Large‐scale coral reef rehabilitation after blast fishing in Indonesia

The severely degraded condition of many coral reefs worldwide calls for active interventions to rehabilitate their physical and biological structure and function, in addition to effective management of fisheries and no‐take reserves. Rehabilitation efforts to stabilize reef substratum sufficiently to support coral growth have been limited in size. We documented a large coral reef rehabilitation in Indonesia aiming to restore ecosystem functions by increasing live coral cover on a reef severely damaged by blast fishing and coral mining. The project deployed small, modular, open structures to stabilize rubble and to support transplanted coral fragments. Between 2013 to 2015, approximately 11,000 structures covering 7,000 m² were deployed over 2 ha of a reef at a cost of US$174,000. Live coral cover on the structures increased from less than 10% initially to greater than 60% depending on depth, deployment date and location, and disturbances. The mean live coral cover in the rehabilitation area in October 2017 was higher than reported for reefs in many other areas in the Coral Triangle, including marine protected areas, but lower than in the no‐take reference reef. At least 42 coral species were observed growing on the structures. Surprisingly, during the massive coral bleaching in other regions during the 2014–2016 El Niño–Southern Oscillation event, bleaching in the rehabilitation area was less than 5% cover despite warm water (≥30°C). This project demonstrates that coral rehabilitation is achievable over large scales where coral reefs have been severely damaged and are under continuous anthropogenic disturbances in warming waters.     

Field verification of the use of chemical alarm cues in a coral reef fish

Chemical alarm cues function as early indicators of a predation threat and influence the outcome of predator–prey interactions in the favour of the prey animal. The tropical goby, Asterropteryx semipunctatus, responded with a stereotypical alarm response, including reduced movement and feeding, following exposure to water that contained chemical cues from injured conspecifics under natural field conditions. Gobies did not exhibit an alarm response when challenged with extracts from damaged fish from a different taxonomic family. The behavioural response in the field was similar to that observed in laboratory experiments. This study verifies the use of chemical alarm cues in a marine fish in their natural environment.     

Strategies and trajectories of coral reef fish larvae optimizing self-recruitment

Like many marine organisms, most coral reef fishes have a dispersive larval phase. The fate of this phase is of great concern for their ecology as it may determine population demography and connectivity. As direct study of the larval phase is difficult, we tackle the question of dispersion from an opposite point of view and study self-recruitment. In this paper, we propose a mathematical model of the pelagic phase, parameterized by a limited number of factors (currents, predator and prey distributions, energy budgets) and which focuses on the behavioral response of the larvae to these factors. We evaluate optimal behavioral strategies of the larvae (i.e. strategies that maximize the probability of return to the natal reef) and examine the trajectories of dispersal that they induce. Mathematically, larval behavior is described by a controlled Markov process. A strategy induces a sequence, indexed by time steps, of "decisions" (e.g. looking for food, swimming in a given direction). Biological, physical and topographic constraints are captured through the transition probabilities and the sets of possible decisions. Optimal strategies are found by means of the so-called stochastic dynamic programming equation. A computer program is developed and optimal decisions and trajectories are numerically derived. We conclude that this technique can be considered as a good tool to represent plausible larval behaviors and that it has great potential in terms of theoretical investigations and also for field applications.     

Growth of reef fishes in response to live coral cover

Although the global decline in coral reef health is likely to have profound effects on reef associated fishes, these effects are poorly understood. While declining coral cover can reduce the abundance of reef fishes through direct effects on recruitment and/or mortality, recent evidence suggests that individuals may survive in disturbed habitats, but may experience sublethal reductions in their condition. This study examined the response of 2 coral associated damselfishes (Pomacentridae), Chrysiptera parasema and Dascyllus melanurus, to varying levels of live coral cover. Growth, persistence, and the condition of individuals were quantified on replicate coral colonies in 3 coral treatments: 100% live coral (control), 50% live coral (partial) and 0% live coral (dead). The growth rates of both species were directly related to the percentage live coral cover, with individuals associated with dead corals exhibiting the slowest growth, and highest growth on control corals. Such differences in individual growth between treatments were apparent after 29 d. There was no significant difference in the numbers of fishes persisting or the physiological condition of individuals between different treatments on this time-scale. Slower growth in disturbed habitats will delay the onset of maturity, reduce lifetime fecundity and increase individual's vulnerability to gape-limited predation. Hence, immediate effects on recruitment and survival may underestimate the longer-term impacts of declining coral on the structure and diversity of coral-associated reef fish communities.     

Habitat complexity modifies the impact of piscivores on a coral reef fish population

Patterns in juvenile mortality rates can have a profound affect on the distribution and abundance of adult individuals, and may be the result of a number of interacting factors. Field observations at Lizard Island (Great Barrier Reef, Australia) showed that for a coral reef damselfish, Pomacentrus moluccensis, juvenile mortality (over 1 year) varied between 20 and almost 100% among sites. Correlative data showed that juvenile mortality increased as a function of initial densities (recruitment), predator densities and the availability of preferred coral substrata. A multiple regression showed that these three variables together did not explain significantly more variation in mortality than the single factor showing the strongest relationship. This appeared to be because recruitment, predator densities and preferred coral substrata were all highly correlated, suggesting that one, two or all of these factors may be influencing juvenile mortality rates. One hypothesis was that density-dependent mortality in juveniles was the result of an interaction between predators (which appear to aggregate at high-recruitment sites) and the availability of preferred substrata (predator refuges). We tested this hypothesis by using both laboratory and field experiments to see whether fish predation could significantly alter survivorship of this damselfish, and whether this impact was dependent upon the coral substratum. The laboratory experiment was designed to test the effects of three common predators (Pseudochromis fuscus, Cephalopholis boenak and Thalassoma lunare) and three different coral substrata that varied in their complexity (Pocillopora damicornis, Acropora nasuta and A. nobilis) on the survival of juvenile Pomacentrus moluccensis. There was a significant interaction between predator species and microhabitat in determining survival. Pseudochromis fuscus and C. boenak were both significantly better at capturing juvenile damselfish than T. lunare. Juvenile survivorship was significantly better when they were given the more complex corals, Pocillopora damicornis and A. nasuta, compared with those given the open-structured species A. nobilis. This pattern reflects habitat selection in the field. Predators differed in their strike rates and the proportion of strikes that were successful, but all exhibited greater success at prey capture where A. nobilis was provided as shelter. The interaction between the effect of predator species and microhabitat structure on damselfish survival was tested in the field for a cohort of juvenile Pomacentrus moluccensis. We examined juvenile survival in the presence and absence of two predators that co-occur on natural patch reefs (C. boenak and Pseudochromis fuscus). The experimental patch reefs we used for this purpose were constructed from both high complexity (Pocillopora damicornis) and low complexity (A. nobilis) coral substrata. Both juveniles and predators were translocated to reefs at natural densities. The effects of predation were clearly dependent upon the microhabitat. Reefs of the high-complexity coral with predators supported the same high numbers of Pomacentrus moluccensis as the reefs with no resident predators. However, damselfish abundance was significantly lower on low-complexity reefs with resident predators, relative to the other treatments. Background rates of loss were high, even on preferred coral in the absence of the manipulated predator, suggesting that transient predators may be even more important than the residents. We suggest that adult abundances in this species were strongly influenced by the densities of different predators and the availability of preferred refuges. Received: 3 April 1997 / Accepted: 26 August 1997     

Predation risk assessment by olfactory and visual cues in a coral reef fish

Assessment of predation risk is vital for the success of an individual. Primary cues for the assessment include visual and olfactory stimuli, but the relative importance of these sources of information for risk assessment has seldom been assessed for marine fishes. This study examined the importance of visual and chemical cues in assessing risk for the star goby, Asterropteryx semipunctatus. Visual and chemical cue intensities were used that were indicative of a high threat situation. The behavioural response elicited by both the visual cues of a predator (the rock cod, Cephalopholis boenak) and the chemical alarm cues from conspecifics were similar in magnitude, with responses including a decrease in feeding strikes and moves. A bobbing behaviour was exhibited when the predator was visible and not when only exposed to the chemical alarm cue. When visual and chemical cues were presented together they yielded a stronger antipredator response than when gobies were exposed solely to conspecific alarm cues. This suggests additivity of risk assessment information at the levels of threat used, however, the goby’s response is also likely to depend on the environmental and social context of the predator–prey encounter. This study highlights the importance of chemical cues in the assessment of predation risk for a coral reef fish.     

How does shoreline development impact the recruitment patterns of coral reef fish juveniles (Moorea Island,French Polynesia)?

The study examined the effects of coastal embankment building on fish recruitment in three habitat types (beach-rock, white sand and muddy sand) in the near shore and fringing reef habitats of Moorea lagoon (French Polynesia). The results showed a positive relationship between the presence of embankments and the density and species richness of juvenile fish along the shoreline (whatever the habitat types). However, embankments deteriorated adjacent fringing reefs (decrease of live coral), which led to a decrease of fish density on beach-rock and white sand sites, and a decrease of fish species richness on muddy sand sites.     

Spatial structure of coral reef fish communities at Kudaka Island (Ryukyu Archipelago), Japan

The present study aimed to investigate the spatial structure of fish communities at juvenile and adult stages on coral reefs at Kudaka Island (Ryukyu Archipelago, Japan) and to relate spatial patterns in the structure of the fish communities to gradients in environmental variables. Diurnal visual censuses allowed us to record 2,602 juveniles belonging to 60 species and 1,543 adults belonging to 53 species from October to December 2005. The distribution of species highlighted that the juvenile community was organised into three distinct assemblages, rather than exhibiting gradual change in community structure along the cross-reef gradient. Correlations between spatial patterns of juvenile community and environmental variables revealed that the most significant factors explaining variation in community structure were coral rubble and coral slab. In contrast, the adult community was organised into one assemblage, and the most significant variation factors in community structure were depth, live coral in massive form, live coral in branched form, dead coral and sand. Overall, the present study showed that most juvenile and adult coral reef fish at Kudaka Island exhibited striking patterns in their distribution and depth and some biological factors (e.g., abundance of live coral, dead coral and coral rubble) might exert considerable influence on the distribution of fishes.     

Size-spectra as indicators of the effects of fishing on coral reef fish assemblages

The data requirements and resources needed to develop multispecies indicators of fishing impacts are often lacking and this is particularly true for coral reef fisheries. Size-spectra, relationships between abundance and body-size class, regardless of taxonomy, can be calculated from simple sizeabundance data. Both the slope and the mid-point height of the relationship can be compared at different fishing intensities. Here, we develop size-spectra for reef fish assemblages using body size- abundance data collected by underwater visual census in each of ten fishing grounds across a known gradient of fishing intensity in the Kadavu Island group, Fiji. Slopes of the size-spectra became steeper (F_9,69=3.20, p<0.01) and the height declined (F_9,69=15.78, p<0.001) with increasing fishing intensity. Regressions of numbers of individuals per size class across grounds were negative for all size classes, although the slope was almost zero for the smallest size class. Response to exploitation of each size class category was greatest for larger fish. Steepening of the slope with increasing fishing intensity largely resulted from reductions in the relative abundance of large fish and not from the ecological release of small fish following depletion of their predators. The slope and height of the size-spectrum appear to be good indicators of fishing effects on reef fish assemblages.     

The influence of habitat characteristics and conspecifics on attraction and survival of coral reef fish juveniles

In marine species with a pelagic larval stage, search behavior and selection of a suitable reef habitat can maximize the settlement success of recently settled juveniles and their subsequent performance (growth and survival of juveniles). Our objective was to test this hypothesis for a single target coral reef fish species (Chromis viridis) at Moorea Island. C. viridis settle on living coral colonies of Porites rus already populated with conspecifics. In the present study (conducted in experimental cages), we found that: 1) mortality rate of recently settled juveniles of C. viridis was lower in the settlement habitat (living coral colonies of P. rus) than in other habitats having physical structure different from those of P. rus colonies; 2) C. viridis juveniles preferentially colonized coral heads of P. rus with conspecifics present rather than uninhabited coral heads and they also preferentially colonized uninhabited coral heads rather than coral heads with heterospecifics; 3) mortality rate of C. viridis juveniles did not vary with the presence or absence of conspecifics or heterospecifics on P. rus colonies. Overall, the study allows us to highlight that site selection by juveniles for habitat containing conspecifics does not benefit their short term mortality rates, suggesting that in the short term at least, site selection has little importance.     

Parasites of recruiting coral reef fish larvae in New Caledonia

Recruiting coral reef fish larvae from 38 species and 19 families from New Caledonia were examined for parasites. We found 13 parasite species (Platyhelminthes: Monogenea, Cestoda and Trematoda) but no acanthocephalan, crustacean or nematode parasites. Over 23% of individual fish were infected. Didymozoid metacercariae were the most abundant parasites. We conclude that most of the parasites are pelagic species that become ‘lost’ once the fish larvae have recruited to the reef. Larval coral reef fish probably contribute little to the dispersal of the parasites of the adult fish so that parasite dispersal is more difficult than that of the fish themselves.     

Evidence of density-independent mortality in a settling coral reef damselfish, Chromis viridis

To know if the variation in the number of settling fish larvae can be dampened by density-dependent postsettlement mortality, we investigated the relationship between settler density and predator-induced mortality of a coral reef damselfish, Chromis viridis. Totals of 2, 3, 5, 8, 10, 12, 14, 16, 18, and 20 fish of 10 or 20 mm total length were released in experimental cages enclosing a coral head of Porites rus (to provide settlement habitat) and five predators. The results showed that the mortality rate of both 10- and 20-mm fish was density independent.     

Structure of Caribbean coral reef communities across a large gradient of fish biomass

The collapse of Caribbean coral reefs has been attributed in part to historic overfishing, but whether fish assemblages can recover and how such recovery might affect the benthic reef community has not been tested across appropriate scales. We surveyed the biomass of reef communities across a range in fish abundance from 14 to 593 g m⁻², a gradient exceeding that of any previously reported for coral reefs. Increased fish biomass was correlated with an increased proportion of apex predators, which were abundant only inside large marine reserves. Increased herbivorous fish biomass was correlated with a decrease in fleshy algal biomass but corals have not yet recovered.     

Indices for assessing coral reef fish biodiversity: the need for a change in habits

We present the first representative and quantified overview of the indices used worldwide for assessing the biodiversity of coral reef fishes. On this basis, we discuss the suitability and drawbacks of the indices most widely used in the assessment of coral fish biodiversity. An extensive and systematic survey of the literature focused on coral reef fish biodiversity was conducted from 1990 up to the present. We found that the multicomponent aspect of biodiversity, which is considered as a key feature of biodiversity for numerous terrestrial and marine ecosystems, has been poorly taken into account in coral reef fish studies. Species richness is still strongly dominant while other diversity components, such as functional diversity, are underestimated even when functional information is available. We also demonstrate that the reason for choosing particular indices is often unclear, mainly based on empirical rationales and/or the reproduction of widespread habits, but generally with no clear relevance with regard to the aims of the studies. As a result, the most widely used indices (species richness, Shannon, etc.) would appear to be poorly suited to meeting the main challenges facing the monitoring of coral reef fish biodiversity in the future. Our results clearly show that coral reef scientists should rather take advantage of the multicomponent aspect of biodiversity. To facilitate this approach, we propose general guidelines to serve as a basis for the selection of indices that provide complementary and relevant information for monitoring the response of coral reef fish biodiversity in the face of structuring factors (natural or anthropic). The aim of these guidelines was to achieve a better match between the properties of the selected indices and the context of each study (e.g. expected effect of the main structuring factors, nature of data available).     

Management implications of fish trap effectiveness in adjacent coral reef and gorgonian habitats

A combination of visual census and trap sampling in St. John, USVI indicated that traps performed better in gorgonian habitat than in adjacent coral reef habitat. Although most families were seen more commonly in coral habitat, they were caught more often in gorgonian areas. Traps probably fished more effectively in gorgonian habitats, especially for migrating species, because traps provided shelter in the relatively topographically uniform environment of gorgonian dominated habitats. Recently, trap fishermen on St. John have been moving effort away from traditionally fished nearshore coral reefs and into a variety of more homogeneous habitats such as gorgonian habitat. Consequently, exploitation rates of the already over-harvested reef fish resources may be increasing. Reef fish managers and marine reserve designers should consider limiting trap fishing in gorgonian habitats to slow the decline of reef fisheries.     

A dynamic model of group-size choice in the coral reef fish Dascyllus albisella

We developed a dynamic programming model of group size choicefor settling coral reef fish to help understand variabilityin observed group sizes. Rather than calculating optimal groupsize, we modeled optimal choice and calculated the acceptablegroup sizes that arose from this choice. In the model, settling individualsweigh the fitness value of settling in a group against the expectedfitness of searching another day and encountering other groups, choosingthe option with the higher value. Model results showed that individualssettling on any given day in the settling season have several acceptablegroup sizes in which they can settle. The range of acceptablegroup sizes also changes across the season. Early in the season,when there is still adequate time to grow, large groups (withhigher survival) have the highest fitness. Late in the season,when the ability to grow fast becomes more important, smallgroups, which convey fast growth rates (although riskier), havehigher fitness. Thus, according to our model, even when fishall make the same, simple decisions, a variety of outcomes arepossible, depending on the specific options encountered andtemporally changing ecological pressures. Even when all fishbehave optimally, initial variability in group sizes will persist.     

Aggressive mimicry in a coral reef fish: The prey's view

Since all forms of mimicry are based on perceptual deception, the sensory ecology of the intended receiver is of paramount importance to test the necessary precondition for mimicry to occur, that is, model‐mimic misidentification, and to gain insight in the origin and evolutionary trajectory of the signals. Here we test the potential for aggressive mimicry by a group of coral reef fishes, the color polymorphic Hypoplectrus hamlets, from the point of view of their most common prey, small epibenthic gobies and mysid shrimp. We build visual models based on the visual pigments and spatial resolution of the prey, the underwater light spectrum and color reflectances of putative models and their hamlet mimics. Our results are consistent with one mimic‐model relationship between the butter hamlet H. unicolor and its model the butterflyfish Chaetodon capistratus but do not support a second proposed mimic‐model pair between the black hamlet H. nigricans and the dusky damselfish Stegastes adustus. We discuss our results in the context of color morphs divergence in the Hypoplectrus species radiation and suggest that aggressive mimicry in H. unicolor might have originated in the context of protective (Batesian) mimicry by the hamlet from its fish predators rather than aggressive mimicry driven by its prey.     

Elevated carbon dioxide affects behavioural lateralization in a coral reef fish

Elevated carbon dioxide (CO(2)) has recently been shown to affect chemosensory and auditory behaviour, and activity levels of larval reef fishes, increasing their risk of predation. However, the mechanisms underlying these changes are unknown. Behavioural lateralization is an expression of brain functional asymmetries, and thus provides a unique test of the hypothesis that elevated CO(2) affects brain function in larval fishes. We tested the effect of near-future CO(2) concentrations (880 μatm) on behavioural lateralization in the reef fish, Neopomacentrus azysron. Individuals exposed to current-day or elevated CO(2) were observed in a detour test where they made repeated decisions about turning left or right. No preference for right or left turns was observed at the population level. However, individual control fish turned either left or right with greater frequency than expected by chance. Exposure to elevated-CO(2) disrupted individual lateralization, with values that were not different from a random expectation. These results provide compelling evidence that elevated CO(2) directly affects brain function in larval fishes. Given that lateralization enhances performance in a number of cognitive tasks and anti-predator behaviours, it is possible that a loss of lateralization could increase the vulnerability of larval fishes to predation in a future high-CO(2) ocean.     

Influence of depth on sex-specific energy allocation patterns in a tropical reef fish

The effect of depth on the distribution and sex-specific energy allocation patterns of a common coral reef fish, Chrysiptera rollandi (Pomacentridae), was investigated using depth-stratified collections over a broad depth range (5–39 m) and a translocation experiment. C. rollandi consistently selected rubble habitats at each depth, however abundance patterns did not reflect the availability of the preferred microhabitat suggesting a preference for depth as well as microhabitat. Reproductive investment (gonado-somatic index), energy stores (liver cell density and hepatocyte vacuolation), and overall body condition (hepato-somatic index and Fulton’s K) of female fish varied significantly among depths and among the three reefs sampled. Male conspecifics displayed no variation between depth or reef. Depth influenced growth dynamics, with faster initial growth rates and smaller mean asymptotic lengths with decreasing depth. In female fish, relative gonad weight and overall body condition (Fulton’s K and hepato-somatic index) were generally higher in shallower depths (≤10 m). Hepatic lipid storage was highest at the deepest sites sampled on each reef, whereas hepatic glycogen stores tended to decrease with depth. Depth was found to influence energy allocation dynamics in C. rollandi. While it is unclear what processes directly influenced the depth-related patterns in energy allocation, this study shows that individuals across a broad depth gradient are not all in the same physiological state and may contribute differentially to the population reproductive output. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.