RNA synthesis required for DNA replication in Vicia seed embryos

The synthesis of DNA and RNA during germination of Vicia seedswas examined. Incorporation of ³H-thymidine into DNA reacheda maximum at about 32 hr after the beginning of imbibition,and RNA synthesis was shown to precede DNA replication. Sedimentationanalyses of ³H-uridine-labeled RNAs indicated that the embryossynthesize all types of rRNA, heterodisperse RNA and 4–5SRNA before and also during the phase of DNA replication. Actinomycin-treatments at lower concentrations (50 or 100 µg/ml)resulted in the specific inhibition of rRNA synthesis. Suchinhibition did not lead to a large reduction in ³H-thymidineincorporation during the replication phase. However, DNA synthesiswas drastically inhibited by a higher level (200 µg/ml)of actinomycin D. The results strongly suggest the involvementof synthesis of heterodisperse RNA in DNA replication. (Received May 28, 1976; )     

Nuclear RNP-particles bearing rapidly-labeled heterogeneous RNA from pea embryos

Ribonucleoprotein (RNP)-particles were extracted from the nuclei-enrichedfraction of pea embryos which were pulse-labeled with ³H-uridineor ₃H-adenosine. These nuclear RNP-particles sedimented heterodispersedlythrough a KCl-Mg-containing sucrose gradient with rather discretepeaks of 67–71, 53–55, 41–44, 33–35and 20–22S. These complexes were obtained even when thesynthesis of ribosomal RNA was inhibited by actinomycin D. Thelabeled RNA from the nuclear extracts, which contained theseRNP-particles, was shown to be heterodisperse RNA. (Received June 7, 1976; )     

Poly(A+)mRNA sequences in free mRNP and polysomes of mouse ascites cells

The poly(A⁺)RNA of the free mRNP of mouse Taper ascites cell contains a very reduced number of different mRNA sequences compared to the polysome poly(A⁺)RNA. By the technique of mRNA:cDNA hybridization we have determined that the free mRNP contains approximately 400 different mRNA sequences while the polysomes contain about 9000 different mRNAs. The free mRNP poly(A⁺)RNA sequences are present in two abundance classes, the abundant free mRNP class containing 15 different mRNA sequences and the less abundant free mRNP class containing 400 different mRNAs. The polysome poly(A⁺)RNA consists of three abundance classes of 25, 500 and 8500 different mRNA sequences.Despite its intracellular location in RNP structures not directly involved in protein synthesis the poly(A⁺)RNA purified from the free RNP of these cells was a very effective template for protein synthesis in cell-free systems. Cell-free translation products of free mRNP and polysome poly(A⁺)RNAs were analyzed by two-dimensional gel electrophoresis. This analysis confirmed the hybridization result that the free mRNP poly(A⁺)RNA contained fewer sequences than polysomal poly(A⁺)RNA. The abundant free RNP-mRNA directed protein products were a subset of the polysome mRNA-directed protein products. The numbers of more abundant products of cell-free protein synthesis directed by the free RNP-mRNA and polysomal mRNA were in general agreement with the hybridization estimates of the number of sequences in the abundant classes of these two mRNA populations.     

Characterization of poly(A+)RNA in free messenger ribonucleoprotein and polysomes of mouse Taper ascites cells

Cytoplasmic extracts of mouse Taper ascites cells were centrifuged on sucrose gradients to give 0–80 S, monosome, and polysome fractions. CsCl equilibrium density centrifugation of formaldehyde-fixed material from the 0–80 S fraction demonstrated that the messenger RNA in the 0–80 S fraction was in the form of free ribonucleoprotein. The size of the poly(A⁺)RNA and the size of the poly(A) segments of these molecules were shown to be very similar in both the free mRNP² and polysome fractions. The labeling kinetics of the free mRNP poly(A⁺)RNA was similar to that of the polysomal poly(A⁺)RNA.The free mRNP poly(A⁺)RNA efficiently stimulated protein synthesis in the wheat germ cell-free system, supporting the view that it was mRNA. Two-dimensional gel electrophoresis was used to analyze the proteins whose synthesis was directed by free mRNP and polysomal poly(A⁺)RNA. The free mRNP poly(A⁺)RNA directed the synthesis of a simpler set of abundant protein products than did the polysomal poly(A⁺)RNA. Most of the free mRNP abundant protein products were also present in the polysomal products, though obvious quantitative differences were evident, indicating that each individual mRNA had its own characteristic distribution between polysomes and the translationally inactive RNP form.     

Direct evidence for the lack of methylation of two pulse labeled plant RNAs

A product of the processing of precursor rRNA ("excess" RNA)has been indirectly found to be unmethylated in mammalian systems,but direct measurement was precluded because of its instability.The "excess" RNA of duckweeds is relatively stable allowingdirect estimation of its methylation by polyacrylamide gel electrophoresis.The "excess" RNA with an apparent molecular weight 0.5?10⁶ wasunmethylated. A pulse labeled RNA with an apparent molecularweight of 1.2?10⁶ (presumably from chloroplasts) was also unmethylated.Under similar conditions the presumed cytoplasmic rRNA precursors,and the mature cytoplasmic and chloroplast rRNAs were methylated. ¹Present address: Department of Biological Sciences, S.U.N.Y.Binghamton, N.Y. 13901, U.S.A. (Received May 9, 1974; )     

Formation of active 40 S ribosomal subunits in liver in the presence of aflatoxin B1

In the presence of aflatoxin B₁, 18 S RNA continues to be excised from a normal 45 S RNA, emerging into the cytoplasm in free newly synthesized 40 S subunits. The present results demonstrate that the particles so formed are indistinguishable from their control counterparts in composition and buoyant density as well as in their ability to be incorporated into polysomes. These findings suggest that 40 S subunits synthesized in the presence of aflatoxin B₁ represent active particles capable of initiating protein synthesis in rat liver cell.     

Relationship between translation-control and reduced polyadenylation of mRNA in elongated roots of pea seedlings

A large portion of newly formed mRNA transported into the cytoplasmwas found as free mRNPs with discrete S-values of 50-55S, 35-38Sand 22-26S in roots of elongated pea seedlings, in contrastto the younger embryo axis, in which most of the newly formedmRNA was associated with the polysomes. Nitta's finding withVicia seedlings, that free mRNPs contain lesser amounts of oligo(dT)-boundpoly(A)-segments (9), was confirmed by analyzing RNAs from thepolysomes and free mRNPs from elongated pea seedling roots thathad been labeled with ³H-adenosine under the selective inhibitionof rRNA synthesis by 5-FU. A clear difference was observed betweenthe young embryo axis and the elongated seedling root in thedistribution of ³H-adenosine-labeled mRNA in the microsomal(P-30) and postmicrosomal (S-30) fractions. The relative ratioof radioactivity associated with the microsomes was lower inseedling roots. The decrease during germination of the percentof the labeled whole cell RNA binding to the Millipore filter,reported in a previous paper, was proved to be the consequenceof reduced polyadenylation of poly(A)-segments after ³H-adenosine-labeledRNA had been treated with RNase A and RNase T₁ and analyzedon polyacrylamide gels. The evidence showed a close correlationbetween the accumulation of free mRNPs and reduced growth ofpoly (A)-segments in the mRNA of seedling roots. The relationshipbetween the ability of mRNPs to associate with the endoplasmicreticulum and the degree of polyadenylation of mRNA is discussed. (Received January 16, 1979; )     

The synthesis and properties of polysomal RNA in potato tuber slices during the early stage of aging

The synthesis, molecular size, and coding properties of polysome-associatedpolyadenylated RNA[poly(A)(+)RNA]and non-polyadenylated RNA[poly(A)(–)RNA] were investigated in potato tuber discsduring the early stage of aging. Tissue discs were labeled for6 hr with ³H-uridine in the presence of 5-fluorouracil to suppressrRNA synthesis, and polysomal RNA was isolated from the discs.Poly(A)(+)RNA accounted for 70% of the radioactivity in polysomalRNA and had a molecular size ranging from 6S to 30S with a peakat about 15S, when measured by formamide-polyacrylamide gelelectrophoresis. The rest of the radioactivity was in poly(A)(–)RNAwhich had nearly the same range in molecular size, but had noconspicuous peaks on the gel. The polysomal RNA could programthe synthesis of a wide variety of polypeptides in a cell-freetranslation system of wheat germ. Seventy percent of the translationalcapacity of polysomal RNA was attributed to poly(A)(+)RNA. Theelectrophoretic behaviour of the majority of the products frompoly(A)(+)RNA was similar to that of products from poly(A)(–)RNA,but the former could program the synthesis of five polypeptidesin addition to those translated from the latter. There was atendency for poly(A)(–)RNA to be a more efficient messengerfor large polypeptides. ¹Present address: Department of Agricultural Chemistry, Facultyof Horticulture, Chiba University, Matsudo 271, Japan. (Received November 16, 1979; )     

A study on senescence in tobacco leaf disks II. Chloroplast and cytoplasmic rRNAs

In tobacco leaf disks floated on water in the dark, chloroplastrRNA (23S and 16S rRNA) decreased rapidly, and this decreasewas inhibited by 10^–6M BA. The cytoplasmic rRNA (25S and18S rRNA) level changed little during a few days of dark incubationregardless of the presence or absence of BA. Cycloheximide at10^–5 M completely removed the effect of BA. ChloroplastrRNA and cytoplasmic rRNA respectively decreased and increasedduring a 4-day culture in the light, and BA had no influenceon these light effects. (Received December 2, 1974; )     

The Ionic Relations of Acetabularia mediterranea

The concentrations of K⁺, Na⁺, and Cl^– in the cytoplasmand the vacuole of Acetabularia mediterranea have been measured,as have the vacuolar concentrations of SO₄^–– andoxalate. The electrical potential difference between externalsolution, and vacuole and cytoplasm has been measured. The resultsindicate that Cl^– and SO₄^–– are probably transportedactively into the cell, and that active transport of Na⁺ isoutwards. The results for K⁺ are equivocal. The fluxes of K⁺,Na⁺, Cl^–, and S0₄^–– into the cell and theeffluxes of Na⁺ and Cl^– have been determined. The Cl^–fluxes are extremely large. In all cases the plasmalemma isthe rate-limiting membrane for ion movement. A technique isdescribed for the preparation of large, completely viable cellfragments containing only cytoplasm, with no vacuole.     

Characterization of 20-S and 40-S non-polysomal cytoplasmic messenger ribonucleoprotein particles from rat liver

Two populations of free messenger ribonucleoprotein (mRNP) particles, sedimenting at 20 S and 40 S respectively, were isolated from a rat liver postpolysomal supernatant. After treatment with 0.5 M KCl and recentrifugation through a sucrose layer, the mRNP particles were characterized with respect to their low-molecular-weight RNA and protein components. 40-S and 20-S particles show very different RNA patterns. Four distinct low-molecular-weight RNA species of approximately 105, 139, 187 and 256 nucleotides were found as components of the 40-S mRNPs. The 20-S mRNP particles contain one major low-Mr RNA species of approximately 243 nucleotides and a characteristic pattern of low-Mr RNAs similar to the one found in nuclear ribonucleoprotein particles. In contrast to the low-Mr RNAs found in nuclear RNP particles most of the low-Mr RNA species present in 20-S and 40-S mRNP particles are rapidly labeled after [3H]orotate administration. Whereas the low-Mr RNA composition of 20-S and 40-S mRNP particles is very different, the protein patterns of both mRNP complexes are very similar. Six major polypeptides with the following molecular weights of 117000, 79800, 76700, 53800, 43900, 36300 and several minor ones were found in both 20-S and 40-S mRNPs. In a cell-free system from wheat germs neither 20-S nor 40-S mRNP particles stimulated the incorporation of [3H]leucine into proteins. However, phenol-extracted RNA from 20-S and 40-S mRNPs stimulated total protein synthesis 16-fold and 3-fold, respectively. Furthermore, the RNA from both mRNP pools directed the synthesis of albumin in vitro.     

Selection for intragenic suppressors of lethal 23S rRNA mutations in Escherichia coli identifies residues important for ribosome assembly and function

Mutations in several functionally important regions of the 23S rRNA of E. coli increase the levels of frameshifting and readthrough of stop codons. These mutations include U2555A, U2555G, ΔA1916 and U2493C. The mutant rRNAs are lethal when expressed at high levels from a plasmid, in strains also expressing wild type rRNA from chromosomal rrn operons. The lethal phenotype can be suppressed by a range of second-site mutations in 23S rRNA. However, analysis of the functionality of the double mutant rRNAs in heterogeneous ribosome populations shows that in general, the second site mutations do not restore function. Instead, they prevent the assembly, or entry of the mutant 50S subunits into the functioning 70S ribosome and polysome pools, by affecting the competitiveness of the mutant subunits for association with 30S particles. The second-site mutations lie in regions of the 23S rRNA involved in subunit assembly, intersubunit bridge formation and interactions of the ribosome with tRNAs and factors. These second site suppressor mutations thus define functionally important rRNA nucleotides and this approach may be of general use in the functional mapping of large RNAs.     

Polysomal and cytoplasmic mRNP particles containing 7S(L) RNA

Nuclear RNP complexes, cytoplasmic mRNP particles and free and membrane-bound polysomes were prepared from rat liver and their low-molecular-mass RNA components were analyzed on polyacrylamide/formamide gels. The separated small RNAs transferred to diazophenylthioether paper were hybridized to the nick-translated recombinant plasmid pA6 containing cDNA sequences for the low-Mr RNA called 7S(L) RNA. Nuclear RNP particles and free and membrane-bound polysomes were found to contain 7S(L) RNA. In the cytoplasm 7S(L) RNA could be identified as the major small RNA in 20-S cmRNP particles.     

Proteins of the chloroplast and cytoplasmic ribosomes of Euglena

The proteins of chloroplast and cytoplasmic ribosomes, isolatedfrom Euglena gracilis, have been compared by electrophoresison SDS-polyacrylamide gels. The proteins of the cytoplasmicribosomes were more numerous and larger on the average thanthose of the chloroplast ribosomes. There were about 14 proteins detected in the small subunit ofthe chloroplast ribosome, ranging from 11,000 to 43,000 daltonsand 16 proteins of 10,000 to 36,000 daltons from the large subunit.The banding patterns of the proteins of the subunits were quitedistinct from each other. The subunits of the cytoplasmic ribosomes were obtained by dissociationof the monomer with EDTA, and in 100 mm and 500 mil KCl andthe effects of these conditions of dissociation on the proteinsof the subunits compared. Regardless of the means of dissociation,the small and large subunits each gave 20–21 proteinsranging from 10,000 to 49,000 daltons. However, a comparisonof scans of the subunits indicated a selective and partial strippingof ribosomal proteins by high salt and by EDTA; i.e. differentproteins were sensitive to the two treatments. Native subunits, presumed to occur free in the cytoplasm werealso isolated. In addition to the ribosomal proteins found insmall subunits obtained by dissociation, the native small subunitcontained substantial amounts of high-molecular-weight proteins. Small, variable amounts of high-molecular-weight proteins arealso associated with chloroplast ribosome subunits, but thequantities depend on the method of purification of the subunits.Because these components are virtually eliminated followingtwo cycles of density gradient centrifugation, we infer thatthey are adventitious. These observations reflect on the relative merit among severalreported methods of purification of chloroplast and cytoplasmicribosomes. ¹ Present address: Department of Biochemistry, College of Medicineand Dentistry of New Jersey, Piscataway, N.J. 08854, U.S.A. (Received May 13, 1975; )     

Synthesis and turnover of hdRNA and mRNA in the salivary gland of the blowfly Calliphora erythrocephala.

We have measured the absolute molar rates of synthesis, accumulation, and turnover of blowfly salivary gland heterodisperse RNA. Twelve- and 84-hr-stage third-instar Calliphora erythrocephala larvae were injected with [³H]adenosine, and its flow into glandular ATP, heterodisperse RNA, and polyadenylated RNA was each quantitated over a 360-min time course. The results of these experiments indicate that at least 80% of the newly synthesized heterodisperse RNA mass is a >28 S nuclear species whose average first-order half-life is approximately 20 min. The remaining 20% of the heterodisperse RNA has a 6–28 S size distribution, accumulates in the cytoplasm, and is associated with functional polysomes. The average first-order half-life of this more stable species is 20–25 hr. In addition, we have independently quantitated by optical methods the developmental change in the content of polysome-associated mRNA. The mRNA in these studies also has an average first-order half-life of 25 hr and accounts for 25–55% of the mRNA mass predicted by the incorporation-kinetic analysis of the pulse-labeled heterodisperse RNA. Despite the increased polyteny of the older stage glands, the rates of synthesis and accumulation of each of the individual heterodisperse RNA classes are the same at the 12- and 84-hr stages. Collectively, these results demonstrate that salivary gland functional specialization results from the accumulation of long-lived mRNA and not from changes in the overall rate of mRNA synthesis.     

Feeding of nauplius stages of Eudiaptomus gracilis on mixed plastic beads

Eudiaptomus gracilis makes up 30–40 and 80–90% ofthe zooplankton in Lake Balaton during the summer and the winterrespectively. More than half of the species population consistsof nauplii We studied feeding and size selectivity of naupliiin suspensions which contained polystyrol latex beads in a concentrationdose to the natural seston. Guts of NI nauplii were free ofboth beads and remnants of natural food Of NII–NVI nauplii,67–87% took in beads. Older animals consumed more andlarger particles. The maximum diameter of ingested beads reached29 µm On an average, NII nauplii took in 128 µm³of beads in 10 min, whereas older animals consumed 615–900µm³. The clearance rate remained below 0 01 µl h^–1NII nauplii strongly preferred 1 2 µm particles Oldernauplii did not show any preference or selected only slightlyfor the smallest particles. Nauplii rejected 4–11 µmbeads. In some cases a weak positive selection could be observedtoward 12 µm or larger beads.     

Gene Activity during Germination of Spores of the Fern, Onoclea sensibilis: RNA and Protein Synthesis and the Role of Stored mRNA

Pattern of ³H-uridine incorporation into RNA of spores of Onocleasensibilis imbibed in complete darkness (non-germinating conditions)and induced to germinate in red light was followed by oligo-dTcellulose chromatography, gel electrophoresis coupled with fluorographyand autoradiography. In dark-imbibed spores, RNA synthesis wasinitiated about 24 h after sowing, with most of the label accumulatingin the high mol. wt. poly(A)^–RNA fraction. There was noincorporation of the label into poly(A) ⁺ RNA until 48 h aftersowing. In contrast, photo-induced spores began to synthesizeall fractions of RNA within 12 h after sowing and by 24 h, incorporationof ³H-uridine into RNA of irradiated spores was nearly 70-foldhigher than that into dark-imbibed spores. Protein synthesis,as monitored by ³H-arginine incorporation into the acid-insolublefraction and by autoradiography, was initiated in spores within1–2 h after sowing under both conditions. Autoradiographicexperiments also showed that the onset of protein synthesisin the cytoplasm of the germinating spore is independent ofthe transport of newly synthesized nuclear RNA. One-dimensionalsodium dodecyl sulphate-polyacrylamide gel electrophoresis of³⁵S-methionine-labelled proteins revealed a good correspondencebetween proteins synthesized in a cell-free translation systemdirected by poly(A) ⁺RNA of dormant spores and those synthesizedin vivo by dark-imbibed and photo-induced spores. These resultsindicate that stored mRNAs of O. sensibilis spores are functionallycompetent and provide templates for the synthesis of proteinsduring dark-imbibition and germination. Key words: Onoclea sensibilis, fern spore germination, gene expression, protein synthesis, sensitive fern, stored mRNA     

Cytoplasmic Free Ca2+ in the Marine Alga Acetabularia: Measurement with Ca2+ -selective Microelectrodes and Kinetic Analysis

Neutral carrier–based Ca²⁺ –selective microelectrodeshave been examined for application in concentrated multi–ionsolutions. Calculations with data from the literature and ourcalibration series with Ca²⁺ –EGTA buffers (a convenientalgorithm for theircalculation is given) provide the physico–chemicalconditions for determination of submicromolar concentrationsof free Ca²⁺ in the cytoplasm (with about 400 mM K⁺ and 70 mMNa⁺) of the marine alga Acetabularia acetabulum. The experimentalresults give a cytoplasmic concentration of 560 nM free Ca²⁺corresponding to 140 nM activity. Recordings of cytoplasmicCa²⁺ uponremoval and re-addition of external (10 mM) Ca²⁺ showsteady–state changes by about 50 nM (following the directionof external Ca²⁺) which are preceded by transient over shoots.These kinetics are better described by damped oscillations ofa feedback control system than by two superimposed exponentials.Using the maximum rate of decrease of cytoplasmic Ca²⁺ uponremovalof external Ca²⁺, a unidirectional Ca²⁺ efflux of 0.3µmol m^–2 s^–1 is determined which is consideredto mark the steady–state turnover of Ca²⁺ at the plasmalemma.This high rate and the high electrochemical driving force forCa²⁺ (about – 580 mV)across the plasmalemma at a restingvoltage of about – 170 mV, point to a powerful Ca²⁺ transportsystem which cannot sufficiently be fuelled by ATP–hydrolysisbut requires additional energy Key words: Acetabularia, Ca²⁺–selective microelectrode, cytoplasmic free calcium, EGTA–buffer, homeostasis, plasmalemma     

Characterization and Translation of Poly(A)+RNA from Wounded and Crown Gall Tissues of Potato Tubers

Poly(A)⁺ and poly(A)^–RNA from wounded potato tuber tissuesand crown gall tumors were separated from total RNA by oligodeoxythymidylicacid-cellulose affinity chromatography. The poly(A)⁺RNA wascharacterized by sucrose density gradient centrifugation, hybridizationwith ³(H)polyuridylic acid [Poly(U)] and in vitro translationin a rabbit reticulocyte lysate system. The tumor poly(A)⁺RNAwas a heterodisperse mixture from 3.5S to 35S. Upon poly(U)hybridization of the gradient fractions two major hybridizationpeaks at 7S and 21S and two peaks at 11S and 16S appeared. Inan in vitro translation system the poly(A)⁺RNA programmed thesynthesis of 23 different polypeptides of 9,000 to 79,800 daltonsmolecular weight as determined by SDS-polyacrylamide gel electrophoresis.The 21S poly(A)+RNA was about 5 times more active in in vitroprotein synthesis than the 7S poly(A)⁺RNA. The poly(A)⁺RNA from wounded tissues was also heterodisperse(from 4.5S to 31S) with a modal peak at 18S. This RNA codedfor at least 28 polypeptides, which were different from thoseof crown gall tumor tissues. On a per unit poly(A)⁺RNA basis the tumor RNA was slightly moreactive in translation than that from wounded tissues. The translationof tumor poly(A)⁺RNA was completely blocked by 0.5 mM 7-methylguanosine5'-phosphate, but not by 7-methylguanosine, suggesting the presenceof a 5'-cap structure. (Received May 15, 1982; Accepted June 30, 1982)     

Ion Fluxes in 'Isolated' Guard Cells of Commelina communis L.

Ion fluxes have been measured in ‘isolated’ guardcells of Commelina communis L. using ⁸⁶RbCl and K⁸²Br, in epidermalstrips in which all cells other than guard cells have been killedby treatment at low pH. To avoid problems of slow free spaceexchange most fluxes have been measured at pH 3.9, at whichstomata open well in K(Rb) Cl(Br) and are stable for many hours.At pH 3.9 the intracellular ⁸⁶Rb exchanged as a single compartmentwith a half-time of 2–3 h, independent of external concentration(C_o). The influx of ⁸⁶Rb rose with concentration, to a V_maxof about 23 pmol mm^–2 h^–1. The efflux curve of ⁸²Brcould be well fitted by two exponential terms, with half-timesof 38 min (independent of C_o), and 5–35 h (falling withincreasing C_o). Bromide contents of cytoplasm and vacuole (Q_cand Q_v), and fluxes at plasmalemma and tonoplast, were calculatedfrom the efflux kinetics. Over C_o 20–60 mM, as the apertureincreased from 7 µm to 17 µm, the tonoplast flux(0.5–11.5 pmol mm^–2h^–1) was always much lessthan the plasmalemma flux (7–77 pmol mm^–2 h^–1).Q_c and Q_v both increased with aperture. The increase in Q_c of10.3 pmol mm^–2 µm^–1 is adequate to accountfor the osmotic changes required to change the aperture, aspreviously estimated. However, the change in vacuolar contentof only 5.9 pmol mm^–2 µm^–1 is much too smallto account for the osmotic changes required, or to balance thecytoplasmic changes. It appears therefore that increasing KBroutside not only increases the cytoplasmic salt content, andthe Br flux at the tonoplast, but also stimulates the vacuolaraccumulation of some other solute.