DNA relatedness among bacteriophages of the morphological group C3

Six bacteriophages with an elongated head and a short, noncontractile tail were compared by DNA-DNA hybridization, seroneutralization kinetics, mol% G+C and molecular weight of DNA, and host range. Three phage species could be identified. Phage species 1 containedEnterobacter sakazakii phage C2,Erwinia herbicola phages E3 and E16P, andSalmonella newport phage 7–11. These phages had a rather wide host range (4 to 13 bacterial species). DNA relatedness among species 1 phages was above 75% relative binding ratio (S1 nuclease method, 60°C) when labeled DNA from phage C2 was used, and above 41% when labeled DNA from phage E3 was used. Molecular weight of DNA was about 58×10⁶ (C2) to 67 ×10⁶ (E3). The mol% G+C of DNA was 43–45. Anti-C2 serum that neutralizes all phages of species 1 does not neutralize phages of the other two species. Species 2 contains only coliphage Esc-7-11, whose host range was only oneEscherichia coli strain out of 188 strains of Enterobacteriaceae studied; it was unrelated to the other two species by seroneutralization and DNA hybridization. DNA from phage Esc-7-11 had a base composition of 43 mol% G+C and a molecular weight of about 45×10⁶. Species 3 contains onlyProteus mirabilis phage 13/3a. Its host range was limited to swarmingProteus species. Species 3 was unrelated to the other two species by seroneutralization and DNA hybridization. DNA from phage 13/3a had a base composition of 35 mol% G+C and molecular weight of about 53×10⁶. It is proposed that phage species be defined as phage nucleic acid hybridization groups.     

The anomalous shear lability of SP 50 DNA

Summary SP50 DNA (M. W.=97×10⁶ Daltons) shows an unusual shear lability. At low shear rates SP50 DNA is more susceptible to hydrodynamic shear than the longer T2 DNA (M. W.=130×10⁶ Daltons). This unusual fragility of SP50 DNA is atributed to the presence of a small number of weak points in SP50 DNA. Most likely these weak points are identical with the single-strand breaks in SP50 DNA.     

Infection of spheroplasts of Pseudomonas with DNA of bacteriophage PM2

Summary Spheroplasts of Pseudomonas BAL-31/PM2, obtained by treatment of the bacteria with lysozyme, can be infected with purified DNA from bacteriophage PM2. After 4 h of incubation the yield of progeny phage reaches a value of 10⁷-6×10⁷ plaque forming units/g PM2 DNA. The yield increases linearly with the concentration of DNA over at least 3 orders of magnitude.The biological activity of double-stranded circular PM2 DNA containing one or more single-strand breaks per molecule (component II), does not differ significantly from that of intact PM2 DNA (component I). Single-stranded PM2 DNA obtained by denaturation of component II, and the irreversible alkali-denatured form of component I are also infective.     

Named species and hosts of Sarcocystis (Protozoa: Apicomplexa: Sarcocystidae)

Summary A list is given of the present 93 species of the apicomplexan protozoan genus Sarcocystis together with their definitive and intermediate hosts (if known), synonyms, homonyms, lapsi calami, etc. The names of many species of this genus are poorly known, in doubt or controversial due to lack of access to some of the literature and to failure to accept the International Code of Zoological Nomenclature.The following taxonomic innovations are introduced: New species—S. nontenella for S. tenella Eble, 1961 [non] S. tenella (Railliet, 1886) from the buzzard Buteo buteo; S. scotti for Sarcocystis sp. from the housemouse completing its sexual development in the tawny owl, Strix aluco (see Tadros & Laarman, 1980); New combinations—S. ctenosauris for Cryptosporidium ctenosauris Duszynski, 1969 from the lizard Ctenosaura similis; S. lampropeltis for Cryptosporodium lampropeltis Anderson, Duszynski & Marquardt, 1968 from the king snake Lampropeltis c. calligaster; S. roudabushi for Isospora roudabushi Pellérdy, 1974 from the gopher snake Pituophis s. sayi; and S. tropicalis for Isospora tropicalis Mukherjea & Krassner, 1965 from the golden jackal Canis aureus.Supported in part by National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland research grant AI15367.Supported in part by National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland research grant AI15367.     

Infection of transformable cells ofHaemophilus influenzae by bacteriophage and bacteriophage DNA

Summary A phage HP1, infecting transformable cells ofHaemophilus influenzae Rd, has been isolated. The general properties of the wild type and of a clear plaquemutantc1 employed for most of the experiments are described. Phage DNA is infective for transformableHaemophilus cells with an efficiency (plaqueforming units of the original phage recovered as DNA-infected cells) of up to 6×10^–3. The competence ofHaemophilus cells for infection with phage DNA parallels the competence for transformation with bacterial DNA.Both HP1 and thec1 mutant are able to lysogenize their host, and the lysogenic cells are readily induced by UV. Competent non-lysogenicHaemophilus cells can be infected by DNA of lysogenic cells, thereby giving rise to phage progeny. Thus, the phage genetic material can be introduced into competentHaemophilus cells in three different ways: injection from intact phage, and infection with either phage DNA or with bacterial DNA carrying the prophage.The UV inactivation curves for infectious phage DNA and for complete phages are similar, both indicating the occurrance of host-cell reactivation. Photoreactivationin vitro of infectious phage DNA takes place to about the same high extent as observed with bacterial transforming DNA.The usefulness of this system for investigating bacterial transformation and biological effects ofin vitro treatment of DNA is discussed.with the technical assistance ofSandra J. Antoine With 4 Figures in the TextPreliminary report presented at the 7th Annual Bacterial Transformation Meeting, Aspen, Colorado, June 17–19, 1963.Supported by a travel grant from the Deutsche Forschungsgemeinschaft.Supported by Research Carreer Development Award GM-K3-7500 and Research Grant RH 00221 from the U.S. Public Health Service.     

Characterization of a new Bacillus megaterium bacteriophage,MJ-1, from tropical soil

A new Bacillus megaterium bacteriophage is characterized. It is a tailed phage with regular polyhedral head belonging to Bradley's group B. Head and tail dimensions are 56.4 and 300 nm, respectively. Lysis was restricted to strains of B. megaterium. No antigenic relationship with pumilus phage FP-1 or subtilis phage FS-1 was observed. The phage is sensitive to 60°C and moderately sensitive to chloroform. The nucleic acid is double-stranded linear DNA with a G-C mole % of 38.8 and a mol wt of (53±3)×10⁶.     

A circadian rhythm of the luciferin binding protein fromGonyaulax polyedra

Summary It has previously been shown that a protein extracted fromGonyaulax polyedra strongly and specifically binds luciferin, the substrate of the bioluminescent reaction. This binding is markedly dependent on pH with tight binding at pH 8.0 and almost no binding at pH 6.5, as measured by two independent methods. A procedure for the determination of the dissociation constant (K_d) of the luciferin binding protein (LBP) is presented, and K_d is estimated to be7×10^–9 M at pH 8.0, assuming an overall quantum yield of 0.1 for the bioluminescent reaction. With cells grown in a 12 h light — 12 h dark cycle, 5 to 10 times more LBP activity can be extracted from dark phase cells than from light phase cells. This rhythm persists in a circadian fashion in cultures maintained in constant dim light.Supported in part by a grant from the National Institutes of Health to J.W.H. (GM 19536)     

Phage-inactivating Effect of Iron(II)-Ascorbate Complex

The effect of iron(II)-ascorbate complex on various phages was investigated. At 10- ⁶ M, the complex inactivated all nine phages examined. The mechanism of the inactivation was studied with phage J1, the most sensitive to the complex. The addition of H₂O₂ or Cu²⁺ to the reaction mixture increased the inactivation. Bubbling of nitrogen through the reaction mixture and the addition of Fe³⁺, a reducing agent, a chelating agent, or a radical scavenger prevented inactivation. These findings suggest the involvement of oxygen radicals in the inactivation. The complex had no effects on the SDS-PAGE pattern or amino acid composition of bovine serum albumin, or the structural protein of phage J1. The complex nicked the supercoiled form of pUC18 DNA, giving first single-stranded breaks (the open circular form) and then double-stranded breaks (the linear form). Strands of M13mp8 DNA, λDNA, and J1 DNA were also broken. The breaks could account for the inactivation.     

Action of hydroxyurea on chromosome physiology in Rhynchosciara angelae

Experiments have been performed to investigate the action of hydroxyurea (H.U.) on the polytene chromosomes of the salivary gland of Rhynchosciara angelae. After different times of H.U. treatment, larvae were injected with ³H-thymidine for a pulse of 10 min. DNA puffs were analysed especially in those regions where differential incorporation of thymidine occurs. H.U. progressively inhibited thymidine incorporation all over the chromosome. The maximum of inhibition occurs 9 hours after the treatment. However, after 227 hours the chromosome label was similar to that in the controls and puff 2B recovered its original size. The puff 3C showed a delay in its appearance. Our results show that H.U. inhibits temporarily the opening rate of the puff, as well as DNA synthesis. There is no reaction on RNA puffs.This work was supported by a grant from the National Institutes of Health (GM 17590-03), Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) of which one of us (G.M.M.S.) was a fellow during this research, and the Conselho Nacional de Pesquisas (CNPq).     

Temperature-sensitive mutations in Drosophila melanogaster. XIV. A selection of immobile adults

Summary Improved methods for rearing and screening large numbers of flies permitted the recovery of 10 mutations exhibiting a reversible temperature-dependent adult paralysis among 1.1×10⁶ flies tested. Of the 10 mutations, two were allelic to para ^ts,two were alleles in a new locus, stoned (stn), and six fell into a third area, the shibire (shi) locus. Several of the shi alleles cause embryonic, larval and adult paralysis at 29° C as well as structural anomalies of various tissues. In addition to the ts mutations, several non-conditional mutations affecting adult movement were recovered.This work was supported by the National Research Council of Canada, grant A-1764, National Cancer Institute of Canada, grant 6051.Medical Research Council of Canada Postdoctoral Fellow.     

A freeze-squeeze method for recovering long DNA from agarose gels

Long DNA can be recovered from agarose gels after electrophoresis by freezing the gel slices and manually squeezing out liquid containing the DNA. With this method the recoveries of phage T₇ DNA (molecular weight 25 × 10⁶) and the open and closed forms of circular phage PM2 DNA (molecular weight 6 × 10⁶) were about 70%. Sedimentation analysis shows that the extruded DNA has not sustained double- or single-stranded breaks. The extruded DNA can be used without further purification as substrate for the restriction endonuclease Hind_II,III, from Hemophilus influenzae, for DNA·DNA hybridization and for electron microscopy.     

Successful cardiac allografts in syngeneic radiation chimeras

Summary Successful cardiac allografts were accomplished across the major histocompatibility complex of rats. LEW and F344 (Ag-B ²) rats were lethally irradiated and grafted with WF (Ag-B ¹) hearts on day 0. Either on day 0 or day 2, the hosts were repopulated with syngeneic hemopoietic cells. The best results were obtained (86%) when a mixture of 3.0 × 10⁷ non-adherent syngeneic bone marrow and thymus cells were used to repopulate the recipients. In contrast, all of the WF to LEW heart grafts were rejected within 30 days if syngeneic thoracic duct and bone marrow cells were used to repopulate the host.Supported by Grant HL18186 from the National Institutes of HealthRecipient of a Research Career Development Award CA70879 from the National Institutes of Health     

Stimulation of trophoblastic giant cell differentiation in the homozygousYellow mouse embryo

Escape from pre-implantation lethality by homozygousyellow embryos depends on differentiation of trophoblastic cells. The evidence presented herein suggests that progesterone stimulated differentiation of trophoblastic giant cells in some homozygousyellow blastocysts and thereby increased the percentage ofA ^y/A^y “escaper” embryos. This work was supported in part by funds from research grant HDOOO36, National Institute of Child Health and Development, National Institutes of Health, U.S.A.     

Distribution and localisation of induced breaks in the chromosomes of Bellevalia. 3. Sodium nitrite

Summary Nitrous acid induces fragmentation of chromosomes and only very few translocations in Bellevalia romana (2n=8). A total of 1098 breaks is induced by 1×10^-3, 1,5×10^-4 and 1,5×10^-5 M NaNO₂ at pH 4,5. Root tips were fixed at 24, 48 and 72 hours after treatment for 1 hour.The percentage of breaks increases with time between treatment and fixation; it reaches its highest level at 1,5×10^-4 M, which dose coincides with the lowest mitotic rate.A dose influence on the distribution of breaks among the centromeres and the chromosome arms was observed. Consistent with the effect of other agents the highest number of breaks was in the A- the lowest, however, in the D-chromosome.The distribution of breaks on the different chromosome arms was homogeneous for all fixations. As observed previously the breakage frequency was not proportional to the arm length.The distribution of breaks on the proximal, median and distal sections of the chromosome arms is significantly different from random distribution.The nitrous acid-induced pattern of breaks is significantly different from that induced by methylating (MMS+NMU) and ethylating agents (DES+NEU).The known primary chemical reaction of nitrous acid and alkylating agents with DNA are inadequate alone in explaining the different patterns of breaks. More information is needed regarding the processes following these primary reactions.In conclusion, several possible objections against the technique of localizing breaks are shown to be non-valid.     

Micro-scale peptide mapping method for identification of variant proteins

A micro-scale (for protein of the order of 10^–9 mole) peptide mapping method in thin-layer cellulose is reported. Peptide maps of tryptic digests from glucagon, from normal and variant -chains of human hemoglobin, from human glucose 6-phosphate dehydrogenase, and from human phosphoglycerate kinase showed satisfactory resolution; thus this method can be used for characterizing the structure of variant enzymes and proteins of 10^–9 molar quantity.This research was supported by research grant GM 15253 from the National Institutes of Health.     

Characteristics of five bacteriophages of yellow-pigmented enterobacteria

Four bacteriophages (C2, C2F, E3, and E16P) belonging to morphological group C3 and one belonging to morphological group A3 (E16B) were purified by deuterium oxide gradient centrifugation and cesium chloride gradient centrifugation. Morphological group C3 phages had a densityd=1.534–1.541 and group A3 phage (E16B) had a densityd=1.492 in CsCl. Phages of morphological group C3 isolated onEnterobacter sakazakii (C2, C2F) and onErwinia herbicola (E3, E16P) were compared withSalmonella newport phage 7-11 with respect to host-range, genome size, antigenic relatedness, and ultraviolet and heat susceptibility. Phages C2 and C2F could multiply inEnterobacter cloacae, E. sakazakii, Erwinia herbicola, E. rhapontici, andLevinea malonatica; whereas phages E3, E16P, and 7-11 could multiply on these same species and onEscherichia coli and severalSalmonella serotypes. Molecular weights of phage DNAs were determined to be 58×10⁶ (C2), 60×10⁶ (7-11), 67×10⁶ (E3), and 39×10⁶ (E16B).All studied phages of morphological group C3 (includingSalmonella newport phage 7-11) were neutralized by anti-phage C2 serum. Despite differences in neutralization kinetics and in ultraviolet and heat sensitivities, these phages of morphological group C3 constitute one phage species. Phage E16B (morphological group A3) had a host-range limited toEnterobacter cloacae, Erwinia herbicola, andE. rhapontici; it was antigenically unrelated to the preceding phage group C3, and showed ultraviolet and heat susceptibility close to that of coliphage T4.     

Transfection of protoplasts from Streptomyces lividans 66 with actinophage SH10 DNA

Summary The slightly modified procedure for the transformation of protoplasts of S. coelicolor A3 (2) with SCP2 plasmid DNA and polyethylenglycol (PEG) (Bibb et al., 1978) was extented to infection of protoplasts of S. lividans 66 with actinophage SH10 DNA (Klaus et al., 1979).Maximal yield of transfected protoplasts was obtained at 20% PEG, 3 mM sodium-citrate and 150 mM NaCl final concentrations. The efficiency of transfection was determined to be about 2×10^-8 to 2×10^-7. The average value of competent protoplasts was about 1–2×10^-4 of regenerating protoplasts.In comparison with outgrowing spores infected with phage particles the average burst size of transfected protoplasts was reduced from 100 to 10 pfu/infected cell, the latent period prolonged from 45 min to 120 min and the rise period was not affected.     

The Production of Miniantibodies Against Human Granulocyte Colony-Stimulating Factor Using the Murine scFv Combinatory Library

To develop a phage display of single-chain antibodies (scFv), fractions of total cell DNA and RNA were obtained from splenocytes of naive mice. The DNA fragments encoding variable regions of light and heavy immunoglobulin chains were amplified and isolated using primers specific to the conservative regions of these genes. The construction of the library was based on the principle of stochastic combining the DNA fragments encoding the light and heavy antibody chains with the DNA linker, whose structure corresponded to the (Gly₄Ser)₃ sequence. The scFv library was constructed using the E. coli TG1 strain and the phagemid vector pHEN1. The repertoire of the library exceeded 5 × 10⁷ independent recombinant clones. The clones producing antibodies to human granulocyte colony-stimulating factor were isolated. The affinity constants of the resulting scFv were in the range of 2 × 10⁴ to 1.8 × 10⁷ M^–1.