The Atlantic elements in the Swiss flora: distribution, diversity, and conservation status

The purpose of this study was to examine the composition, distribution, ecology, and conservation status of the Atlantic elements of the Swiss flora. About 195 Atlantic and 80 Mediterranean–Atlantic vascular plant species of the European flora have been used as the basis for our analysis. The complete list of 3,143 taxa has been used as the reference for the Swiss flora. The distributions of the species are illustrated in coincidence maps based on the computer database of the Data Centre of the Swiss Flora in Geneva, Switzerland. Our study demonstrates clearly that the Atlantic flora of Europe requires a new biogeographical appraisal. The Swiss flora comprises 66 Atlantic and Mediterranean–Atlantic taxa, which are taxonomically and ecologically highly diverse. Switzerland contains 44% of all European Sub-Atlantic plants. This confirms the Sub-Atlantic geographical position of Switzerland. Only one Eu-Atlantic species growing in Switzerland, Vicia orobus, can be classified as native with certainty. This species is critically endangered and merits the highest conservation priority. Although a very alpine country, Switzerland has a relatively large number of Mediterranean–Atlantic species. The Atlantic and Mediterranean–Atlantic plants are a very threatened group in Switzerland, with wetland plants the most imperilled ecological group. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The fishery,biology, and management of Atlantic sturgeon,Acipenser oxyrhynchus,in North America

Synopsis The Atlantic sturgeon supported major fisheries along the entire Atlantic coast of North America. These fisheries peaked about 1890 and then suffered almost total collapse by 1905. The Atlantic sturgeon is anadromous and highly susceptible to capture during spawning migrations. Further, this species biological characteristics makes it very vulnerable to man-induced changes in natural habitat and slow to recover. Atlantic sturgeon mature at an advanced age (7–27 year for females, depending on latitude), exhibit a long interspawning period (2–5 year), and require suitable riverine, estuarine, and coastal environments for successful completion of their life cycle. Today, only remnant stocks exist in areas of former abundance. Management regulations vary considerably from state to state and range from full protection to no protection. Biological data are needed to: identify and characterize specific spawning and nursery areas; delineate migratory patterns and recruitment to various stocks; establish stock abundance; and, assess effects of various management strategies. In order to protect remaining stocks, the imposition of a total harvesting moratorium is recommended.     

A meristic, morphometric and biochemical investigation of Atlantic menhaden, Brevoortia tyrannus (Latrobe)

Juvenile Atlantic menhaden, Brevoortia tyrannus , were collected from estuarine waters of the Atlantic coast of the United States. Those collected north of latitude 40°N had lower numbers of total and trunk vertebrae, ventral scutes and interhaemal spines, and shallower heads, smaller eyes, shorter predorsal lengths, and lower frequencies of the fastest allele observed at the transferrin locus than those collected south of Long Island. Although the evidence is still inconclusive, the potential for at least two subpopulations still exists: one which spawns in the spring and early summer and is responsible for the primary recruitment in the northern North Atlantic area, and one which spawns in the autumn and winter and contributes the majority of recruitment in the middle and southern North Atlantic areas of the United States.     

Postglacial history of Atlantic oakwoods: Context,dynamics and controlling factors

Summary

We present here a review of the recolonisation of the Atlantic oakwoods following the end of the last glacial period. The study is based on two independent data sources: palaeoecological and phylogeographical data. The spread of oak is examined at two scales: (1) continental, allowing a consideration of the location of glacial refugia and the broad outlines of the migration, (2) the Atlantic coastal region, in order to establish the specific history of the Atlantic oakwoods. Climatic and human controls on the timing, speed and pattern of spread are considered, in particular, the conditions of the early Holocene period during which the majority of the recolonisation took place.     

Status and management of Atlantic sturgeon, Acipenser oxyrinchus, in North America

The Atlantic sturgeon, Acipenser oxyrinchus, consists of two subspecies distributed along the Atlantic coast of North America from Labrador to the east coast of Florida (Atlantic sturgeon subspecies – A. o. oxyrinchus) and along the Gulf of Mexico from Florida Bay, Florida to the mouth of the Mississippi River (Gulf sturgeon subspecies – A. o. desotoi). The species has been exploited throughout its range with landings peaking around the turn of the 20th century followed by drastic declines shortly thereafter. During recent years, landings in Canadian waters have increased substantially (approximately 129 metric tons in 1993) while in the United States landings are more controlled or prohibited (approximately 22–24 metric tons in 1993). Recently, the Atlantic States Marine Fisheries Commission developed a Fishery management plan for Atlantic sturgeon, and the United States Fish & Wildlife Service and Gulf States Marine Fisheries Commission drafted a Gulf Sturgeon Recovery/Management Plan. Fishery managers in Canada are in the process of establishing more stringent fishery regulations for sturgeon. Thus, the impact on populations due to harvesting should be substantially reduced. Current research focus includes: life history and population status studies, stock delineation, and development of culture and stock enhancement techniques. Implementation of the findings of such studies may be helpful in the restoration of depleted stocks.     

Otolith shape discriminates between juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L.

Otoliths of Atlantic salmon, Salmo salar L., are more slender than the otoliths of brown trout, Salmo trutta L. Discriminant analysis on otolith measurements of juvenile Atlantic salmon and brown trout from four river systems revealed a discriminant function which distinguished more than 94% of the cases. This function was tested by using data from a fifth river with cohabiting Atlantic salmon and brown trout: all Atlantic salmon and 91 % of the brown trout were correctly classified.     

Multilocus Bayesian Estimates of Intra-Oceanic Genetic Differentiation,Connectivity, and Admixture in Atlantic Swordfish (Xiphias gladius L.)

Previous genetic studies of Atlantic swordfish (Xiphias gladius L.) revealed significant differentiation among Mediterranean, North Atlantic and South Atlantic populations using both mitochondrial and nuclear DNA data. However, limitations in geographic sampling coverage, and the use of single loci, precluded an accurate placement of boundaries and of estimates of admixture. In this study, we present multilocus analyses of 26 single nucleotide polymorphisms (SNPs) within 10 nuclear genes to estimate population differentiation and admixture based on the characterization of 774 individuals representing North Atlantic, South Atlantic, and Mediterranean swordfish populations. Pairwise F _ST values, AMOVA, PCoA, and Bayesian individual assignments support the differentiation of swordfish inhabiting these three basins, but not the current placement of the boundaries that separate them. Specifically, the range of the South Atlantic population extends beyond 5°N management boundary to 20°N-25°N from 45°W. Likewise the Mediterranean population extends beyond the current management boundary at the Strait of Gibraltar to approximately 10°W. Further, admixture zones, characterized by asymmetric contributions of adjacent populations within samples, are confined to the Northeast Atlantic. While South Atlantic and Mediterranean migrants were identified within these Northeast Atlantic admixture zones no North Atlantic migrants were identified respectively in these two neighboring basins. Owing to both, the characterization of larger number of loci and a more ample spatial sampling coverage, it was possible to provide a finer resolution of the boundaries separating Atlantic swordfish populations than previous studies. Finally, the patterns of population structure and admixture are discussed in the light of the reproductive biology, the known patterns of dispersal, and oceanographic features that may act as barriers to gene flow to Atlantic swordfish.     

Diversity and zoogeography of marine Tubificidae (Annelida,Oligochaeta) with notes on variation in widespread species

The specific and generic diversities of the marine Tubificidae (Annelida, Oligochaeta) of the NE Pacific are compared to those of the NE and NW Atlantic as well as to those of Heron Island, Australia. Diversity in the NE Pacific is relatively high when compared to that of the NE Atlantic. The Tubificidae of the NW Atlantic (limited to the eastern coast of the USA) show two distinct zoogeographic regions: Florida to Cape Hatteras; Cape Hatteras to Massachusetts. Diversity, both in terms of the number of species and number of genera, is approximately the same in these two regions, and is similar to that of both the NE Pacific and Heron Island. Evidence suggests that the widespread marine species, in particular Tubificoides pseudogaster, have a range of morphotypes across their distributions. The apparent wide distributions of these species may be due to a taxonomy unable to resolve the differences between the morphotypes. The tubificid oligochaete fauna of the NE Atlantic appears impoverished compared to the other regions examined. The NE Pacific, NW Atlantic, and Heron Island regions are not dominated by one group of species while the NE Atlantic fauna is dominated by Tubificoides benedeni and Clitellio arenarius.     

Areas of endemism for passerine birds in the Atlantic forest, South America

Aim To use the method of parsimony analysis of endemism to identify areas of endemism for passerine birds in the Atlantic Forest, South America, and to compare the locations of these areas with areas previously identified for birds as well as other taxa. Location The Atlantic Forest, eastern South America. Methods We analysed a matrix composed of the presence (1) or absence (0) of 140 endemic species in 24 quadrats of 1 × 1 degree distributed along the Atlantic Forest to find the most parsimonious area cladogram. Results Fourteen most parsimonious cladograms were found and then summarized in a single consensus tree. Four areas of endemism were identified: Pernambuco, Central Bahia, Coastal Bahia, and Serra do Mar. Main conclusions Avian areas of endemism in the Atlantic Forest have significant generality, as they are highly nonrandom and congruent with those of other groups of organisms. A first hypothesis about the historical relationships among the four areas of avian endemism in the Atlantic Forest is delineated. There is a basal dichotomy among areas of endemism in the Atlantic Forest, with Pernambuco forming a northern cluster and Coastal Bahia, Central Bahia and Serra do Mar comprising a southern cluster. Within the southern cluster, Central Bahia and Serra do Mar are more closely related to each other than to Coastal Bahia.     

Natural stranding of Atlantic sturgeon (Acipenser oxyrinchus Mitchill, 1815) in Scot's Bay,Bay of Fundy,Nova Scotia,from populations of concern in the United States and Canada

Natural mortality of Atlantic sturgeon (Acipenser oxyrinchus) has been determined to be low (M = 0.07). Reported herein is the mortality by beach stranding of 11 Atlantic sturgeon in Scot's Bay, part of the inner Bay of Fundy in Nova Scotia, Canada on 22 June 2014. Genetic analyses, histological analysis and age determination were performed to determine origin, maturity stage and age of the stranded Atlantic sturgeon. Microsatellite and mitochondrial DNA analyses indicated that four of the Atlantic sturgeon (2 males and 2 females) were from the Saint John River, NB population, which was designated as threatened by the Committee on the Status of Endangered Wildlife in Canada. Seven Atlantic sturgeon (1 male, 5 females, 1 unknown) were from the Kennebec River, Maine population, that was listed as threatened under the Endangered Species Act in the U. S. Ageing of A. oxyrinchus Atlantic sturgeon by pectoral fin spine analysis determined that the mean age of the individuals from the Saint John River (x? = 24.25 years, SD = 5.0) and the Kennebec River (x? = 22.7 years, SD = 3.5) were not significantly different. This is the first report of a stranding event of Atlantic sturgeon, and describes a source of natural mortality affecting populations of concern in both Canada and the U. S.     

Atlantic paleobathymetry, paleoproductivity and paleocirculation in the late Albian: the benthic foraminiferal record

Spatial distribution patterns of benthic foraminifers in upper Albian sediments from 25 DSDP/ODP sites and 31 onshore sections of the North and South Atlantic Ocean are used to generate paleobathymetric reconstructions and to identify areas of high primary production such as coastal and equatorial upwelling zones. New paleobathymetric estimates are provided for DSDP/ODP sites and onshore locations that are not situated on oceanic crust. Paleobathymetric reconstructions indicate shallow water exchange between the North and South Atlantic but show the existence of a deep-water connection between the western and eastern Tethys (>2500 m) through the Gibraltar Gateway. Strikingly, there is no evidence for a strong latitudinal gradient in deep-water benthic foraminiferal distribution during the late Albian: South Atlantic assemblages show close affinity to North Atlantic and Tethyan assemblages, exhibiting only a minor degree of provincialism. Biogeographic patterns reveal a distinct asymmetry in late Albian paleoproductivity for the North Atlantic. As for the present day, the eastern margins of the Atlantic were generally more productive than the western margins, and a belt of enhanced carbon flux export to the seafloor can be traced around the north African coast, which probably corresponded to a zone of vigorous coastal upwelling. By contrast, assemblage composition in the South Atlantic generally reflects mesotrophic to oligotrophic conditions. Benthic foraminiferal distribution patterns, thus, provide robust proxy data to test predictions from paleocirculation and paleobathymetric models for the mid-Cretaceous Atlantic Ocean and adjacent margins.     

World-wide latitudinal and longitudinal seaweed distribution patterns and their possible causes,as illustrated by the distribution of Rhodophytan genera

The degree of similarity between red algal generic floras in each pair of 22 climatically defined biogeographic regions was established on a world-wide scale by Jaccard's similarity index and by an hierarchical clustering with an agglomerative centroid method. Two clusterings were carried out, the first one on the basis of all 637 genera, and the second one on the basis of genera not occurring in the tropics and non-endemic to any one of the 22 regioms (145 genera). This latter clustering served to detect better the relationships among non-tropical floras. The results indicate the following division of the earth's rhodophytan seaweed floras: (1) A rich tropical-warm temperate "Tethyan" group including the rich tropical Indo W Pacific and W Atlantic floras, and the rich warm temperate NW Pacific and NE Atlantic floras; (2) the depauperate extensions of the above group (the tropical E Pacific and E Atlantic floras, and the warm temperate NW and SW Atlantic floras); (3) a cold temperate and a warm temperate N Pacific group; (4) an Arctic-cold temperate N Atlantic group and a NE Atlantic warm temperate flora; (5) an Antarctic-cold temperate southern hemisphere group including the cold temperate SE Pacific, SW Atlantic, SE Atlantic floras, and the Antarctic flora; (6) the two highly individual, but slightly related warm temperate SE Atlantic flora (S. Africa) and SW Pacific flora (Southern Australia and Northern New Zealand); (7) the depauperate warm temperate SE Pacific flora. Although the northern and southern hemisphere temperate and polar floras are quite unrelated (on the basis of genera lacking in the tropics), they share nonetheless a number of cool water genera which apparently have succeeded in passing the adverse tropical belt. The rich tropical-warm temperate group is thought to consist of vicariant portions of a formerly continuous Tethyan flora. The N Pacific and N Atlantic temperate floras are thought to have developed independently since the Oligocene (~ 40.10⁶ y) deterioration of the climate and to have partially mixed their cool water genera only after the Pliocene inundation (2.10⁶ y) of the Bering Land Bridge. The warm-temperate floras of S Africa and southern Australia probably owe their richness and individuality to a very long isolation (already at the start of the Cenozoicum) and a continued residence in warm temperate conditions with small seasonal fluctuations.Paper presented at the Seaweed Biogeography Workshop of the International Working Group on Seaweed Biogeography, held from 3–7 April 1984, at the Department of Marine Biology, University of Groningen (The Netherlands). Convenor: C. van den Hoek.     

Population genetic analyses are consistent with the introduction of Ceramium secundatum (Ceramiaceae,Rhodophyta) to Narragansett Bay,Rhode Island,USA

During ongoing DNA barcode (COI‐5P) surveys of the macroalgal flora along the northwest Atlantic coast, we discovered a population of Ceramium secundatum in Narragansett Bay, Rhode Island, USA. This species is regarded as common and widespread in the northeast Atlantic, ranging from Norway to Morocco, but until now has not been reported from the western Atlantic. Several lines of evidence suggest that C. secundatum may be introduced to Narragansett Bay: (1) despite extensive collecting, specimens have only been obtained from a limited geographic range in the northwest Atlantic; (2) three other nonindigenous seaweed species are reportedly introduced in this region, which is thought to be a consequence of shipping; and (3) this species is introduced to South Africa and New Zealand. To investigate this suspected introduction, we applied population genetic analyses (using the cox2‐3 spacer) to compare the Narragansett Bay C. secundatum population to native populations in the Republic of Ireland and the United Kingdom. Collectively, analyses of biogeographical and molecular data indicate that C. secundatum is likely introduced to Narragansett Bay. The implications of this discovery are discussed.     

Bioaccumulation of lithium by marine organisms in European, American, and Asian coastal zones: microanalytic study using secondary ion emission

37 species of aquatic mammals, fish, crustacea, annelids, molluscs belonging to cephalopods, gasteropods and lamellibranchs were collected from coastal waters of France: North Sea, English Channel, Atlantic Ocean, Mediterranean Sea, from Greece: Aegian Sea, from North America: Atlantic Ocean and from Japan: Pacific Ocean, Sea of Japan and East China Sea. Microanalyses which were performed on organs and tissues, using secondary ion mass spectrometry, revealed high concentrations of lithium, which is commonly used in human therapy, but is also toxic in low amounts. The retention of this metal by the marine organisms appears as a general phenomenon independent of their biotope and geographical origin; the highest lithium levels were detected in the fish muscles (= edible part).     

On Gaussia Wolfenden (Copepoda,Calanoida, Metridinidae)

Aspects of the female genital segment with and without attached couplers and enclosed spermatophores are studied of Gaussia specimens collected in the SW Atlantic and SE Pacific. A new species found in the SW Atlantic, Gaussia asymmetrica, is proposed.     

Molecular Phylogeny of the Parasitic Dinoflagellate Chytriodinium within the Gymnodinium Clade (Gymnodiniales,Dinophyceae)

The dinoflagellate genus Chytriodinium, an ectoparasite of copepod eggs, is reported for the first time in the North and South Atlantic Oceans. We provide the first large subunit rDNA (LSU rDNA) and Internal Transcribed Spacer 1 (ITS1) sequences, which were identical in both hemispheres for the Atlantic Chytriodinium sp. The first complete small subunit ribosomal DNA (SSU rDNA) of the Atlantic Chytriodinium sp. suggests that the specimens belong to an undescribed species. This is the first evidence of the split of the Gymnodinium clade: one for the parasitic forms of Chytriodiniaceae (Chytriodinium, Dissodinium), and other clade for the free‐living species.     

Colonization, dispersal, and hybridization influence phylogeography of North Atlantic sea urchins (Strongylocentrotus droebachiensis)

We used frequency-based and coalescent-based phylogeographic analysis of sea urchin (Strongylocentrotus droebachiensis) mitochondrial DNA (mtDNA) sequences and previously published microsatellite data to understand the relative influence of colonization and gene flow from older (north Pacific) and younger (northeast Atlantic) sea urchin populations on genetic variation in the northwest Atlantic. We found strong evidence of survival of northwestern Atlantic populations in local Pleistocene glacial refugia: most haplotypes were the same as or closely related to Pacific haplotypes, with deep gene genealogies that reflect divergence times within the northwestern Atlantic that are much older than the last glacial maximum. We detected gene flow across the North Atlantic in the form of haplotypes shared with or recently descended from European populations. We also found evidence of significant introgression of haplotypes from a closely related species (S. pallidus). The relative magnitude of gene flow estimated by coalescent methods (and the effective population size differences among oceanic regions) depended on the genetic marker used. In general, we found very small effective population size in the northeastern Atlantic and high trans-Arctic gene flow between the Pacific and northwestern Atlantic. Both analyses suggested significant back-migration to the Pacific. However, microsatellites more strongly reflected older Pacific migration (with similar effective population sizes across the Arctic), whereas mtDNA sequences appeared to be more sensitive to recent trans- Atlantic dispersal (with larger differences in effective population size). These differences across marker types might have several biological or methodological causes, and they suggest caution in interpretation of the results from a single locus or class of markers.     

Origin, diversification, and historical biogeography of the genus Trachurus (Perciformes: Carangidae)

We addressed phylogenetic relationships in the genus Trachurus using cytochrome b gene and D-loop sequences. The trees showed five groups: (1) the Southwest Pacific species (T. japonicus, T. novaezelandiae, and T. declivis); (2) The Mediterranean Sea and Eastern Atlantic species (T. mediterraneus); (3) The Atlantic Ocean species (T. lathami and T. trecae); (4) Eastern Atlantic species (T. trachurus and T. capensis); and (5) a group of highly mobile pelagic species, two from the Eastern Pacific (T. symmetricus and T. murphyi) and one from the Eastern Atlantic (T. picturatus). The phylogeny based on Cyt b, supports the molecular clock hypothesis and our results agree with the reported fossil indicating that the origin of this genus occur when the Thetys Sea closed (around 18.4 MYA). In addition, a very slow neutral substitution rate is reported identified only two periods of maximum diversification: the first occurring between 18.4 and 15.0 MYA and the second between 8.4 MYA and present day.