Analysis of expressed sequence tags (ESTs) from Lentinula edodes

The 1,031 expressed sequence tags (ESTs) from the basidiomycete Lentinula edodes were generated as a pilot experiment to see distribution of genes expressed in L. edodes. Among them, genes for hydrophobin, which are specifically found in filamentous fungi, were the most frequently obtained ESTs (33 times), suggesting that they are highly expressed in L. edodes. In addition to known hydrophobin 1 and 2 types, our analysis revealed the existence of novel types of hydrophobin, which we named hydrophobin 3, 4, and 5. The second and the third most highly obtained ESTs were phosphatidylserine decarboxylase and formate dehydrogenase, which were obtained eight and seven times, respectively. It should be noted that two important genes (argonaute and RNA-dependent RNA polymerase) involved in the RNAi pathway were found, suggesting a future application for gene knock-down by RNA interference. The 53 ESTs were identical with the sequences already reported in L. edodes. The 433 ESTs were found to show significant sequence similarity (E value <1 x 10(-5)) with the proteins reported (or predicted) in other species. In total, 387,952 bp were sequenced and registered in DDBJ/GenBank (accession number BJ998097-BJ999127).     

Effect of phenolic acids on manganese peroxidase-dependent peroxidation of linoleic acid and degradation of a non-phenolic lignin model compound

The influence of aromatic phenolic and non-phenolic acids on manganese peroxidase (MnP)-dependent peroxidation of linoleic acid, and oxidation of a non-phenolic lignin model compound (LMC) was studied. Phenolic compounds inhibited both the MnP-dependent lipid peroxidation (LPO) and non-phenolic LMC degradation in the system. The antioxidant activity of the aromatic compounds in the enzymatic system with MnP-dependent LPO depends on the presence of the phenolic hydroxyl groups attached to the aromatic ring structure, the methoxylation of the hydroxyl group in the ortho position in diphenolics, and number of carbon atoms in the side chain. Natural phenolic compounds inhibit the oxidation of non-phenolic lignin in the system based on MnP-mediated LPO, but do not prevent it. This result indicates that MnP-mediated LPO may play an important role in lignin degradation even in the presence of the phenolic antioxidant compounds, and supports the possibility of the involvement of LPO in the degradation of lignin in wood.     

Use of monoclonal antibodies to detect Mn(II)-peroxidase in birch wood degraded by Phanerochaete chrysosporium

Summary A monoclonal antibody (Mab) produced to purified Mn(II)-peroxidase was visualized on and within cell corners of birch wood degraded by Phanerochaete chrysosporium using colloidal gold immuno-transmission electron microscopy techniques. Labelling of the fungal cell membrane and cell wall was also observed. The same Mab was used to visualize the penetration of extracellular fungal metabolite extracts, infiltrated into previously decayed wood. Binding of antibodies to the lignin-rich cell corner region of the middle lamella in wood decayed by P. chrysosporium was observed in sectioned wood blocks and in wood infiltrated with crude extracellular extracts from P. chrysospirium liquid cultures. When a control monoclonal antiserum, produced to extracellular metabolites of Postia (Poria) placenta and cross-reactive with fungal cellulase, was used in labelling, the cellulose rich region of the wood cell walls were labelled. Labelling in the middle lamella cell corners was only noted in what has been described as nonor poorly lignified cell corner regions. Offprint requests to: G. Daniel     

The commercial exploitation of the white rot fungus Lentinula edodes (shiitake)

The Japanese wood mushroom, Lentinula edodes, can be cultivated under UK climatic conditions using extensive cultivation systems adapted from traditional growing methods developed in Japan and Taiwan. As well as producing a desirable and high value food product, cultivation offers a viable alternative enterprise for farmers. The growing methods described could provide incentives for the management of broad-leaved woodland in Britain with consequent conservation benefits. Four different strains of Lentinula edodes were grown on oak logs under natural environmental conditions below the woodland canopy and fruited in polyethylene tunnels. Yields ranged from 0.5–0.9 kg wet weight shiitake per cordwood log per year over a three year fruiting period.     

鲜切香菇贮藏过程中质构变化与自溶自噬分析

旨在明确鲜切香菇经过机械损伤后发生的应激生理以及自溶进程中细胞质构的变化。以香菇0912子实体新鲜切片为材料,研究低温和室温贮藏条件下香菇切片生理生化指标的变化趋势,利用显微技术研究老化组织中细胞结构的变化。结果显示低温贮藏条件有利于减缓鲜切香菇褐变、软化、蒸腾失重及抗氧化活性的下降。微观结构研究显示鲜切香菇经过机械损伤后激发了自溶自噬机制,细胞内出现胞壁断裂、胞膜消融、自噬体吞噬细胞器、大量DNA断裂、细胞核消失及细胞解体等现象。鲜切香菇切片在损伤后发生自溶自噬现象,微观组织结构的破坏,是菇体劣变的重要原因之一,在外界贮藏环境的共同作用下加速腐败的进程。     

Oxygen radical scavenging capacity of phenolic and non-phenolic compounds in red and white wines

The aim of the present study was the evaluation of the antioxidant content in phenolic and non-phenolic extracts of ten wine samples, trying to elucidate the potential role of unusual antioxidant compounds. Samples of wines processed from red and white grapes (Vitis vinifera L.), deprived of the volatile fraction at low temperature and buffered at physiological pH, were fractionated by C₁₈ into two fractions: FR1 and FR2. Non-phenolics, such as tartaric, malic, lactic, and succinic acids; glucose; fructose; and glycerin were mainly found in FR1, while polyphenols were present exclusively in FR2. Peroxyl radical quenching was assayed by the ORAC method, while superoxide and hydroxyl radical scavenging activity were assayed by electron paramagnetic resonance. In the ORAC and superoxide assays, most of the activity was found in FR2, while in hydroxyl radical assay, the activity was found in FR1. Model solutions were used to attribute a role to the single compounds in the evaluation of wine’s ROS scavenging capacity: the ORAC and superoxide anion scavenging effects were mainly attributed to the polyphenols, averaging 94.8%, with some contribution from glycerin, particularly in white wines. Unexpectedly, the main chemical responsible for hydroxyl radical scavenging activity was glycerin (56.1%), with the polyphenols scavenging at 18.1%.     

Lentinula edodes produces a multicomponent protein complex containing manganese (II)-dependent peroxidase, laccase and beta-glucosidase

Haemozoin, the malaria pigment, regulates the synthesis of several host cytokines and has been found to be associated with the disease severity. Here we describe that malarial patients produce a significant amount of anti-haemozoin IgM antibodies. Levels of these antibodies were higher among the complicated Plasmodium falciparum cases compared to the non-complicated P. falciparum group and Plasmodium vivax patients. The P. falciparum haemozoin also induced the synthesis of tumour necrosis factor-alpha (TNF-alpha) and interleukin-1beta (IL-1beta) by the monocytes of the healthy individuals, but the production of these cytokines by the monocytes was inhibited in the presence of the anti-haemozoin IgM antibodies. Therefore, it seems that the host produces these antibodies (mainly IgM types) during malarial infection that can influence the progression of the disease by inhibiting the production of cytokines.     

多功能过氧化物酶介导Mn(III)络合体系对酚类化合物的氧化降解

【背景】酚类化合物是环境中主要的水体污染物之一。多功能过氧化物酶(versatile peroxidase,VP)介导的Mn (III)-有机酸络合体系具有较高的氧化还原电势,在酚类有机污染物降解方面具有巨大潜力。【目的】探究VP介导的Mn (III)-有机酸络合体系降解酚类化合物的能力,为酚类化合物的降解提供新的思路和方法。【方法】研究选取了糙皮侧耳(Pleurotus eryngii)来源的多功能过氧化物酶(PeVP),采用包涵体复性的方法获得了PeVP活性蛋白,并对重组PeVP进行酶学性质研究及Mn (III)络合体系反应条件优化,进而探究Mn (III)络合体系对酚类污染物的氧化降解能力。【结果】确定了PeVP包涵体复性最佳条件为：pH 9.5、10%甘油、0.5 mol/L尿素、0.5 mmol/L氧化型谷胱甘肽(glutathione oxidized,GSSG)、0.1 mmol/L二硫苏糖醇(dithiothreitol,DTT)、0.1 mmol/L乙二胺四乙酸(ethylenediamine tetraacetic acid,EDTA)、5 mmol/L CaCl₂、5µmol/L羟高铁血红素(hematin),4℃静置透析24 h,最后5µmol/L hematin孵育12 h。通过对PeVP介导的Mn (III)-有机酸络合体系优化,确定了最优反应条件为：75 mmol/L苹果酸缓冲液(pH 4.5)、6 mmol/L Mn²⁺和0.2 mmol/L H₂O₂。在上述条件下,探究了络合体系对2,2-丁香醛连氮-双-3-乙基苯并噻唑啉-6-磺酸[2,2ʹ-azinobis-(3-ethylbenzthiazoline-6-sulphonate),ABTS]、2,6-二甲氧基苯酚(2,6-dimethoxyphenol,DMP)、愈创木酚和丁香醛连氮4种酚类模式底物的催化活性,发现在pH 4.5条件下,络合体系对酚类模式底物的氧化活性可达到PeVP直接氧化活性的1.5−7.5倍,并且在16 h的酶解过程中,苯酚、对苯二酚、间苯二酚和对硝基苯酚的平均降解速率分别为10.91、10.69、6.50和5.71 mg/(L·h),推测Mn (III)-有机酸络合物对酚类底物的氧化降解是通过夺取酚类底物的电子形成酚类自由基中间体,自由基中间体经过电子重排和C−C键的断裂,最终导致酚类物质的氧化降解。【结论】在弱酸(pH 4.5)条件下PeVP介导的Mn (III)-苹果酸络合体系对酚类污染物具备较强的氧化能力,这为酚类有机污染物提供了新的生物解决方案。     

利用SSR标记鉴定香菇单核体及杂交后代

【目的】研究简单重复序列(Simple sequence repeat,SSR)分子标记方法用于香菇原生质体单核体、孢子单核体及其杂交后代的分离和鉴定。【方法】利用基于香菇全基因组序列信息开发的SSR标记,分析由香菇品种"L808"双核菌丝制备的原生质体单核体、孢子单核体及其杂交后代的SSR指纹。【结果】对制备的原生质体单核体的鉴定中,在不经过杂交配对的情况下,鉴定出"L808"的两种不同极性的原生质体单核体,其分离比例为191:1,该鉴定结果得到SSR标记、随机扩增多态性DNA(Random amplified polymorphismic DNA,RAPD)标记及传统方法的验证。另外,开发的香菇SSR标记还能以多位点组合的方式,用于对孢子单核体及其杂交后代的鉴定。【结论】应用SSR标记可加快香菇单核体的制备进程,并提高鉴定单核体及相关杂交菌株的准确性,促进香菇遗传育种研究。     

Design, synthesis and reactivity with dichloro-bis(triphenylphosphine) platinum(II) of two triazenide compounds

In the presence of sodium nitrite, the reaction of methyl anthranilate and 2-aminopyridine or o-aminobenzoic acid gives two triazenes, 1-[(2-carboxymethyl)benzene]-3-[2-pyridine]triazene (HL) and 1-[(2-carboxymethyl)benzene]-3-[o-aminobenzoic acid]triazene (H₂L′), respectively. In the presence of Et₃N, the reaction of Pt(PPh₃)₂Cl₂ and HL or H₂L′ produces two triazenido platinum(II) complexes, Pt(PPh₃)₂(L)Cl (1) and Pt(PPh₃)₂(L′) (2), respectively, which have been characterized by X-ray crystallography, ³¹P NMR spectra, UV-Vis spectra, emission spectra and cyclic voltammetry. When excited at 310 nm, complexes 1 and 2 show luminescence at 432 and 442 nm, respectively, which is consistent with the trend of the lowest-energy absorption wavelengths of 1 (376 nm) and 2 (379 nm). Complexes 1 and 2 exhibit one or two redox waves and follow the order 1 (0.97 V) → 2 (0.89 and 0.07 V), which is also in accordance with the trend of the lowest-energy absorption spectra of 1 (376 nm) and 2 (379 nm).     

Induction of apoptosis in cultured cells by extracts from shiitake (Lentinula edodes) mycelial culture broth

Extracts fromshiitake (Lentinula edodes) mycelial culture broth, by an organic solvent ethyl acetate, inhibited the proliferation of cultured cells. At lower concentrations (1.25–15 μg/ml), this inhibition, measured by the MTT assay, was dose- and cell line-dependent. Inhibition of tumor cells, such as Caski, SiHa, HeLa, HP-1 and A375, byL. edodes-436 extracts was stronger than inhibition of normal cells (3T3). At 20 μg/ml, the extracts induced changes in cell shape, DNA-fragmentation and the activation of caspase-3. The extracts also inhibited the binding of E2F protein to its promoter. The results suggest that extracts ofL. edodes culture broth contain substances that have the ability to induce apoptosis in the cultured cells.     

4-Nitrocatechol as a probe of a Mn(II)-dependent extradiol-cleaving catechol dioxygenase (MndD): comparison with relevant Fe(II) and Mn(II) model complexes

Mn(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase (MndD) is an extradiol-cleaving catechol dioxygenase from Arthrobacter globiformis that has 82% sequence identity to and cleaves the same substrate (3,4-dihydroxyphenylacetic acid) as Fe(II)-dependent 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD) from Brevibacterium fuscum. We have observed that MndD binds the chromophoric 4-nitrocatechol (4-NCH(2)) substrate as a dianion and cleaves it extremely slowly, in contrast to the Fe(II)-dependent enzymes which bind 4-NCH(2) mostly as a monoanion and cleave 4-NCH(2) 4-5 orders of magnitude faster. These results suggest that the monoanionic binding state of 4-NC is essential for extradiol cleavage. In order to address the differences in 4-NCH(2) binding to these enzymes, we synthesized and characterized the first mononuclear monoanionic and dianionic Mn(II)-(4-NC) model complexes as well as their Fe(II)-(4-NC) analogs. The structures of [(6-Me(2)-bpmcn)Fe(II)(4-NCH)](+), [(6-Me(3)-TPA)Mn(II)(DBCH)](+), and [(6-Me(2)-bpmcn)Mn(II)(4-NCH)](+) reveal that the monoanionic catecholate is bound in an asymmetric fashion (Delta r(metal-O(catecholate))=0.25-0.35 A), as found in the crystal structures of the E(.)S complexes of extradiol-cleaving catechol dioxygenases. Acid-base titrations of [(L)M(II)(4-NCH)](+) complexes in aprotic solvents show that the p K(a) of the second catecholate proton of 4-NCH bound to the metal center is half a p K(a) unit higher for the Mn(II) complexes than for the Fe(II) complexes. These results are in line with the Lewis acidities of the two divalent metal ions but are the opposite of the trend observed for 4-NCH(2) binding to the Mn(II)- and Fe(II)-catechol dioxygenases. These results suggest that the MndD active site decreases the second p K(a) of the bound 4-NCH(2) relative to the HPCD active site.     

Reactivity of different oxidases with lignins and lignin model compounds

Oxidase activities toward lignins and lignin model compounds failed to produce low molecular weight products. Peroxidase and laccase react similarly, and can be distinguished when both enzymes are present on the basis of pH activity differences with syringaldazine as substrate.     

Determination of Mn(II) and Co(II) with Arsenazo III

Complex formation between Arsenazo III and Mn²⁺ and Co²⁺ at equilibrium has been investigated at pH 7.2, and the stoichiometry and stability of the complexes have been determined. The data indicate that Arsenazo III is suitable for determination of Mn²⁺ and Co²⁺ on the micromolar scale. The dissociation constants of the phosphate complexes of Mn²⁺ and Co²⁺ at pH 7.2 were estimated with Arsenazo III as 3.6 and 10 mM, respectively.     

Influence of precipitated calcium carbonate (CaCO3) on shiitake (Lentinula edodes) yield and mushroom size

Synthetic substrate consisting of oak sawdust (50%), white millet (28%), winter rye (11%) and soft red wheat bran (11%) was non-supplemented or supplemented with 0.2%, 0.4% or 0.6% (dry weight basis) precipitated calcium carbonate (CaCO(3)). Shiitake (Lentinula edodes) was grown in two crops to determine the effect of three CaCO(3) levels on mushroom yield and size. Yields and biological efficiencies (averages for two crops) from substrates non-supplemented with CaCO(3) were lower by 14.1%, 18.4% and 24.9% compared to treatments supplemented with 0.2%, 0.4% and 0.6% CaCO(3), respectively. Mushroom size (weight) was larger with non-supplemented substrate (16.8 g) compared to substrate supplemented with 0.6% CaCO(3) (15.1 g). However, mushroom production was more consistent from crop to crop when 0.6% CaCO(3) was added to substrate.     

Biodegradation of an Organoselenium Compound to Elemental Selenium by Lentinula edodes (Shiitake) Mushroom

The present paper reports for the first time the transformation of an organic selenium compound into red selenium (Se), which causes the intense red pigmentation of Lentinula edodes (shiitake mushroom) mycelia. The biotransformation of 1,5-diphenyl-3-selenopentanedione-1,5 (diacetophenonyl selenide, preparation DAPS-25) was studied in liquid- and solid-phase cultures of L. edodes. In liquid culture medium, a red color develops in the mycelium at initial DAPS-25 concentrations equal to or higher than 0.1?mmol/l. The intensity and initiation time of coloration is Se concentration-dependent. Semiquantitative data obtained by physicochemical methods on the extent of Se and acetophenone production suggest that L. edodes is able to absorb and/or destruct this organic Se xenobiotic.     

Peroxidase oxidation of lignin and its model compounds

The published information on the use of enzymes belonging to a large family of peroxidases of plant and fungal origin as the catalysts of lignin and its model compound oxidation by hydrogen peroxide are reviewed. The structures and the mechanism of the catalytic action of these enzymes are comparatively considered. The enzymes have similar structures; however, the enzymes of plant origin have higher stabilities and pH optima. It was concluded that further studies of the effect of the functional nature, polymolecular properties, and regularities of the redox conversions during the catalytic oxidation of plant lignins by plant peroxidases are promising.     

Reactions of blue and yellow fungal laccases with lignin model compounds

Laccases of white-rot fungi Panus tigrinus, Phlebia radiata, and Phlebia tremellosa were isolated from cultures grown in liquid media which did not contain lignin and from the cultures grown on wheat straw. The physical and chemical properties of the laccases grown in submerged cultures were typical for blue fungal laccases. The laccases of the same fungi isolated from the solid-state cultures differed from the blue forms by lack of an absorption maximum at 610 nm. The typical blue laccases of P. tigrinus, Ph. radiata, and Ph. tremellosa acquired an ability to oxidize veratryl alcohol and a non-phenolic dimeric lignin model compound of beta-1-type only in the presence of a redox mediator, 2, 2'-azinobis(3-ethylbenzthiazolinesulfonic acid). The P. tigrinus and Ph. radiata yellow laccases catalyzed the oxidation of the same substrates without any mediator. The rate of the reaction of the blue laccases with a phenolic dimeric lignin model compound of beta-O-4-type was higher than that of the yellow laccases. The yellow laccases are apparently formed by the reaction of the blue laccases with low-molecular-weight lignin decomposition products.     

Oxidation of phenolic arylglycerol beta-aryl ether lignin model compounds by manganese peroxidase from Phanerochaete chrysosporium: oxidative cleavage of an alpha-carbonyl model compound.

Manganese peroxidase (MnP) oxidized 1-(3,5-dimethoxy-4-hydroxyphenyl)-2-(4-(hydroxymethyl)-2-methoxyphenoxy) -1,3-dihydroxypropane (I) in the presence of MnII and H2O2 to yield 1-(3,5-dimethoxy-4-hydroxyphenyl)- 2-(4-(hydroxymethyl)-2-methoxyphenoxy)-1-oxo-3-hydroxypropane (II), 2,6-dimethoxy-1,4-benzoquinone (III), 2,6-dimethoxy-1,4-dihydroxybenzene (IV), 2-(4-(hydroxymethyl)-2-methoxyphenoxy)-3-hydroxypropanal (V), syringaldehyde (VI), vanillyl alcohol (VII), and vanillin (VIII). MnP oxidized II to yield 2,6-dimethoxy-1,4-benzoquinone (III), 2,6-dimethoxy-1,4-dihydroxybenzene (IV), vanillyl alcohol (VII), vanillin (VIII), syringic acid (IX), and 2-(4-(hydroxymethyl)-2-methoxyphenoxy)-3-hydroxypropanoic acid (X). A chemically prepared MnIII-malonate complex catalyzed the same reactions. Oxidation of I and II in H2(18)O under argon resulted in incorporation of one atom of 18O into the quinone III and into the hydroquinone IV. Incorporation of one atom of oxygen from H2(18)O into syringic acid (IX) and the phenoxypropanoic acid X was also observed in the oxidation of II. These results are explained by mechanisms involving the initial one-electron oxidation of I or II by enzyme-generated MnIII to produce a phenoxy radical. This intermediate is further oxidized by MnIII to a cyclohexadienyl cation. Loss of a proton, followed by rearrangement of the quinone methide intermediate, yields the C alpha-oxo dimer II as the major product from substrate I. Alternatively, cyclohexadienyl cations are attacked by water. Subsequent alkyl-phenyl cleavage yields the hydroquinone IV and the phenoxypropanal V from I, and IV and the phenoxypropanoic acid X from II, respectively. The initial phenoxy radical also can undergo C alpha-C beta bond cleavage, yielding syringaldehyde (VI) and a C6-C2-ether radical from I and syringic acid (IX) and the same C6-C2-ether radical from II. The C6-C2-ether radical is scavenged by O2 or further oxidized by MnIII, subsequently leading to release of vanillyl alcohol (VII). VII and IV are oxidized to vanillin (VIII) and the quinone III, respectively.     

Characterization of vitamin B12 compounds in the fruiting bodies of shiitake mushroom (Lentinula edodes) and bed logs after fruiting of the mushroom

This study determined the vitamin B₁₂ content in commercially available dried fruiting bodies of shiitake mushroom, Lentinula edodes. The vitamin B₁₂ contents in dried donko-type fruiting bodies with closed caps (5.61 ± 3.90 μg/100 g dry weight), did not significantly differ from those of dried koushin-type fruiting bodies with open caps (4.23 ± 2.42 μg/100 g dry weight). The bed logs after fruiting of the mushroom also contained the vitamin B₁₂ levels similar to that in the dried shiitake fruiting bodies. To determine whether the dried shiitake fruiting bodies and their bed logs contained vitamin B₁₂ or other corrinoid compounds that are inactive in humans, we purified corrinoid compounds using an immunoaffinity column and identified vitamin B₁₂ using vitamin B₁₂-dependent Escherichia coli 215 bioautograms and liquid chromatography-electrospray ionization tandem mass spectrometry (LC/ESI-MS/MS) chromatograms. Dried shiitake fruiting bodies rarely contained an unnatural corrinoid vitamin B₁₂[c-lactone] that is inactive in humans. Given that shiitake mushroom lacks the ability to synthesize vitamin B₁₂ de novo, the vitamin B₁₂ found in dried shiitake fruiting bodies must have been derived from the bed logs.