidence that sheep haemopexin phenotypes are genetically controlled by three alleles, Hpx^A, Hpx^B1 and Hpx^B2, of a single autosomal locus. Frequencies of two alleles, Hpx^A and Hpx^B (Hpx^B encompasses two isoalleles, Hpx^B1 and Hpx^B2), were studied in eight sheep breeds in Czechoslovakia. The frequency of the HpxA allele was highest (ranging from 0.81 in Merino to 1.0 in East Friesian sheep). Qualitative and quantitative changes in haemopexin during postnatal development were studied by starch gel electrophoresis and rocket immunoelectrophoresis respectively. In electrophoresis, 1- or 2-day-old lambs had two very weak zones corresponding in mobility to two slower zones of adult animals. Later, the third more anodic zone appeared and gradually increased in intensity. In 1-month-old lambs the patterns were practically identical with those of adult animals. Using rocket immunoelectrophoresis, the level of haemopexin shortly after birth was practically zero. It rose sharply till the sixth day of life; then the level continued to rise slowly till about 1 month of age. The mean haemopexin level in adult sheep was 64.5 ± 18.26 (SD) mg/100ml serum, ranging from 30.5 to 116.5 mg/100ml.     

Screening concepts,characterization and structural analysis of microbial-derived bioactive lipopeptides: a review

Lipopeptide biosurfactants are surface active biomolecules that are produced by a variety of microorganisms. Microbial lipopeptides have gained the interest of microbiologists, chemists and biochemists for their high biodiversity as well as efficient action, low toxicity and good biodegradability in comparison to synthetic counterparts. In this report, we review methods for the production, isolation and screening, purification and structural characterization of microbial lipopeptides. Several techniques are currently available for each step, and we describe the most commonly utilized and recently developed techniques in this review. Investigations on lipopeptide biosurfactants in natural products require efficient isolation techniques for the characterization and evaluation of chemical and biological properties. A combination of chromatographic and spectroscopic techniques offer opportunities for a better characterization of lipopeptide structures, which in turn can lead to the application of lipopeptides in food, pharmaceutical, cosmetics, agricultural and bioremediation industries.     

Evaluation of the mobility and discrimination of Ca, Sr and Ba in forest ecosystems: consequence on the use of alkaline-earth element ratios as tracers of Ca

A comprehensive understanding of Ca cycling in an ecosystem is desirable because of the role of this element in tree mineral nutrition and its status as a major base cation on the soil exchange complex. The determination of the origin of Ca in forests is particularly indicated in regard of important changes linked to acid inputs and intensive logging. Natural strontium isotopes are increasingly used as tracers of Ca in forest ecosystems for qualitative and quantitative assessments. Nevertheless this method is limited to relatively simple systems with two sources of nutrients. Some recent studies coupled Sr/Ca or Sr/Ba ratios to Sr isotopic measurements in order to solve more complex systems. Such method has however associated with it some uncertainties: this approach assumed that Ca, Sr and Ba behave similarly throughout the ecosystem and does not take into account the Ca biopurification processes occurring in some tree’s organs which can alter element ratio. The present work focuses on two deciduous species covering large areas in Europe: European beech (Fagus sylvatica L.) and pedunculate oak (Quercus robur L.). In order to test the similarity of behaviour between Ca, Sr and Ba, their concentrations were measured extensively in the major compartments of two forest ecosystems. In parallel, the discrimination process inside tree organs was studied in 23 stands for beech and 10 stands for oak. We found that Sr and Ca behave similarly in all soil and tree compartments. By contrast, Ba and Ca appear to have contrasting behaviours, especially in streams, soil solution and soil exchange complex (no correlations between element concentrations). Sr/Ba and Ba/Ca ratios must therefore be used with care as tracer of Ca. The Ca biopurification is absent in roots and slight in bole wood but is large in bark, twigs and leaves. The discrimination factors (DF) between wood and leaves are characteristic of the two species studied and do not change significantly as a function of the soil Ca status (acidic or calcareous soils). Therefore, strontium–calcium DF can be used as a correction factor of the Sr/Ca ratio of leaves when this ratio is used in connection with Sr isotopic ratios. This correction allows to solve systems of tree nutrition with more than two sources of Ca.     

Immunoglobulin allotypes of Kenyan olive baboons: Troop frequencies,linkage disequilibria,and comparisons with other studies

Sera from a total of 564 olive baboons collected at six different localities in west central Kenya were examined for the presence of cross-reactive immunoglobulin allotypes with reagents used for human sera. Serum samples were tested for Km (1 and 3), Glm (1–3 and 17), andG3m (5, 6, 10, 11, 13–16, 21, 24, and 26). Polymorphism was found for Glm (1 and 17) and G3m (10, 13, and 15). These findings on antigen presence, absence, and polymorphism show broad similarities to, along with some differences from, previous studies of baboons. Our data support the view that there are variations in allotype frequencies between troops at single localities, as well as differences among geographically separated areas. Linkage disequilibria for Gm allotypes differ in strength and direction among the various local Kenya olive baboon populations.     

Patterns of increment width and strontium: calcium ratios in otoliths of juvenile rock blackfish, Girella elevata (M.)

Otoliths of juvenile Girella elevata (M.) were examined to obtain information about the environmental conditions experienced during early life. Patterns of increment deposition and elemental ratios in otoliths were compared in wild fish. A tetracycline experiment indicated that increments were deposited daily in juveniles. Although different patterns in the spacing of increments were found among juveniles collected at different locations and times, the widest increments were always found in the first 40 increments. Strontium: calcium (Sr: Ca) ratios increased with age in the otoliths of most wild G. elevata .
The patterns of increment width and Sr: Ca ratios were not related and, therefore, were probably not under the same relative control by environmental or physiological factors. Although the number of increments can be used to age juvenile G. elevata , the utility of increment widths and Sr: Ca ratios as environmental predictors in this species is questionable without experimental validation.     

Seed,dispersal, microsite,habitat and recruitment limitation: identification of terms and concepts in studies of limitations

Recently, there is an increase in number of studies concerned with the effect of various types of limitations on species local population size and distribution pattern at the landscape scale. The terminology used to describe these limitations is, however, very inconsistent. Since the different terms often appear in conclusions of the papers, the inconsistency in their use obscures the message of these papers. In this study, we review the current uses of these terms, identify the basic concepts involved in the discussion of a limitation and link the concepts with the currently used terms. Finally, we discuss the experimental approaches used to assess the different types of limitations. We differentiated four basic concepts resulting from the combination of limitation by environment versus ability to grow and spread, and two spatial scales (local and regional scale). The two concepts at each spatial scale are expected to form a gradient of all possible combinations of the two respective types of limitations. In the considerations of various experimental approaches used to assess these limitations, we conclude that sowing experiments, i.e. seed addition into existing populations or seed introduction into unoccupied habitats, are the only reliable types of evidence for the different types of limitations.     

Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies

The evolutionary history of a population involves changes in size, movements and selection pressures through time. Reconstruction of population history based on modern genetic data tends to be averaged over time or to be biased by generally reflecting only recent or extreme events, leaving many population historic processes undetected. Temporal genetic data present opportunities to reveal more complex population histories and provide important insights into what processes have influenced modern genetic diversity. Here we provide a synopsis of methods available for the analysis of ancient genetic data. We review 29 ancient DNA studies, summarizing the analytical methods and general conclusions for each study. Using the serial coalescent and a model-testing approach, we then re-analyse data from two species represented by these data sets in a common interpretive framework. Our analyses show that phylochronologic data can reveal more about population history than modern data alone, thus revealing 'cryptic' population processes, and enable us to determine whether simple or complex models best explain the data. Our re-analyses point to the need for novel methods that consider gene flow, multiple populations and population size in reconstruction of population history. We conclude that population genetic samples over large temporal and geographical scales, when analysed using more complex models and the serial coalescent, are critical to understand past population dynamics and provide important tools for reconstructing the evolutionary process.     

Natural products as sources of new fungicides (V): Design and synthesis of acetophenone derivatives against phytopathogenic fungi in vitro and in vivo

A series of acetophenone derivatives (10a–10i, 11, 12a–12g, 13a–13g, 14a–14d and 15a–15l) were designed, synthesized and evaluated for antifungal activities in vitro and in vivo. The antifungal activities of 53 compounds were tested against several plant pathogens, and their structure–activity relationship was summarized. Compounds 10a–10f displayed better antifungal effects than two reference fungicides. Interestingly, the most potent compound 10d exhibited antifungal properties against Cytospora sp., Botrytis cinerea, Magnaporthe grisea, with IC₅₀ values of 6.0–22.6?µg/mL, especially Cytospora sp. (IC₅₀?=?6.0?µg/mL). In the in vivo antifungal assays, 10d displayed the significant protective efficacy of 55.3% to Botrytis cinerea and 73.1% to Cytospora sp. The findings indicated that 10d may act as a potential pesticide lead compound that merits further investigation.     

New conformationally locked thioderivatives of mannose: synthesis, applications, and mechanistic studies

Tetrathiomolybdate has been used as an efficient sulfur-transfer reagent in the synthesis of a number of thiolevomannosan derivatives having an axial-rich 1C4 conformation. An unprecedented synthesis of a novel thioorthoester and its synthetic utility in glycosylation has been demonstrated. This is a general and efficient method for the synthesis of conformationally locked thiosugars.     

The Evolving Role of Botanical Gardens and Natural Areas: A Floristic Case Study from Royal Botanical Gardens, Canada

As leaders calling for the conservation of the world's plants, botanical gardens protect plants within living collections. Many also study, manage and restore plants in natural habitats. Royal Botanical Gardens (Ontario,Canada) has integrated both horticultural and natural heritage in its mission for decades. Envisioned by municipal leaders in the 1920s as a combination of nature sanctuaries and civic gardens, RBG now includes forests, wetlands and other habitats, gardens and built spaces. Today RBG is Canada's largest botanical garden on the basis of area.In the 1950s RBG began to inventory plant diversity. The checklist of spontaneous vascular plants now exceeds 1 170 species, of which 752 are native. This is 37% of Ontario's native vascular plants and 19% of the native vascular flora of Canada. The RBG nature sanctuaries are among the richest locations in Canada for species-level diversity.We examine the history of fioristic exploration within RBG and compare plant species-area relationships among protected natural areas in Ontario. This comparison supports the contention that the nature sanctuaries, and in particular Cootes Paradise, could be considered an important area for plants in Canada, and relative to the nation's flora, a biodiversity hotspot. The fact that a candidate vascular plant hotspot for Canada lies within a major botanical garden presents opportunities for raising public awareness of the importance of plant diversity, as well as focusing attention on the scientific and conservation biology needs of communities and individual species in this area.     

Sources,fates, and impacts of nitrogen inputs to terrestrial ecosystems: review and synthesis

The relative importance of nitrogen inputs from atmospheric deposition and biological fixation is reviewed in a number of diverse, non-agricultural terrestrial ecosystems. Bulk precipitation inputs of N (l–l2 kg N ha^–1 yr^–1) are the same order of magnitude as, or frequently larger than, the usual range of inputs from nonsymbiotic fixation (< 1=" –=" 5=" kg=" n=">^–1 yr^–1), especially in areas influenced by industrial activity. Bulk precipitation measurements may underestimate total atmospheric deposition by 30–40% because they generally do not include all forms of wet and dry deposition. Symbiotic fixation generally ranges from 10–160 kg N ha^–1 yr^–1) in ecosystems where N-fixing species are present during early successional stages, and may exceed the range under unusual conditions.Rates of both symbiotic and nonsymbiotic fixation appear to be greater during early successional stages of forest development, where they have major impacts on nitrogen dynamics and ecosystem productivity. Fates and impacts of these nitrogen inputs are important considerations that are inadequately understood. These input processes are highly variable in space and time, and few sites have adequate comparative information on both nitrogen deposition and fixation.

Root:shoot ratios of old and modern,tall and semi-dwarf wheats in a mediterranean environment

A field study tested the hypothesis that modern wheat varieties invest a lesser proportion of the total dry matter (root plus shoot) in the root system compared to old varieties. The study was carried out on a duplex soil (sand over clay) at Merredin, Western Australia in a Mediterranean type environment. We also compared the root:shoot dry matter ratios of near-isogenic lines for Rht dwarfing genes.Root:shoot ratios decreased with crop growth stage and were closely related to the developmental pattern of a variety. All varieties appeared to accumulate more dry matter into shoots after the terminal spikelet stage. For the modern variety Kulin this occurred as early as 55 days after sowing (DAS), but did not occur until 90 DAS in the old variety Purple Straw. For all varieties, root dry matter reached its maximum at anthesis, while shoot dry matter continued to increase till maturity. At anthesis there were no significant differences in shoot dry matter between varieties, but from Purple Straw to Kulin root dry matter and thus root:shoot ratio decreased.The tall and dwarf isogenic lines had similar developmental and root:shoot dry matter accumulation patterns.At anthesis, the old variety Purple Straw had significantly higher root dry matter and root length density in the top 40-cm of the profile than modern variety Kulin. There were no varietal differences in rooting depth, water extraction or water use. At maturity about 30% of the total dry matter was invested in the roots among wheat varieties. Grain yield, harvest index (HI) and water use efficiency of grain (WUE_gr) increased from old to modern varieties.The reduced investment of dry matter in the root system and thus the lower root:shoot ratio from early in the growing season may partly explain the increased HI and WUE_gr of modern compared to old varieties.     

Allometry, biomass, and productivity of mangrove forests: A review

We review 72 published articles to elucidate characteristics of biomass allocation and productivity of mangrove forests and also introduce recent progress on the study of mangrove allometry to solve the site- and species-specific problems. This includes the testing of a common allometric equation, which may be applicable to mangroves worldwide. The biomass of mangrove forests varies with age, dominant species, and locality. In primary mangrove forests, the above-ground biomass tends to be relatively low near the sea and increases inland. On a global scale, mangrove forests in the tropics have much higher above-ground biomass than those in temperate areas. Mangroves often accumulate large amounts of biomass in their roots, and the above-ground biomass to below-ground biomass ratio of mangrove forests is significantly low compared to that of upland forests (ANCOVA, P < 0.01). Several studies have reported on the growth increment of biomass and litter production in mangrove forests. We introduce some recent studies using the so-called “summation method” and investigate the trends in net primary production (NPP). For crown heights below 10 m, the above-ground NPP of mangrove forests is significantly higher (ANOVA, P < 0.01) than in those of tropical upland forests. The above-ground litter production is generally high in mangrove forests. Moreover, in many mangrove forests, the rate of soil respiration is low, possibly because of anaerobic soil conditions. These trends in biomass allocation, NPP, and soil respiration will result in high net ecosystem production, making mangrove forests highly efficient carbon sinks in the tropics.