筛选代表小鼠植入前胚胎紧密化相关基因的EST

分别收集181及241枚昆明白小鼠8细胞早期胚胎及8细胞紧密化胚胎,采用SMART PCR方法直接合成胚胎双链cDNA。进而运用抑制消减杂交技术（SSH）对8细胞早期胚胎及8细胞紧密化胚胎的基因表达进行研究,并将所获得的差异表达产物按片段大小分段分离纯化后克隆入pUCm-T载体中,经PCR鉴定后挑选阳性克隆进行测序,筛选出27个代表8细胞早期胚胎和紧密化8细胞胚胎差别表达基因的cDNA片段;经与GenBank中收录的序列进行同源性匹配分析,证实其中17个cDNA片段为新的EST,提交GeneBank后被接受并给予了新序列编号。这17个片段均可能为与紧密化密切相关的新基因的表达片段,为进一步克隆新的紧密化相关基因的全长cDNA及后续新基因的结构和功能研究打下基础。通过采用不同长度大小片段分别克隆的方法,可获得较长片段的EST,避免差异表达大片段的丢失。Abstract: A total of 181 8-cell embryos and 241 8-cell compacted embryos were collected respectively from Kunmingbai mouse and their cDNA was synthesized directly using SMART PCR. Genes, which expressed differently between early 8-cell embryos and 8-cell compacted embryos, were investigated using the method of suppression subtractive hybridization (SSH). Then PCR production was cloned into pUCm-T vector respectively according to the size after isolated and purified. Twenty-seven ESTs (expressed sequence tags ) of genes expressed differently between early 8-cell embryos and 8-cell compacted embryos have been isolated and cloned. seventeen of those were novel ESTs after being confirmed by blaster matching in GenBank for homology analysis. And they were banked into GenBank with accession numbers. All 17 ESTs might be for novel genes related to compaction in compacted embryos. And longer ESTs may be obtained by cloning according to the size.     

小鼠植入前胚胎紧密化相关基因Crg1的克隆

从已获得的运用抑制消减杂交技术(Suppression Subtractive Hybridization,SSH)分离、克隆和筛选代表8-细胞早期胚胎和紧密化8-细胞胚胎差别表达基因的ESTs片段(GenBank登录号：BQ740263、BQ740251)入手,经比较二者的同源性发现这两个EST末端反向互补,拼接成一个cDNA片段,经分析此序列包含一个完整的阅读框,提交给GenBank,登录号为AY134859。根据此序列设计引物从小鼠8-细胞紧密化胚胎cDNA中经PCR扩增出目的片段,克隆入pUCm—T载体后测序而获得全长cDNA,为小鼠植入前胚胎紧密化相关基因Crg1,分析比较证明Crg1基因与AY134859基本吻合。Crg1基因的cDNA全长为810bp,只有一个外显子,编码由150个氨基酸组成,分子量理论值为17．67kD的蛋白质。与最新的小鼠基因组工作草图进行电子杂交,该基因被定位在小鼠的14号染色体上。RT—PCR实验证明在小鼠植入前各个时期的胚胎、小鼠胚胎干细胞中均有表达,在小鼠胚胎成纤维细胞中没有表达。半定量RT—PCR实验证明Crg1基因在紧密化胚胎中表达较8—细胞胚胎高。采用Northern—blot手段分析Crg1基因在成年小鼠的8种组织中的表达情况,结果表明该基因只在小鼠卵巢中有微弱的表达,转录本大小为1．2kh,而在成年小鼠的脑、心脏、肾、睾丸、肝脏、肺、脾等中没有表达。研究表明,Crg1基因可能与小鼠胚胎紧密化及保持细胞的全能性相关。     

兔单个植入前克隆胚胎cDNA文库的构建

人与小鼠和牛在正常胚胎植入前发育过程中基因活化的研究已经取得了长足的进展 ,但是还没有对同期克隆胚胎相关研究的报道 .利用单个家兔植入前移核重构胚胎成功地构建了MⅡ卵母细胞及发育至 4 、8 细胞期的胚胎和囊胚的特异性cDNA文库 .并用 β肌动蛋白和LAPTM4α证实这类文库是可靠的 .以 8 细胞期移核重构胚cDNA文库为例 ,随机挑取克隆进行测序分析 :其中 2 3的基因EST片段可以在GenBank或EST库中找到同源序列 ,约 1 3的EST片段属于未知的新片段 ,表明这是一类重要的新兴基因资源库 (期特异性EST库 ) .这种利用单胚胎构建cDNA文库的方法 ,解决了胚胎研究材料受限的问题 ,在时间上更加精确 ,更符合胚胎发育的规律 ,也能够更加准确地反映出一些克隆胚胎的异常表型 ,是研究早期胚胎发育基因表达以及克隆胚胎再程序化基因表达的一种有效手段 .     

一个人类凋亡相关新基因TFAR15的cDNA克隆化与表达

运用cDNA RDA(cDNA Representationaldifferencesanalysis)的方法 ,已获得了在细胞因子依赖性红白血病细胞系TF 1中撤除GM CSF(Granulocytemacrophage colonystimulatingfactor)后表达增高的多个基因片段 ,其中一个经GenBank检索为新基因 .利用RACE (rapidamplificationofcDNAends)和EST (expressedsequencetags)重叠片段拼接的方法克隆了该基因的cDNA全长序列 ,命名该基因为TFAR1 5 (TF 1cellapoptosisrelatedgene 1 5 ) .TFAR1 5全长cDNA由 1 2 1 8个碱基组成 ,其分布十分广泛 .随着GM CSF的去除 ,TF 1细胞中TFAR1 5的mRNA和蛋白表达水平均有不同程度的增高 .体外活性研究发现 ,重组TFAR1 5蛋白片段可抑制人胚肾细胞 2 93的自然凋亡 .     

用DDRT-PCR技术克隆小鼠早期胚胎发育相关基因

mRNA差异显示 (DDRT PCR)技术在哺乳动物早期胚胎发育相关基因研究中的应用 ,因获得足够量的早期胚胎材料困难而受到限制 .通过对DDRT PCR技术各种条件参数进行优化组合 ,并对某些环节进行改良 ,以小鼠的MⅡ卵、2 细胞胚胎和 4 细胞胚胎为材料进行差异显示 ,仅以相当于5 0个卵细胞的量为起始材料 ,便得到了理想的差示结果 .从差异条带中挑取感兴趣的差异条带进行回收、阳性鉴定、亚克隆、序列分析、并在反向Northern杂交基础上设计了鉴定实验 .结果发现 ,有一个片段差异显著且是阶段性特异表达 .经GenBank检索 ,发现该片段仅有同源的EST ,其全长及功能尚不清楚 ,是一个功能未知基因 ,将该片段命名为ed1.反向Northern杂交结果表明 ,ed1在 2 细胞期胚胎中有表达 ,而在MⅡ卵及 4 细胞胚胎中均不表达 .     

一个血清抑制基因的克隆

比较血清培养细胞和血清饥饿细胞的基因表达差异,获得了一段血清饥饿细胞中特异表达的cDNA序列,以此序列出发,通过搜索表达序列标签(EST),拼接出完整的基因序列,通过PCR分段克隆获得全长cDNA序列.该基因全长5 429 bp,编码框预测有791个氨基酸残基.GenBank搜索,该基因与已有的细胞周期调控基因没有同源性.所以,该基因是一个新的与细胞周期有关的基因（GenBank接受号：AY050169）.由于该基因最初发现在无血清培养条件下表达,故叫血清抑制基因（serum inhibit gene,Si-1基因）.     

静电纺丝的主要参数对PLGA纤维支架形貌和纤维直径的影响

EST(expressed sequence tags,EST)是一段长约150～500bp基因表达的外源序列片段,是由大规模随机挑取的cDNA克隆测序得到的组织或细胞基因组的表达序列标签。一个EST代表生物某一时期的某种组织或细胞的一个表达基因。主要综述了EST技术的原理方法,哺乳动物早期胚胎研究的理论基础以及EST技术在早期胚胎研究方面的应用,并讨论了利用EST进行研究分析的发展趋势。     

EST技术及其在哺乳动物早期胚胎研究中的应用

EST(expressed sequence tags ,EST) 是一段长约150～500 bp的基因表达的外源序列片段,是由大规模随机挑取的cDNA克隆测序得到的组织或细胞基因组的表达序列标签。一个EST代表生物某一时期的某种组织或细胞的一个表达基因。本文主要综述了EST技术的原理方法,哺乳动物早期胚胎研究的理论基础以及EST技术在早期胚胎研究方面的应用,并讨论了利用EST进行研究分析的发展趋势。     

抑制差减杂交法分离玉米幼苗淹水诱导表达基因

以淹水处理(submergence-treated, ST)的玉米(Zea mays L.)幼苗根部cDNA为目标群体,未处理(untreated, UT)的玉米幼苗根部cDNA为对照群体,进行抑制差减杂交.用经过UT差减的ST cDNA构建了一个含有大约2 000个独立克隆的差减文库.对随机挑取的408个克隆进行差异筛选,获得了184个在ST中特异表达或表达增强的候选克隆.对其中155个cDNA克隆测序并去除重复克隆后,共得到95个差异表达的cDNA片段.GenBank中BLAST查询结果表明:6个克隆为已知的玉米核苷酸序列;68个克隆与已知基因或EST序列部分区域的同源性为60%～90%;21个克隆在GenBank中无法查到对应的同源序列,可能代表了新基因,或者由于序列位于变异丰富的3′端而无法查到与其他物种基因的同源性.     

用一个简单快速的RT-PCR技术筛选白细胞介素-6作用相关基因

为了研究白细胞介素-6(IL-6)作用相关基因以及一些可能受IL-6调控的基因,利用一个简单快速的以PCR为基础的方案,检测了IL-6处理和未处理的Sko007细胞中基因表达的差异,克隆并鉴定了差异表达基因的cDNA片段.首先用6-mer寡核苷酸引物进行反转录从而最大限度地将mRNA编码区序列生成cDNA;然后用2或3个较长的随机引物进行PCR扩增,并以不同引物组合重复PCR增扩;扩增产物在2%琼脂糖凝胶上电泳分离,回收差异片段并直接用于克隆、测序及进一步分析.在此研究中,获得了3个表达序列标签(EST),其中一个为新的基因片段,反向RNA杂交有力证实了它们与IL-6作用的相关性.进一步的生物信息学分析表明,新基因片段STRF17在多种组织中表达.     

Annealing control primer system identifies differentially expressed genes in blastocyst-stage porcine parthenotes

There is very little information available on stage-specific gene expression during early embryo development, particularly in the pig. Here, we accurately identified the genes that are specifically or prominently expressed in parthenogenetic porcine blastocysts as compared with 2-cell stage embryos. We accomplished this by using a PCR technology regulated by annealing control primers (ACPs). By utilizing 120 ACPs, a total of 46 expressed sequence tags (ESTs) of genes that are differentially expressed in blastocysts as compared with 2-cell stage embryos were cloned and sequenced. The cloned genes or ESTs all exhibited significant sequence similarity with known genes or ESTs of other species. Of the known genes, six genes [renin-binding protein (RNBP), BMDP, solute carrier family 25 (SLC25A6), MTHFD1, TRK-fused gene (TFG), spermidine synthase (SRM)] were selected and their stage-specific expression levels in porcine parthenotes were determined by real-time quantitative polymerase chain reaction at the 1-, 2-, 4-cell, morula and blastocyst stages. While RNBP, BMDP, SLC25A6, MTGFD1 and SRM were highly expressed only at the blastocyst stage, TFG was highly expressed at the 1-cell stage, then declined after genomic activation, high levels of expression being again detected at the morula and blastocyst stages. This analysis suggests that the ACP system is an effective tool for use in the identification of stage-specific genes in small numbers of porcine parthenotes. Examination of the genes differentially expressed in the blastocyst, which we have identified here, will provide insight into the molecular basis of preimplantation development.     

猪早期孤雌激活胚不同发育阶段差异基因表达的研究

收集2细胞、4细胞、8-16细胞时期的猪孤雌激活胚,采用SPEDDRT-PCR方法挑选不同时期的差异表达产物,通过反向northern杂交去除假阳性的条带。将阳性条带克隆入T载体中,经过PCR鉴定后挑选其中的阳性克隆进行测序,筛选了8个代表不同时期表达差异的cDNA片段,编号为DD1-DD8。经过与GenBank中的数据进行同源性分析,发现其中DD1和DD2没有相似的数据, 提交数据库获得GenBank登录号(EU545158, EU545159);其余的DD3-DD8发现了相似性较高的数据,但除DD3外均无基因功能说明需要进行进一步的研究。     

Compaction rate of in vitro fertilized bovine embryos related to the interval from insemination to first cleavage

A study was conduced on early cleavage divisions and timing of compaction in bovine preimplantation-stage embryos. Zygotes were produced using conventional in vitro maturation and fertilization procedures. Twenty hours post insemination, the zygotes were denuded and cultured with oviduct epithelial cells in B2 medium + 10% estrous cow serum. Starting at 24 hours post insemination, the embryos (n=657) were evaluated every 6 hours and then were put into different co-culture drops according to their cell number. Starting from 78 hours post insemination, the cleavage rate was evaluated every 12 hours. Embryos were stained with Hoechst 33342 at the compacted morula stage or when they were degenerated, at 162 hours post insemination. Developmentally capable embryos were characterized by a rapid cleavage rate in the first 3 cell cycles and by an extended 8- to 16-cell stage. Peak concentrations of 2-, 4-, 8- and 16-cell stages emerged at 36, 42, 60 and 102 hours post insemination, respectively. Compaction did not occur until 126 hours post insemination. The rate of compaction was significantly higher in embryos that were at the 2-cell stage before or at 36 hours post insemination (P < 0.05). The mean cell numbers of compacted morulae that were identified at 126 and 138 hours post insemination were 30.9 +/- 6.8 and 31.6 +/- 7.7, respectively. These results indicate that developmentally capable bovine embryos reach the 2-cell stage at 36 hours post insemination, and that they become compacted at the 32-cell stage, which usually occurs between 126 and 138 hours post insemination.     

Inhibition of DNA replication in preimplantation mouse embryos by aphidicolin

The regulation of trophectoderm differentiation in mouse embryos was studied by inhibiting DNA synthesis with aphidicolin, a specific inhibitor of DNA polymerase alpha. Embryos were exposed to aphidicolin (0.5 micrograms/ml) for 16 h at various preimplantation stages and scored for their ability to form a blastocyst and develop beyond the blastocyst stage. Embryos were most sensitive to aphidicolin at the late 4-cell stage and became progressively less sensitive as they developed. Aphidicolin inhibited blastocyst formation by 70%, 100%, 77%, and 24% after treatment at the 2-cell, 4-cell, noncompacted 8-cell, and compacted 8-cell stages, respectively. Although the inhibitory effect of aphidicolin on blastocyst formation decreased markedly as 8-cell embryos underwent compaction, developmental capacity beyond the blastocyst stage was poor after treatment of either noncompacted or compacted 8-cell embryos. Treatment at the morula and early blastocyst stages was less harmful to embryos than treatment at earlier stages but reduced the number of trophoblast outgrowths by interfering with hatching. Autoradiographic analysis showed that during aphidicolin treatment, incorporation of 3H-thymidine was inhibited over 90% at all stages examined, indicating an inhibition of DNA synthesis. Because inhibition of blastocyst formation by aphidicolin decreased at the compacted 8-cell stage, we suggest that approximately the first half of the fourth DNA replication cycle is critical for subsequent blastocyst formation. Furthermore, the poor further development of blastocysts formed after aphidicolin treatment of compacted 8-cell embryos suggests that the DNA replication requirements for initial trophectoderm differentiation are distinct from requirements for further development of blastocysts in vitro.