Host-pathogen interactions in natural populations of Linum marginale and Melampsora lini

Summary The epidemiology of rust caused by the fungus Melampsora lini and the effects of infection by this pathogen on its host, the herbaceous perennial Linum marginale, were determined in the field and in garden experiments. There was considerable natural variability in disease levels over the four years (1986–1989) of the study. In two years (1986, 1989) major rust epidemics occurred. In the field, the main effect of disease was to reduce survivorship during the winter following infection. Plants which were heavily infected during the 1986 or 1989 growing seasons had reduced survivorship relative to more lightly infected plants. Melampsora lini infections did not appear to affect survivorship in either 1987 or 1988. Flowering was correlated with environmental factors and the number of stems a plant possessed. A severe drought in 1987 completely inhibited flowering. In the other three years the number of flowers produced by a plant was strongly positively correlated with the number of stems it possessed. Disease levels had no consistent effect on flowering. Controlled garden experiments were also used to examine the response of seedlings and adult plants to infection. These showed that both the timing and severity of disease appears to determine the effect of M. lini infections on L. marginale. Early, severe infection reduced growing season and overwintering survivorship as well as capsule production. However, plants in the field were most often infected only after flowering had begun, and the predominant effect of infection was a reduction in overwintering survivorship. The high variability in disease levels from year to year and the deferred nature of the effect of the rust on its host have significant implications for the design of experiments aimed at assessing the role of diseases in plant communities.     

Genetic structure and population dynamics of a heteroecious plant pathogen Melampsora larici-epitea in short-rotation coppice willow plantations

Complex life strategies are common among plant pathogens belonging to rust fungi ( Uredinales ). The heteroecious willow rust Melampsora larici-epitea produces five spore stages and alternates on larch ( Larix ). To shed light on the epidemiology of this pathogen, amplified fragment length polymorphisms (AFLPs) were used to determine the genetic diversity and genetic structure of rust samples collected from coppice willow ( Salix ) plantations at three UK sites (LA, CA and MC) over three sampling dates (September 2000, July 2001 and September 2001). Of the total of 819 isolates, 465 were unique AFLP phenotypes and there was a shift in genotype diversity between the two seasons (0.67 in 2000 and 0.87–0.89 in 2001). No phenotypes were common between the two seasons within a site, suggesting that the rust did not overwinter as an asexual stage within plantations. A temporal analysis detected large amounts of genetic drift ( F _S = 0.15–0.26) between the two seasons and very small effective population sizes ( N _e  =  2–3) within sites. These results all point to a new colonization of the plantations by the rust in the second season (2001). The F _ST-analogue values were Φ_CT = 0.121, Weir and Cockerham's θ = 0.086 and the Bayesian estimate θ^B = 0.087–0.096. The results suggest that the sources of inoculum were somewhat localized and the same sources were mainly responsible for disease epidemics in LA and CA over the two seasons. The relatively low F _ST-values among sites (0.055–0.13) suggest the existence of significant gene flow among the three sampled sites.     

Role of abiotic factors on the severity of stripe rust of wheat

During last decades, stripe rust has emerged as a major disease of wheat causing considerable yield loss in northern western plain and northern hill zones of India. Considering significant impact of the disease on wheat crop, field experiments were conducted during rabi seasons of 2013 and 2015 to evaluate the effect of different abiotic factors in different varieties (HD 2967, RSP 561, Agra Local and PBW 343) on the progress and spread of the disease as well as development of a predictive model to predict the disease initiation and spread in the field. Statistical analysis of data revealed that existing of low temperature (10–12 °C), high relative humidity (90%) along with intermittent rainfall was found conducive for disease onset. Thermic variables (atmospheric, canopy and soil temperature) along with age of crop in the selected varieties showed significant positive correlation with disease severity. Step-wise regression showed high R² of 0.919, 0.885, 0.967 and 0.956 for the predicative model of stripe rust in RSP 561, HD 2967, Agra Local and PBW 343, respectively.     

Studies of the incidence, severity and distribution of false rust (Synchytrium psophocarpi), leaf spot (Pseudocercospora psophocarpi) and powdery mildew (Oidium sp.) on winged bean (Psophocarpus tetragonolobus) in Papua New Guinea

The incidence, severity and distribution of false rust, (Synchytrium psophocarpi), leaf spot (Pseudocercospora psophocarpi) and powdery mildew (Oidium sp.) on winged beans (Psophocarpus tetragonolobus) were evaluated on pure lines and mixed stands grown in Papua New Guinea between 1976 and 1978. Almost all of the 148 pure lines were susceptible to false rust and leaf spot and the incidence of these diseases increased with plant age. Standard area diagrams were superior to disease keys in evaluating disease severity. Levels of false rust on 10 promising agronomic lines differed according to the locality where the lines were grown. Two Thai lines showed resistance to false rust but P. scandens was immune to false rust and leaf spot. Surveys of 51 sites containing mixed stands of winged beans in the Eastern Highlands, Western Highlands, East New Britain, East Sepik, Madang and Morobe Provinces of Papua New Guinea indicated that leaf spot and false rust were present in both the wet and dry seasons and the apparent absence of disease was probably due to time and size of samples. The diseases appeared to be present in all the traditional winged bean growing areas of Papua New Guinea. It was difficult to obtain evidence of differences in palatability of tissues infected with false rust. The value of surveys and disease assessment in relation to evaluation of crop losses of winged bean caused by these pathogens and selection for resistance is discussed.     

A method to forecast the start of theBetula, Platanus andQuercus pollen seasons in North London

This paper attempts the prediction of the start of theBetula, Quercus andPlatanus pollen seasons in London, UK based on pollen sampling conducted over a 5-year period, 1987–1991. The times at which eight different thresholds of accumulated daily pollen counts (M⁻³) were passed were correlated against heat sums, chill units, accumulated sunshine hours, monthly meteorological parameters and the start dates of earlier pollen seasons to identify significant associations. Few meteorological parameters were significantly correlated with the start dates of the three pollen seasons, the exceptions being significant negative correlations between the average monthly air temperature in the months immediately preceding theBetula andPlatanus pollen season. However, significant relationships were identified between the start dates of theBetula, Quercus andPlatanus pollen seasons and the start of theCorylus, Taxus andPopulus pollen seasons with coefficients of determination as high as 98%. These indicator species were then used as predictors to forecast the start of theBetula, Quercus andPlatanus pollen seasons, both individually and in combination with one another, providing levels of explanation of up to 99%.     

Yield Loss Associated with Soya Bean Rust (Phakopsora pachyrhizi Syd.) in Uganda

Studies were conducted to quantify the yield loss attributable to soya bean rust, a relatively new disease in Uganda. This was carried out for three consecutive seasons in the central, eastern, northern and western parts of the country, using three commercial varieties (Nam 1, Nam 2 and Namsoy 3) and two elite varieties (UG‐5 and GC‐00138‐29). The commercial varieties recorded higher yield losses (26.9–36.3%) and higher rust severities >50%, whereas the elite varieties recorded lesser yield losses of <10% and rust severities of <30%. Yield losses were highest in the central region (22.9%), and lowest in the northern region (15.1%). Yield losses differed significantly between seasons and were associated with reduction in seed weight and filled pod per plant.     

Seasonal changes in food resource distribution and feeding sites selected by Japanese macaques on Koshima Islet,Japan

Feeding sites of Japanese macaques (Macaca fuscata) change according to seasonal fluctuations in food resource distribution. To examine what characteristics of food items affect feeding site selection, I describe herein the seasonal changes in food items, feeding sites, and food resource distributions of this species. Feeding behavior of monkeys and their food resource distributions were investigated on Koshima Islet, southern Japan, for four study periods (i.e., seasons) in 2002. Monkeys showed large variations in their diet between seasons. To weigh the relative influence of the distribution and abundance of food items on feeding site selection in each season, multiple regression analyses were performed by 100 m × 100 m grid. In the analyses, feeding time was a dependent variable and the abundance of staple food items, for which feeding time was over 5% in each season, in each grid square was an independent variable. There was no correlation between the resource distribution of most food items and the distribution of feeding time by monkeys in each season. Monkeys spent more feeding time where multiple staple food items were available. Food items that affected feeding site selection by monkeys had the following three characteristics: (1) clumped distribution, (2) seasonal availability, and (3) fruit. This suggests that monkeys are likely to select feeding sites to consume food items whose availability is limited temporally and spatially, which may enable them to simultaneously use other widely distributed, abundant food items efficiently.     

Spatial and temporal patterns of home range use by olive baboons (Papio anubis) in eastern Laikipia,Kenya

The study investigated the relationship between topography, seasonal food availability and home range use by a troop of olive baboons (Papio anubis) in a dry savannah environment. Valleys were the most utilized parts of the home range in dry seasons while old boma sites were more frequently used in the wet season. Herb‐layer food biomass decreased significantly in dry seasons. The flowers of both Acacia tortilis and Acacia etbaica were available only in dry seasons with valleys having the highest biomass. The biomass of Acacia nilotica seeds was higher in valleys than on other locations. Leaves of the shrub Lycium europaeum were available on all locations in the wet season but valleys had the highest biomass of this food type. Herb‐layer baboon food biomass at ridge tops, slopes, valleys and old boma sites showed similar trends in productivity between seasons. Baboons tracked food along the soil catenas by feeding at ridge tops and old boma sites where foods were available during the wet season and exploiting food sources at the valleys during the dry seasons. Food availability was related to the catena effect and baboons used the catenas in the home range in a predictable manner.     

Time Course Field Analysis of COMT-Downregulated Switchgrass: Lignification,Recalcitrance, and Rust Susceptibility

Modifying plant cell walls by manipulating lignin biosynthesis can improve biofuel yields from lignocellulosic crops. For example, transgenic switchgrass lines with downregulated expression of caffeic acid O-methyltransferase, a lignin biosynthetic enzyme, produce up to 38 % more ethanol than controls. The aim of the present study was to understand cell wall lignification over the second and third growing seasons of COMT-downregulated field-grown switchgrass. COMT gene expression, lignification, and cell wall recalcitrance were assayed for two independent transgenic lines at monthly intervals. Switchgrass rust (Puccinia emaculata) incidence was also tracked across the seasons. Trends in lignification over time differed between the 2 years. In 2012, sampling was initiated in mid-growing season on reproductive-stage plants and there was little variation in the lignin content of all lines (COMT-downregulated and control) over time. COMT-downregulated lines maintained 11–16 % less lignin, 33–40 % lower S/G (syringyl-to-guaiacyl) ratios, and 15–42 % higher sugar release relative to controls for all time points. In 2013, sampling was initiated earlier in the season on elongation-stage plants and the lignin content of all lines steadily increased over time, while sugar release expectedly decreased. S/G ratios increased in non-transgenic control plants as biomass accumulated over the season, while remaining relatively stable across the season in the COMT-downregulated lines. Differences in cell wall chemistry between transgenic and non-transgenic lines were not apparent until plants transitioned to reproductive growth in mid-season, after which the cell walls of COMT-downregulated plants exhibited phenotypes consistent with what was observed in 2012. There were no differences in rust damage between transgenics and controls at any time point. These results provide relevant fundamental insights into the process of lignification in a maturing field-grown biofuel feedstock with downregulated lignin biosynthesis.     

Latitudinal variation in resistance and tolerance to herbivory in the perennial herb Lythrum salicaria is related to intensity of herbivory and plant phenology

Both the length of the growing season and the intensity of herbivory often vary along climatic gradients, which may result in divergent selection on plant phenology, and on resistance and tolerance to herbivory. In Sweden, the length of the growing season and the number of insect herbivore species feeding on the perennial herb Lythrum salicaria decrease from south to north. Previous common‐garden experiments have shown that northern L. salicaria populations develop aboveground shoots earlier in the summer and finish growth before southern populations do. We tested the hypotheses that resistance and tolerance to damage vary with latitude in L. salicaria and are positively related to the intensity of herbivory in natural populations. We quantified resistance and tolerance of populations sampled along a latitudinal gradient by scoring damage from natural herbivores and fitness in a common‐garden experiment in the field and by documenting oviposition and feeding preference by specialist leaf beetles in a glasshouse experiment. Plant resistance decreased with latitude of origin, whereas plant tolerance increased. Oviposition and feeding preference in the glasshouse and leaf damage in the common‐garden experiment were negatively related to damage in the source populations. The latitudinal variation in resistance was thus consistent with reduced selection from herbivores towards the northern range margin of L. salicaria. Variation in tolerance may be related to differences in the timing of damage in relation to the seasonal pattern of plant growth, as northern genotypes have developed further than southern have when herbivores emerge in early summer.     

Large scale geographic clines of parasite damage to Populus tremula L.

According to the geographic mosaic theory of coevolution (GMTC), clines of traits reflecting local co‐adaptation (including resistance genes) should be common between a host and its parasite and should persist across time. To test the GMTC‐assumption of persistent clinal patterns we compared the natural prevalence of two parasites on aspen Populus tremula trees: mining moths of the genus Phyllocnistis and leaf rust Melampsora spp. Damage data were collated from the Swedish National Forest Damage Inventory (2004–2006). In addition, occurrence of the parasites was scored in field conditions in two common gardens in the north and south of Sweden over five growing seasons (2004–2008), then related to biomass (stem height and diameter) and to concentrations of eleven leaf phenolics. Phyllocnistis mainly occurred in the northern garden, a distribution range which was confirmed by the countrywide inventory, although Phyllocnistis was more abundant on southern clones, providing evidence for possible local maladaptation. Melampsora occurred all over the country and in both gardens, but built up more quickly on northern clones, which suggests a centre of local clone maladaptation in the north. Stem growth also followed a clinal pattern as did the concentration of three phenolic compounds: benzoic acid, catechin and cinnamic acid. However, only benzoic acid was related to parasite presence: negatively to Phyllocnistis and positively to Melampsora and it could thus be a potential trait under selection. In conclusion, clines of Phyllocnistis were stronger and more persistent compared to Melampsora, which showed contrasting clines of varying strength. Our data thus support the assumption of the GMTC model that clines exist in the border between hot and cold spots and that they may be less persistent for parasites with an elevated gene flow, and/or for parasites which cover relatively larger hot spots surrounded by fewer cold spots.     

Atmospheric teleconnection patterns associated with wheat stripe rust disease in North China

 Previous work has shown that long-term (>40 years) time series of wheat stripe rust disease from North China contain a signal related to the Southern Oscillation Index (SOI). However, no cause-and-effect relationships or direct links between SOI and disease have been established. Because mid-latitude teleconnection patterns form important links between global atmospheric variations and regional weather anomalies, such as the Southern Oscillation, studies of such patterns could result in a better physical and biological interpretation for the SOI-disease association observed previously. We used cross-spectral analyses to determine if and on which time scales severity of stripe rust in five regions of North China between 1952 and 1990 was associated with fluctuations in four Northern Hemisphere teleconnection patterns. These included the Pacific/North American, the Western Atlantic, the Western Pacific, and the Eurasian patterns. The analysis showed consistent and significant (P≤0.10) coherence relationships between the Western Atlantic (WA) pattern and stripe rust severity at a periodicity of 3.00 years. The phase relationships showed that, at the 3.00-year periodicity, the WA series and the disease series were out of phase by about half a period in all five regions. This phase difference indicated that peaks in the WA series, which are associated with below-normal winter temperatures over much of China, coincided with troughs in the disease series (i.e. low disease severity), presumably because of the negative effect of low winter temperatures on survival of the stripe rust pathogen. The analysis further showed that the WA series and the SOI series were highly significantly (P≤0.01) coherent at a periodicity of 4.33 years, which could explain the association between SOI and stripe rust severity reported previously. Received: 12 February 1997 / Accepted: 18 May 1998     

Feeding behaviour and diet composition of Marsh Harriers Circus aeruginosus in agricultural landscapes

Capsule Diet composition and feeding behaviour of breeding birds differed between areas of high and low agricultural intensification.

Aims To analyze diet composition and feeding behaviour of Marsh Harriers Circus aeruginosus in agricultural landscapes with different degrees of agricultural intensification.

Methods Diet composition and feeding behaviour was assessed by focal observations at nests during breeding seasons in 2001–03 in two agricultural areas within the eastern Ebro Basin (on the northern Iberian Peninsula) which differed in their degree of agricultural intensification: a traditional non-irrigated and non-intensively managed farmland area; and an irrigated and intensively managed farmland area.

Results Marsh Harriers in the intensively managed area took higher percentages of small mammals than harriers in the traditional area managed at low-intensity, where they also had a more diverse diet. Male delivery rates increased throughout the breeding season in the intensively managed area. On the contrary, no significant trend in delivery rates was observed in the traditional area, where harriers turned to larger prey late in the season.

Conclusion Marsh Harriers probably took advantage of different prey types in intensively managed and traditional farmland according to prey availability. Differences in diet composition seem to be related to different foraging strategies adopted by harriers in traditional and intensively managed farmlands. In the traditionally managed farmlands, harriers responded to increases in the energy requirements of the brood over the course of the breeding season by taking larger prey, whereas in the intensively managed farmlands harriers increased feeding rates.     

Evaluation of Certain Cowpea Genotypes for Partial Resistance to Powdery Mildew (Erysiphe polygoni)

Partial resistance to powdery mildew (Erysiphe polygoni) in twenty one cowpea cultivars was assessed over two to three seasons under field conditions. Mildew incidence was recorded as number of leaflets affected/plant and severity as AUDPC or infection rate using Gompertz transformation. Irrespective of the parameter used to measure mildew resistance or the season, mean response of cvs V-105, V-269, V-276, V-282 and V-385 showed clear slow-mildewing, while RC-48, S-488, TVX-944-02E, V-27, V-36 and V-118 were rated as susceptible. Mildew resistance in some cultivars was negatively correlated with that for the leaf rust (Uromyces vignae). AUDPC was a more robust disease parameter than infection rate and showed a good correlation (r²= 0.79) with incidence.     

The Value of Immaculate Mates: Relationships between Plumage Quality and Breeding Success in Shelducks

Immaculateness, a novel measure of bird plumage quality, defined as the regularity of the borders of a coloured patch of feathers, and the uniformity of the colour within the patch, tends to decline as a result of feather wear and damage. If it declines more quickly amongst birds in poor condition, it has the potential to act as an honest signal of individual quality and therefore be subject to social and sexual selection. We scored plumage immaculateness in shelducks Tadorna tadorna, based on the absence of white feathers in the red-brown chest band and the evenness of the band's border. We monitored body condition and plumage quality in birds at feeding sites in the Severn Estuary (UK) during the early breeding season when females were forming eggs, and later in the season when chicks arrived. Drakes had more immaculate chest bands than ducks. At preferred feeding sites, drakes were more immaculate, and birds of both sexes were in better body condition. Birds with more immaculate plumage tended to mate assortatively at preferred sites and were more likely to produce a brood that survived the journey to the feeding areas. Immaculateness could therefore be an honest signal of parental quality. Although our evidence is only correlational, we suggest that plumage immaculateness indicates the ability to establish and maintain control over the best breeding sites and feeding territories in the face of competition with other shelducks.     

Temperature and Leaf Wetness Effects on Infection of Sugarcane by Puccinia melanocephala

Brown rust epidemics in sugarcane, caused by Puccinia melanocephala, vary in severity between seasons. To improve the understanding of disease epidemiology, the effects of leaf wetness, temperature and their interaction on infection of sugarcane by the pathogen were studied under controlled conditions. Disease severity was low at 15 and 31°C regardless of leaf wetness duration. No infection occurred with a 4‐h leaf wetness period. Increasing leaf wetness duration from 7 to 13 h lowered the temperature required for disease onset from 21 to 17°C. More infection occurred with 13 compared to 10 h of leaf wetness at 17°C, and severity decreased for all leaf wetness periods at 29 compared to 27°C. Postinfection suboptimal low and high temperatures increased the time required for lesion development and high temperatures decreased maximum disease severity. The observed effects of leaf wetness and temperature on infection by P. melanocephala could help explain the initiation, rate of increase and decline of brown rust epidemics in the field.     

The Integrated Aerobiology Modeling System applied to the spread of soybean rust into the Ohio River valley during September 2006

Soybean rust (Phakopsora pachyrhizi) has recently invaded North America and has the potential to be the most destructive foliar disease of soybean. As part of the response to this threat, the Integrated Aerobiology Modeling System (IAMS) was constructed to forecast the aerial movement of this pathogen from subtropical to middle latitude portions of the continent. IAMS simulations have been conducted daily for the past two growing seasons and integrated with information from a nationwide observation network into a decision support system for soybean farmers. After the 2005 season, the United States Department of Agriculture reported that many millions of United States (U.S.) soybean hectares that would have been treated for soybean rust in 2005 were not due to this decision support system. In 2006, soybean rust appeared for the first time in the major U.S. soybean production region over 1000 km from known areas of inoculum production. IAMS predictions of the geographical extent and timing of disease symptom expression were well matched with subsequent observations of the disease in the field.     

SRAP Technique Efficiently Generates Polymorphisms in Puccinia striiformis Isolates

Wheat stripe rust, caused by the fungal pathogen Puccinia striiformis f.sp. tritici (PST), is a major disease of wheat in temperate‐cold climates. The identification of new markers would ease the procedure for evaluating the ongoing pathogen evolution. Twelve single pustule isolates were generated from samples of PST obtained in UK during 1987–2001. They were evaluated for their pathogenic behaviour on a set of differential cultivars and were analysed by sequence‐related amplified polymorphisms (SRAP) technique, to identify polymorphisms useful to evaluate variability among isolates. This is the first report of the application of SRAP technique to Uredinales order.     

Relationship between onion thrips (Thrips tabaci) and Stemphylium vesicarium in the development of Stemphylium leaf blight in onion

Stemphylium leaf blight caused by Stemphylium vesicarium and onion thrips (Thrips tabaci) are two common causes of leaf damage in onion production. Onion thrips is known to interact synergistically with pathogens to exacerbate plant disease. However, the potential relationship between onion thrips and Stemphylium leaf blight is unknown. In a series of controlled laboratory and field trials, the relationship between thrips feeding and movement on the development and severity of Stemphylium leaf blight were examined. In laboratory assays, onions (“Avalon” and “Ailsa Craig”) with varying levels of thrips feeding damage were inoculated with S. vesicarium. Pathogen colonisation and leaf dieback were measured after 2 weeks. In pathogen transfer assays, thrips were exposed to S. vesicarium conidia, transferred to onion and leaf disease development was monitored. In field trials, insecticide use was examined as a potential indirect means to reduce Stemphylium leaf blight disease and pathogen colonisation by reducing thrips damage. Results from laboratory trials revealed that a reduction in thrips feeding decreased S. vesicarium colonisation of onion leaves by 2.3–2.9 times, and decreased leaf dieback by 40–50%. Additionally, onion thrips were capable of transferring S. vesicarium conidia to onion plants (albeit at a low frequency of 2–14% of plants inoculated). In field trials, the symptoms and colonisation of Stemphylium leaf blight were reduced by 27 and 17%, respectively with the use of insecticide to control thrips. These results suggest that onion thrips may play a significant role in the development of Stemphylium leaf blight, and thrips control may reduce disease in commercial onion fields.     

Effects of Temperature and Moisture Variables on Brown Rust Epidemics in Sugarcane

Epidemics of brown rust in sugarcane, caused by Puccinia melanocephala, vary in severity between seasons. Natural epidemics were studied to determine the effects of temperature and moisture variables on epidemic onset, severity and decline. Variables were monitored with disease severity in two cultivars, each grown at a different location in Louisiana. Maximum daily temperature was the variable most correlated with seasonal epidemic development and decline. Disease severity was high during 2009 and low during 2010. This contrast allowed evaluation of the effects of conducive and limiting environmental conditions on severity. Lower severity resulted from a combination of unfavourable temperature and leaf wetness conditions that delayed onset then reduced the rate of disease increase. An accumulation of 23–25 days with leaf wetness periods of at least 7 h after the daily minimum temperature exceeded 17°C preceded the onset of disease on young leaves in both severe and mild epidemics. Severe epidemics in both cultivars declined once maximum ambient daily temperature was 32°C or higher. Low and high limiting temperatures determined the initiation and decline of an epidemic, respectively, under Louisiana climatic conditions. The availability of leaf wetness was then an important determinant of disease severity during the epidemic.