Taking into account local practices and indigenous knowledge in an emergency conservation context in Madagascar

At the 5th World Parks Congress, held in Durban, South Africa in 2003, the President of Madagascar committed his government to tripling the country’s protected zones over the next 5 years. The announcement reflected a desire to combine rapid conservation efforts with sustainable development. Conservationists in Madagascar focused their attention on the endemic baobab tree, Adansonia grandidieri. This paper aims to identify the contradictions between the political emergency of the biodiversity conservation effort and local development needs. Eighty-three semi-structured interviews were conducted in two villages near the protected area of “Baobab Alley” in the Menabe region. Malagasy conservationists believed the area’s protected status would benefit the local economy through eco-tourism. However, the conservation actions undertaken there display limited understanding of local dynamics and conflict with farmers’ needs. To protect the baobabs, the government has prohibited rice cultivation without providing compensation. We show that the multifunctional baobab tree is integrated into an agroforestry system and protected by farmers. Based on these results, we address the issue of how to combine conservation and local development objectives through the involvement of farmers and the recognition of local knowledge in tree management. We also demonstrate that an emergency approach to conservation is not conducive to the successful integration of conservation and development.     

Use of indigenous knowledge for rapidly assessing trends in biodiversity: a case study from Chiapas, Mexico

In order to evaluate the usefulness of rapid surveys of indigenous knowledge for assessing trends in biodiversity, a case study was undertaken in two rural communities, Juznajab and Muquenal, in Chiapas, Mexico. This involved the use of a variety of rapid rural appraisal (RRA) and participatory rural appraisal (PRA) techniques, including semi-structured interviews, transect walks and participatory mapping. These approaches were used in conjunction with analysis of land use maps and aerial photographs to evaluate recent changes in vegetation cover and abundance of utilised species. In both communities, the extent of forest cover was considered by local people to have declined substantially in recent decades, with an annual decline in forest cover of 0.3% and 0.6% estimated by local people in Juznajab and Muquenal, respectively. Results from RRA indicated that this has been accompanied by significant declines in the abundance of useful species. In Juznajab 60% and 79%, and in Muquenal 96% and 85% of plants and animal species, respectively, were considered to have declined within living memory. These declines appear to result from over-utilization as well as habitat changes. For example, most of the tree species used for timber and the animal species used for meat were considered to have declined substantially in both communities. These results indicate that indigenous knowledge is potentially a valuable source of information about biodiversity trends, which could be assessed during Rapid Biodiversity Assessments and incorporated into the process of resource management by local communities. However, the contradictions recorded between assessments of vegetation change by local people and data obtained from other sources indicates the need for caution in the use of indigenous knowledge for this purpose.     

The Steve Biko affair: a case study in medical ethics

Steve Biko died in detention in South Africa in 1977. Critical ethical issues are raised both by the conduct of the doctors responsible for Biko's care and by the subsequent response of the medical profession as a whole. Because those issues are relevant to all healthcare professionals everywhere, the Biko affair provides a useful case study in medical ethics. We discuss the case in this article, describing how we use it in our teaching.     

Bioapatite to calcite,an unusual transformation seen in fossil bones affected by aquatic bioerosion

A characteristic aquatic bioerosion, which peripherally penetrates the bone cortex, has previously been described from the 7‐million‐year‐old Cerro de la Garita calcareous lakeshore site (Concud, Teruel, Spain). This site has also yielded body fossils that appear to have been partly or entirely replaced by a delicate, white ‘crumbly substance’ that disaggregates upon touch. High‐resolution image and chemical analyses of the ‘crumbly substance’, bioeroded and non‐altered fossils, fresh bones and the site sediment are here described. The ‘crumbly substance’ was identified as calcite formed by non‐cemented micro‐crystals, preserving identical micro‐tunnelling than was observed in bioeroded fossil bones. This paper reports these results in detail and discusses how the original bone bioapatite may have been transformed. Results of these analyses have led us to propose that micro‐organisms, peripherally boring the bone, could also have influenced the transformation of bone bioapatite to calcite under specific micro‐environmental conditions.     

Using indirect methods to constrain symbiotic nitrogen fixation rates: a case study from an Amazonian rain forest

Human activities have profoundly altered the global nitrogen (N) cycle. Increases in anthropogenic N have had multiple effects on the atmosphere, on terrestrial, freshwater and marine ecosystems, and even on human health. Unfortunately, methodological limitations challenge our ability to directly measure natural N inputs via biological N fixation (BNF)—the largest natural source of new N to ecosystems. This confounds efforts to quantify the extent of anthropogenic perturbation to the N cycle. To address this gap, we used a pair of indirect methods—analytical modeling and N balance—to generate independent estimates of BNF in a presumed hotspot of N fixation, a tropical rain forest site in central Rondônia in the Brazilian Amazon Basin. Our objectives were to attempt to constrain symbiotic N fixation rates in this site using indirect methods, and to assess strengths and weaknesses of this approach by looking for areas of convergence and disagreement between the estimates. This approach yielded two remarkably similar estimates of N fixation. However, when compared to a previously published bottom-up estimate, our analysis indicated much lower N inputs via symbiotic BNF in the Rondônia site than has been suggested for the tropics as a whole. This discrepancy may reflect errors associated with extrapolating bottom-up fluxes from plot-scale measures, those resulting from the indirect analyses, and/or the relatively low abundance of legumes at the Rondônia site. While indirect methods have some limitations, we suggest that until the technological challenges of directly measuring N fixation are overcome, integrated approaches that employ a combination of model-generated and empirically-derived data offer a promising way of constraining N inputs via BNF in natural ecosystems.     

Patterns of daily allocation of sleep periods: a case study in an Amazonian riverine community

Few works already carried out have examined the relative role of genetic and external factors on the determination of the rhythmicity of the human sleep/wake cycle. In order to make a preliminary approach in this field, we investigated the diversity of patterns of allocation of sleep periods among 29 families living at the Combu Island, a socioculturally very homogeneous human group of the Brazilian Amazon. The individuals were interviewed through a questionnaire designed by Horne and Ostberg (1976), with the language of the questions adjusted to the way-of-life of the riverine people. A large predominance of the morning type was observed (95.35%), what constitutes a strong deviation in relation to other populations studied, suggesting the occurrence of a masking effect. The individual scores presented a positive correlation with the age (r = 0.31; p less than 0.01), and a significant intersexual difference was also verified (t = 3.08; p less than 0.01). This intersex difference is explained, in part, by analyzing the socioeconomic patterns of the community. The offspring/parent regression of the individual scores indicated a low dependency between genitors and their direct descendents (p greater than 0.7), and the estimative of heritability obtained (0.14) is artificial, since the offspring/mother and offspring/midparent regression coefficients were negative. Statistically non-significant coefficients of correlation and/or regression showed a highly randomic populational distribution of scores for the Horne-Ostberg's test. Such findings suggest that the intensity of the masking over the sleep/wake cycle varies among human populations, and that the individual tendency towards morningness/eveningness is strongly related to sociocultural factors.     

Minimum sample sizes for population genomics: an empirical study from an Amazonian plant species

High‐throughput DNA sequencing facilitates the analysis of large portions of the genome in nonmodel organisms, ensuring high accuracy of population genetic parameters. However, empirical studies evaluating the appropriate sample size for these kinds of studies are still scarce. In this study, we use double‐digest restriction‐associated DNA sequencing (ddRADseq) to recover thousands of single nucleotide polymorphisms (SNPs) for two physically isolated populations of Amphirrhox longifolia (Violaceae), a nonmodel plant species for which no reference genome is available. We used resampling techniques to construct simulated populations with a random subset of individuals and SNPs to determine how many individuals and biallelic markers should be sampled for accurate estimates of intra‐ and interpopulation genetic diversity. We identified 3646 and 4900 polymorphic SNPs for the two populations of A. longifolia, respectively. Our simulations show that, overall, a sample size greater than eight individuals has little impact on estimates of genetic diversity within A. longifolia populations, when 1000 SNPs or higher are used. Our results also show that even at a very small sample size (i.e. two individuals), accurate estimates of F_ST can be obtained with a large number of SNPs (≥1500). These results highlight the potential of high‐throughput genomic sequencing approaches to address questions related to evolutionary biology in nonmodel organisms. Furthermore, our findings also provide insights into the optimization of sampling strategies in the era of population genomics.     

Consuming Grief: Compassionate Cannibalism in an Amazonian Society

Consuming Grief: Compassionate Cannibalism in an Amazonian Society. Beth A. Conklin. Austin: University of Texas Press, 2001. 317 pp.     

Genealogy reconstruction from short tandem repeat genotypes in an Amazonian population

We have reconstructed partial genealogies in a sample of 44 SW Amazonian Rondonian Surui, in which 45 dinucleotide short tandem repeat polymorphisms had previously been typed. The genotypes of 488 pairs of individuals having an age difference of 13 or greater were compared, and parentage was excluded if a pair failed to share an allele at more than one locus. In order to test the power of this method, we computed the expected distribution of the number of exclusionary loci for such pairs of unrelated individuals, as well as that for individuals with different degrees of relatedness, and compared it to the observed distribution. We estimated that the pairs compared contained ∼20% of individual pairs with a first-cousin relation or closer. A total of 25 pairs were identified as possible parent-child. In three instances, we could identify two or more children having a common parent; we computed a relatedness coefficient in order to establish whether the children were full or half sibs. The genealogies inferred show that instances of polygyny and polyandry (or, alternatively, serial mating), in addition to apparent monogamy, can be found among the Surui. The Surui sample can be used as a model for paleoanthropological populations, in which the determination of relatedness can provide further insights into the social structure of past populations. We estimate that, depending on the history of the populations and the degree of inbreeding, 10–20 highly informative nuclear loci should be typed in order to infer genealogies with acceptable confidence. Am J Phys Anthropol 108:137–146, 1999. © 1998 Wiley-Liss, Inc.     

Competition between invasive and indigenous species: an insular case study of subterranean termites

An important requirement for the management of invasive species is to identify the biological and ecological factors that influence the ability of such species to become established and spread within a new environment. Although competition is one of the key interactions determining the coexistence of species and exclusion, few studies directly examine the mechanism of competitive interactions within invasive communities. This study focused on putative competition in a social insect invader, R. flavipes, an American termite introduced into France, and an indigenous European termite, R. grassei. We first characterized and mapped a zone of sympatry between these two species. We then evaluated the degree of direct and indirect competition by comparing several life-history traits: behavioral aggression, chemical recognition and dispersion modes. Interspecific competition revealed that R. flavipes was dominant over R. grassei. Intraspecific competition was not found in R. flavipes while it appeared in varying degrees in R. grassei. These findings seemed to be correlated with the remarkable chemical homogeneity found in R. flavipes in comparison with R. grassei. Genetic analyses revealed that R. flavipes foraged over a greater distance than R. grassei colonies and might suggest a difference in the capacity to produce secondary reproductives. These findings suggest that R. flavipes has a significant advantage owing to competitive asymmetry that may enable the species to become dominant. The interspecific superiority, lack of intraspecific aggression and large extensive colonies, seem to be some of the reasons for its invasive success.     

I Foresee My Life: The Ritual Performance of Autobiography in an Amazonian Community

I Foresee My Life: The Ritual Performance of Autobiography in an Amazonian Community . Suzanne Oakdale. Lincoln: University of Nebraska Press, 2006. 206 pp.     

The effect of agricultural practices on the development of indigenous arbuscular mycorrhizal fungi. I. Field studies in an Indonesian ultisol

Two pre-established agricultural field trials were assessed for the abundance of arbuscular mycorrhizal fungi (AMF) in the soil (density of spores, species richness and lengths of extra-radical mycelium [ERM]) in association with one of three tropical plant species (Gliricidia sepium, Peltophorum dasyrachis and Zea mays). The trials were managed by one of three agricultural practices: soil disturbance in a monoculture system, a root barrier to prevent interactions between plants in an agroforestry system or the addition of organic matter (OM) in an agroforestry and a monoculture system. The lengths of ERM of AMF in the soil were greater in the agroforestry system than the monoculture system. These were greater when a root barrier was present, but decreased when OM was added. Soil disturbance reduced the density of spores, species richness and the lengths of ERM of AMF compared with the undisturbed soil. This work indicates that agricultural trials may provide a useful tool to monitor the abundance of AMF in the field. Clearly, there is potential to increase the abundance of AMF, from different genera, in the soil through the management of agricultural practices. The significance of the abundance of AMF for subsequent benefits to plant growth and development and ultimately the sustainability of tropical agro-ecosystems are discussed. This revised version was published online in August 2006 with corrections to the Cover Date.     

The house gardens of Santa Rosa: Diversity and variability in an Amazonian agricultural system

Most research on house gardens suggests that this agricultural production type reaches its greatest development in areas of high population density. Gardens in low density areas such as the Amazon Basin have, to date, attracted little attention. A sample of house gardens in a ribereno village of the Peruvian Amazon is described and their great species diversity and variability in size and composition are discussed. The processes by which gardens in the village evolve and change are outlined. The study indicates that many young people of the village have a continuing interest in maintaining complex house gardens. More research on Amazonian house gardens is urged.     

The potential for harvesting fruits in tropical rainforests: new data from Amazonian Peru

New data shows that edible fruit and nut production in Amazonian forests is substantially lower than most conservationists assume. Direct measures of production in Amazonian Peru show that two terra firma forest types produced significantly less edible fruit than an alluvial soil forest. Swamp forest produced more edible fruit than any other forest type measured. Palms produce 60% of edible fruit productivity, averaged over three forest types, but the most preferred palm fruits are difficult to harvest because they are borne too high for easy access by collectors. Forest fruit collection in Amazonia is less productive in the short-term than all other food-producing activities except for hunting and cattle ranching. Technological, social and political changes are essential so that sustainable but intrinsically low-yielding extractive activities like fruit collecting become more attractive to Amazonians.     

Breakdown of green and senescent leaves in Amazonian streams: a case study

Limnology - Allochthonous organic matter in low-order streams is, in general, mainly composed of senescent leaves. However, in tropical streams green leaves can represent an important source of...     

Riethia manauara n. sp., an Amazonian Chironomid (Diptera: Chironomidae) from Brazil

One new species of Riethia Kieffer, Riethia manauara n. sp., is described and figured as male, pupa and larva. The generic diagnosis for pupae and larvae are emended. The specimens were collected from water systems in the Amazon Rainforest in northern Brazil.     

Three fishes in one: cryptic species in an Amazonian floodplain forest specialist

Accurately describing biodiversity in tropical regions such as Amazonia is difficult because of insufficient morphological inventories and the lack of studies on the distribution of genetic diversity. Aquatic organisms from Amazonian flooded forests are generally expected to move laterally along the forests during the annual inundation cycle, a behaviour that should promote admixture of populations and reduce within‐drainage speciation. We used an unprecedented fine‐scale sampling effort and multiple DNA markers to quantify region‐wide population differentiation in an Amazonian floodplain forest specialist, the black‐wing hatchet fish Carnegiella marthae ( Myers, 1927 ). Our study revealed three previously unsuspected and ancient cryptic species of black‐wing hatchet fish in the Rio Negro floodplain (RNF), in central Amazonia. Two species produce occasional first‐generation hybrids. The third and rarer species, although found in extreme sympatry with another species, appears to be reproductively isolated, and also differs in external morphology and dentition. Our findings have important implications for guiding conservation management because C. marthae is harvested commercially in the RNF ornamental fishery. They also suggest that the diversity of Amazonian ichthyofauna is vastly underestimated, including that found in landscapes lacking contemporary barriers to account for population divergence and speciation. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 102 , 391–403.