Roscoffia minor sp. nov. (Peridiniales, Dinophyceae): A new, sand-dwelling, armored dinoflagellate from Hokkaido, Japan

A new, sand-dwelling, armored dinoflagellate, Roscoffia minor sp. nov., is described from Ishikari beach, Hokkaido, Japan. The dinoflagellate has been collected from sand samples taken both near the water's edge and further upshore (25 m from the water's edge at a depth of 1 m), indicating that it is a true sand-dwelling species. Roscoffia minor is heterotrophic and lacks both a chloroplast and an eye-spot. The cell consists of a flattened cap-shaped epitheca and a large hemispheroidal hypotheca, and it is quite different from cells of the typical armored dinoflagellates. The thecal plate formula is: Po, 3′, la, 5″, 3c, 3s, 5″, 1″″. Its distinct cell shape and the thecal plate arrangement indicate affinity to the monotypic genus Roscoffia. Roscoffia minor is distinguished from Roscoffia capitata, the type species, by its smaller size and the possession of a finger-like apical projection. The thecal arrangement of the epitheca is similar to those of the members of the family Podolampaceae, while the hypothecal arrangement is the same as that of members of the subfamily Diplopsalioideae (family Congruentidiaceae). The organism seems to be positioned somewhere intermediate between these two families, but the family to which this dinoflagellate should be affiliated could not be determined.     

Amphidiniopsis uroensis sp. nov. and Amphidiniopsis pectinaria sp. nov. (Dinophyceae): Two new benthic dinoflage llates from Japan

Two new armoured, heterotrophic sand‐dwelling marine dinoflagellates, Amphidiniopsis uroensis Toriumi, Yoshimatsu et Dodge sp. nov. and Amphidiniopsis pectinaria Toriumi, Yoshimatsu et Dodge sp. nov. were collected from Japanese sandy beaches, and their morphological features observed by light microscopy and scanning electron microscopy (SEM). The cell size of A. uroensis is 28–31 μm in length and 23–28 μm in width. The plate formula is Po 3′, 3a, 6″, 3c, 4s (+1 acc.), 5″′, 2″″. The thecal surface is ornamented with small processes, pores and spines, however, the surface of plate 2a is smooth. The epitheca possesses a narrow ridge that is extended along on the suture between 1′ and 3′. Plate 1″ connects with the right sulcal (Sd) and right sulcal accessory (Sda) plates, so the cingulum is incomplete. A nucleus is situated in the central part of the cell. There are a few small spines at the antapex. There are no stigma or chloroplasts. Amphidiniopsis pectinaria cells are 33–40 urn in length and 29–35 μm in width. The plate formula is Po 4′, 3a, 7″, 3c, 4s (+1 acc.), 5″′, 2″″. Plate 1″ connects directly with Sd and Sda plates, so the cingulum is incomplete. The thecal surface is ornamented with small processes, spines and pores. The epitheca is provided with a narrow ridge that is extended along on the suture between plates 1′, 4′ and 7″. The ornamentation on the antapical plates is unique. It is arranged in 10 straight rows on the hypotheca; each row has a strong spine at its posterior end. In addition, there is a long spine at the antapex. There are no stigma or chloroplasts. A nucleus is located in the central part of the cell.     

Morphology of Sinophysis minima sp. nov. and three Sinophysis species (Dinophyceae, Dinophysiales) from the Sea of Japan

Four sand‐dwelling species of the marine dinoflagellate genus Sinophysis, including one new species, have been examined from intertidal and subtidal sand, from the Sea of Japan. The morphological features of these species were observed by light and scanning electron microscopy. Sinophysis minima sp. nov. is flattened laterally and is 17.5–35.0 μm in length and 15.0–27.5 μm in depth, with a length/depth ratio of 1.1–1.4, an epitheca depth of 5.0–7.5 μm, and a sulcus length of about three‐quarters the hypotheca length. Sinophysis ebriola (Herdman) Balech, Sinophysis grandis Hoppenrath and Sinophysis stenosoma Hoppenrath were recorded for the first time in the seas of Russia. Sinophysis stenosoma is the most common species in the Sea of Japan. All species usually occurred together in the region investigated. Additional information on the known species is provided.     

Heterocapsa psammophila sp. nov. (Peridiniales, Dinophyceae), a new sand-dwelling marine dinoflagellate

A new armored dinoflagellate species, Heterocapsa psammophila Tamura, Iwataki et Horiguchi sp. nov. is described from Kenmin‐no‐hama beach, Hiroshima, Japan using light and electron microscopy. This dinoflagellate possesses the typical thecal plate arrangement of the genus Heterocapsa, Po, cp, 5′, 3a, 7′′, 6c, 5s, 5′′′, 2′′′′; and the 3‐D body scales of Heterocapsa on the plasma membrane. The cell shape is ovoidal. The spherical nucleus and the pyrenoid are situated in the hypotheca and the epitheca, respectively. The ultrastructure of H. psammophila is typical of dinoflagellates and the pyrenoid is invaginated by cytoplasmic tubules. H. psammophila is distinguished from all other hitherto‐described Heterocapsa species by the cell shape, the relative position of the nucleus and pyrenoid and the structure of the body scale. The habitat and behavior of this new species in culture suggest that the organism is truly a sand‐dwelling species.     

Amphidiniella sedentaria gen. et sp. nov. (Dinophyceae), a new sand-dwelling dinoflagellate from Japan

A new sand-dwelling dinoflagellate is described from Sesoko Beach, Okinawa Island, subtropical Japan and its micromorphology is studied by means of light and electron microscopy. The cell consists of a small epitheca and a large hypothecs superficially resembling members of the unarmored genus Amphidinium. The cell is dorso-ventrally flattened and possesses a single chloroplast with a large conspicuous pyrenoid. Transmission electron microscopy revealed that the dinoflagellate possesses typical dinoflagellate cellular organization. Scanning electron microscopy demonstrated that the organism is thecate and the thecal plate arrangement is Po, 4′, 1a, 7″, 5c, 4s, 6″′, 2″″. Most of the characteristics suggest gonyaulacalean affinity of the new species. These are the presence of ventral pore, lack of canal plate, direct contact between the sulcal anterior plate and the flagellar pore, possession of six postcingular plates and asymmetrical arrangement of the antapical plates. Affinity to existing families of the order Gonyaulacales has not been determined. Based on the unique cell shape, thecal plate arrangement and the presence of ventral pore, a new genus, Amphidiniella, is established for this organism and the species is named A. sedentaria Horiguchi gen. et sp. nov.     

Light and scanning microscopy of two benthic species of Amphidiniopsis (Dinophyceae), Amphidiniopsis hexagona sp. nov. and Amphidiniopsis swedmarkii from Japan

Two species of the genus Amphidiniopsis, a marine armoured, sand‐dwelling dinoflagellate, Amphidiniopsis hexagona Yoshimatsu, Toriumi et Dodge sp. nov. and Amphidiniopsis swedmarkii (Balech) Dodge were collected from Japanese sandy beaches, and their morphologic features were observed by light microscopy and scanning electron microscopy. Amphidiniopsis hexagona was hexagonal in ventral view and measured 44–59 urn in length and 40–53 urn in width. The plate formula is P_o, 4′, 2a, 7″, 3c, 4s (+ 2 accessory), 5″″, 2″″. This plate arrangement of A. hexagona is essentially the same as those of Amphidiniopsis hirusta and A. swedmarkii, but this new species can be readily distinguished from the latter two species by the following characters: (i) the cell shape; (ii) the presence of an antapical spine; and (iii) the surface ornamentation of thecal plates.     

Pyramidodinium atrofuscum gen. et sp. nov. (Dinophyceae), a new marine sand-dwelling coccoid dinoflagellate from tropical waters

A new marine sand‐dwelling coccoid dinoflagellate Pyramidodinium atrofuscum Horiguchi et Sukigara gen. et sp. nov. is described from Jellyfish Lake, Republic of Palau. The dinoflagellate alternates a non‐motile vegetative stage with a motile gymnodinioid stage within its life cycle. The non‐motile stage is dominant in the life cycle and the dinoflagellate reproduces itself by means of the production of two motile cells. The released motile cell swims only for a short period and is directly transformed into the non‐motile cell. The non‐motile cell is sessile, pyramidal in shape, with a single longitudinal ridge and a double transverse ridge. The surface of the cell wall is covered with many processes. The motile cell has a Gymnodinium‐like morphology, but no apical groove is present. An ultrastructural study revealed that the dinoflagellate possesses typical dinoflagellate organelles. Based on the unique morphology of the vegetative non‐motile stage, we propose a new genus Pyramidodinium for this dinoflagellate, with the type species Pyramidodinium atrofuscum Horiguchi et Sukigara, gen. et sp. nov.     

Haramonas viridissp. nov. (Raphidophyceae, Heterokontophyta), a new sand-dwelling raphidophyte from cold temperate waters

A new, marine, sand‐dwelling raphidophyte from Sylt, Germany, Haramonas viridis Horiguchi et Hoppenrath sp. nov. is described. This represents a second species in the previously monotypic genus Haramonas, which was originally described from a sand sample from a mangrove river mouth in tropical Australia, based on the type species, H. dimorpha. This new species from a cold temperate region: (i) possesses a tubular invagi‐nation in the posterior part of the cell; (ii) produces copious amounts of mucilage in culture; (iii) possesses both motile and non‐motile stages in its life cycle; and (iv) has overlapping discoidal chloroplasts, all of which are diagnostic features of the genus Haramonas. Therefore, it is indisputable that this species belongs to this genus. However, the species from Sylt differs from the type species of the genus in: (i) having a larger cell size; (ii) possessing a larger number of chloroplasts; and (iii) being greenish in color. The ultrastructural study revealed that the structure of the tubular invagi‐nation was the same as that of the type species.     

A new marine diatom, Cocconeis shikinensis sp. nov. (Bacillariophyceae) from Japan

A new species of Cocconeis has been found growing on the green seaweed Caulerpa racemosa (Forsskål) J. Agardh var. laete‐virens (Montagne) Weber van Bosse from Shikine Island in the Izu Islands on the Pacific coast of Japan; we propose the name Cocconeis shiki‐nensis Hid. Suzuki and describe the species by light microscopy (LM) and electron microscopy (EM). This taxon was also collected from the plastic plates used for rearing in seed production systems of the abalone Nordotis discus hannai Ino and the horned turban Turbo cornutus Solander in the Toyama Prefectural Fisheries Research Institute facing the Sea of Japan. The main morphological features of C. shikinensis are as follows. The valves are elliptic. The valve face of the raphid valve (RV) is slightly concave and that of the araphid valve (AV) is complementary to the RV and convex. The single plastid is flat, C‐shaped and elaborately lobed. The raphe on the RV is straight. The each terminal area expands to both sides along the valve margin, forming an arrowhead‐shaped, thickened hyaline area. The striae consist of small, round areolae and are radiate and uniseriate. On the AV, the striae consist of several alveoli. Each alveolus opens internally by means of a circular foramen. The valvocopula of each valve is fimbriate and open. The cingulum attached to the AV consists of three girdle bands; a valvocopula and two bands (copula and pleura), which are open and have ligulae. The relationship between C. shikinensis and similar members of the genus Cocconeis is discussed.     

Morphology and spatial distribution of Cabra species (Dinophyceae,Peridiniales) from Peter the Great Bay (northwestern Sea of Japan), including the description of C. levis sp. nov.

Two species of the marine sand-dwelling dinoflagellate genus Cabra were found in epiphytic assemblages on macrophytes from Peter the Great Bay of the Sea of Japan: the type species of the genus Cabra matta and a new species Cabra levis sp. nov. The new species possesses all characteristics of the genus, e.g. the same plate formula (APC 3′ 1a 5′′ 3c 6s 5′′′ 1′′′′), and is 29.0–42.0 µm long and 24.6–37.8 µm deep. It differs from other Cabra species by its more rounded shape, in lacking a spine on the dorsal side of the cell and a pointed flange on plate 1′′′, in having nearly smooth thecal plates as well as by the position of the epithecal plates. Some details of the sulcal construction of Cabra species are described for the first time. Cabra levis and C. matta were found on macrophytes throughout the year. As both species occurred more often on macrophytes than in near-shore sand, they are epiphytic rather than sand-dwelling.     

Morphology and taxonomy of Stephanodiscus suzukii sp. nov. and Stephanodiscus pseudosuzukii sp. nov. (Bacillariophyceae) from Lake Biwa, Japan, and S. carconensis from North America

Two new, recent diatoms, Stephanodiscus suzukii Tuji et Kociolek and Stephanodiscus pseudosuzukii Tuji et Kociolek are described from Lake Biwa, Japan, where they had been identified previously as Stephanodiscus carconensis Grunow var. carconensis and S. carconensis var. pusillus Grunow, respectively. These forms are compared in terms of valve ultrastructure with populations of S. carconensis from North America. The Japanese species differ from the North American specimens in characteristics related to the central fultoportula and rimoportula.     

Polysiphonia freshwateri sp. nov. and Polysiphonia koreana sp. nov.: two new species of Polysiphonia (Rhodomelaceae,Rhodophyta) from Korea

Polysiphonia sensu lato comprises approximately 200 species, which are currently assigned to several different genera. To date, one of these genera, namely, Polysiphonia, has been reported to have 17 species. Here, we describe for the first time P. freshwateri sp. nov. and P. koreana sp. nov. from Uljin and Ulleung Island, Korea, based on morphological and molecular evidence. Polysiphonia freshwateri sp. nov. and P. koreana sp. nov. are characterized by having the typical Polysiphonia features. Polysiphonia freshwateri sp. nov. is further characterized by having abundant trichoblasts, conspicuous scar cells, and tetrasporangia arranged in spiral series. Polysiphonia koreana sp. nov. is further characterized by having very scarce scar cells placed between two pericentral cells, from which cicatrigenous branches arise. The results of our rbcL sequence analyses support the taxonomic placement of P. freshwateri sp. nov. and P. koreana sp. nov. within Polysiphonia.     

Torulaspora maleeae sp. nov., a novel ascomycetous yeast species from Japan and Thailand

Nine strains of a new Torulaspora species were isolated from natural samples collected in Japan and Thailand including one strain obtained from a leaf of Rhizophora stylosa (NBRC 11061T), one strain from soil (NBRC 11062), six strains from mosses (ST-14, ST-266, ST-510, ST-511, ST-513 and ST-581) and one strain from sediment in mangrove forest (RV-51). On the basis of morphological, biochemical, physiological and chemotaxonomic characteristics, and the sequence analyses of the D1/D2 domain of the large subunit (LSU) rRNA gene and the internal transcribed spacer (ITS) (ITS1-5.8S rRNA gene-ITS2) region, the nine strains were found to represent a single novel species of the genus Torulaspora, which were named Torulaspora maleeae sp. nov. The type strain is NBRC 11061T (BCC 25515T=CBS 10694T). In the phylogenetic trees based on the sequences of the D1/D2 domain of the LSU rRNA gene, T. maleeae showed a close relationship with the five recognized species of the genus Torulaspora, Torulaspora delbrueckii, Torulaspora franciscae, Torulaspora globosa, Torulaspora microellipsoides and Torulaspora pretoriensis. Torulaspora maleeae differed from the five recognized species of the genus Torulaspora by six to 12 nucleotide substitutions (1.1-2.1%) in the D1/D2 domain of the LSU rRNA gene and by 6.4-11.7% nucleotide substitutions in the ITS (ITS1-5.8S rRNA gene-ITS2) region.     

Herminiimonas aquatilis sp. nov., a new species from drinking water

A bacterial strain (CCUG 36956T) isolated from drinking water was taxonomically studied in detail. Phylogenetic analyses using the 16S rRNA gene sequence of the isolate indicated that it belongs to family Oxalobacteraceae of the beta-subclass of the Proteobacteria, with the highest sequence similarity of 99.3% to the type strain of Herminiimonas fonticola. In the polyamine pattern putrescine and 2-hydroxyputrescine were the predominant compounds. In the polar lipid profile major compounds were phosphatidyl ethanolamine and diphosphatidyl glycerol. Phosphatidyl glycerol and an unknown phospholipid were detected in moderate proportions. The major respiratory quinone was a ubiquinone Q-8 and the major whole cell fatty acids were 16:1 omega7c, 17:1 omega6c, and 16:0. The strain also contained 10:0 3-OH and other fatty acids typical for members of the genus Herminiimonas. The results of DNA-DNA hybridizations and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain CCUG 36956T from H. fonticola. For this reason, we propose that strain CCUG 36956T represents a new species of the genus Herminiimonas for which we propose the name Herminiimonas aquatilis sp. nov.     

Leucobacter chromiireducens sp. nov, and Leucobacter aridicollis sp. nov., two new species isolated from a chromium contaminated environment

Two strains designated strains L-1^T and L-9^T were isolated from activated sludge of a treatment plant that receives wastewater from the tannery industry contaminated with chromium. Phylogenetic analysis showed that the organisms represented two new species of the genus Leucobacter. Strains L-1^T and L-9^T could be distinguished from the type strain of L. komagatae and from the type strain of “L. albus” by the B-type peptidoglycan composition, fatty acid composition, several phenotypic and physiological characteristics. The major fatty acids of the organisms were iso- and anteiso-branched C15:0 and C17:0, straight-chain C16:0 was also found in relatively high proportions. The organisms were halotolerant, grew in medium containing 9% NaCl, and all strains, including the type strain of L. komagatae grew in medium containing 5 mM Cr(VI). On the basis of the distinct peptidoglycan composition, 16S ribosomal DNA sequence analysis, percentage of DNA-DNA reassociation values, and phenotypic characteristics we are of the opinion that strain L-1^T represents a new species of the genus Leucobacter for which we propose the name Leucobacter chromiireducens and that strain L-9^T represents an additional new species of the same genus for which we propose the name Leucobacter aridicollis.     

Heterocapsa circularisquama sp. nov. (Peridiniales, Dinophyceae): A new marine dinoflagellate causing mass mortality of bivalves in Japan

Heterocapsa circularisquama Horiguchi sp. nov. is described from Ago Bay, central Japan. The dinoflagellate produced large-scale red tides in the bays of central and western Japan and caused mass mortality of bivalves, notably the pearl oysters. The cell is small and is composed of a conical epitheca and a hemi-spheroidal hypothecs. The chloroplast is single and is connected to the single pyrenoid. The nucleus is elongated and is located in the left side of the cell. Thecal plate arrangement has been determined as: Po, cp, 5′, 3a, 7″, 6c, 5s, 5″′, 2″″. Heterocapsa circularisquama is morphologically very similar to Heterocapsa illdefina and it is almost impossible to distinguish these two species at light microscopical level. The characteristics which can be used to distinguish these two species are the morphology of body scales and the ultrastructure of the pyrenoid matrix. The body scales of H. circularisquama possess six radiating ridges on the circular basal plate; no such ridges can be observed on the roughly triangular basal plate of the scales of H. illdefina. Furthermore, the scales of the latter species possess substantially shorter spines compared to those of H. circularisquama. The pyrenoid matrix of H. circularisquama is hardly perforated by cytoplasmic tubules, while in H. tlldefina the pyrenoid matrix is always penetrated by many cytoplasmic tubules. Based on the arrangement of thecal plates, morphology of body scales, and ultra-structure of the pyrenoid, I am placing H. circularisquama sp nov. into the genus Heterocapsa.     

The genus Phyllomyza Fallén (Diptera: Milichiidae) from Japan, with descriptions of four new species

The Japanese species of the genus Phyllomyza Fallén are revised. Four new species, Phyllomyza kanmiyai sp. nov., P. amamiensis sp. nov., P. proceripalpis sp. nov. and P. japonica sp. nov., are described and illustrated. P. securicornis Fallén is recorded from Japan for the first time. A key to the Japanese species of Phyllomyza is presented.     

Erythroglossum latum sp. nov. (Delesseriaceae, Rhodophyta) from the east coast of Honshu, Japan

A new species, Erythroglossum latum, is described based on specimens from Fukushima Prefecture along the east coast of Honshu, Japan. This species differs from Erythroglossum pinnatum Okamura in having a broader main blade, a clear midrib and lateral branches that are smaller in size and not clearly constricted at the base.