The roles of carbonic anhydrases in photosynthetic CO2 concentrating mechanisms

Cyanobacteria, algae, aquatic angiosperms and higher plants have all developed their own unique versions of photosynthetic CO₂ concentrating mechanisms (CCMs) to aid Rubisco in efficient CO₂ capture. An important aspect of all CCMs is the critical roles that the specialised location and function that various carbonic anhydrase enzymes play in the overall process, participating the interconversion of CO₂ and HCO₃ ⁻ species both inside and outside the cell. This review examines what we currently understand about the nature of the carbonic anhydrase enzymes, their localisation and roles in the various CCMs that have been studied in detail. This revised version was published online in August 2006 with corrections to the Cover Date.     

Massive light-dependent cycling of inorganic carbon between oxygenic photosynthetic microorganisms and their surroundings

Membrane inlet mass spectrometry indicated massive light-dependent cycling of inorganic carbon between the medium and the cells of various phytoplankton species representing the main groups of aquatic primary producers. These included diatoms, symbiotic and free living dinoflagellates, a coccolithophorid, a green alga and filamentous and single cell cyanobacteria. These organisms could maintain an ambient CO₂ concentration substantially above or below that expected at chemical equilibrium with HCO₃ ⁻. The coccolithophorid Emiliania huxleyishifted from net CO₂ uptake to net CO₂ efflux with rising light intensity. Differing responses of CO₂ uptake and CO₂ fixation to changing light intensity supported the notion that these two processes are not compulsorily linked. Simultaneous measurements of CO₂ and O₂ exchange and of the fluorescence parameters in Synechococcus sp. strain PCC 7942, showed that CO₂ uptake can serve as a sensitive probe of the energy status of the photosynthetic reaction centers. However, during transitions in light intensity, changes in CO₂ uptake did not accord with those expected from fluorescence change. Quantification of the net fluxes of CO₂, HCO₃ ⁻ and of photosynthesis at steady-state revealed that substantial HCO₃ ⁻ efflux accompanied CO₂ uptake and fixation in the case of `CO<sub>2</sub> users'. On the other hand, `HCO₃ ⁻ users' were characterized by a rate of net CO₂ uptake below that of CO₂ fixation. The results support the notion that entities associated with the CCM function not only in raising the CO₂ concentration at the site of Rubisco; they may also serve as a means of diminishing photodynamic damage by dissipating excess light energy. This revised version was published online in August 2006 with corrections to the Cover Date.     

Inorganic carbon acquisition by eukaryotic algae: four current questions

The phylogenetically and morphologically diverse eukaryotic algae are typically oxygenic photolithotrophs. They have a diversity of incompletely understood mechanisms of inorganic carbon acquisition: this article reviews four areas where investigations continue. The first topic is diffusive CO₂ entry. Most eukaryotic algae, like all cyanobacteria, have inorganic carbon concentrating mechanisms (CCMs). The ancestral condition was presumably the absence of a CCM, i.e. diffusive CO₂ entry, as found in a small minority of eukaryotic algae today; however, it is likely that, as is found in several cases, this condition is due to a loss of a CCM. There are a number of algae which are in various respects intermediate between diffusive CO₂ entry and occurrence of a CCM: further study is needed on this aspect. A second topic is the nature of cyanelles and their role in inorganic carbon assimilation. The cyanelles (plastids) of the euglyphid amoeba Paulinella have been acquired relatively recently by endosymbiosis with genetic integration of an α-cyanobacterium with a Form 1A Rubisco. The α-carboxysomes in the cyanelles are presumably involved in a CCM, but further investigation is needed.Also called cyanelles are the plastids of glaucocystophycean algae, but is it now clear that these were derived from the β-cyanobacterial ancestor of all plastids other than that of Paulinella. The resemblances of the central body of the cyanelles of glaucocystophycean algae to carboxysomes may not reflect derivation from cyanobacterial β-carboxysomes; although it is clear that these algae have CCMs but these are now well characterized. The other two topics concern CCMs in other eukaryotic algae; these CCMs arose polyphyletically and independently of the cyanobacterial CCMs. It is generally believed that eukaryotic algal, like cyanobacterial, CCMs are based on active transport of an inorganic carbon species and/or protons, and they have C₃ biochemistry. This is the case for the organism considered as the third topic, i.e. Chlamydomonas reinhardtii, the eukaryotic alga with the best understood CCM. This CCM involves HCO₃ ^? conversion to CO₂ in the thylakoid lumen so the external inorganic carbon must cross four membranes in series with a final CO₂ effux from the thylakoid. More remains to be investigated about this CCM. The final topic is that of the occurrence of C₄-like metabolism in the CCMs of marine diatoms. Different conclusions have been reached depending on the organism investigated and the techniques used, and several aspects require further study.     

CO2‐concentrating mechanisms in three southern hemisphere strains of Emiliania huxleyi

Rising global CO₂ is changing the carbonate chemistry of seawater, which is expected to influence the way phytoplankton acquire inorganic carbon. All phytoplankton rely on ribulose‐bisphosphate carboxylase oxygenase (RUBISCO) for assimilation of inorganic carbon in photosynthesis, but this enzyme is inefficient at present day CO₂ levels. Many algae have developed a range of energy demanding mechanisms, referred to as carbon concentrating mechanisms (CCMs), which increase the efficiency of carbon acquisition. We investigated CCM activity in three southern hemisphere strains of the coccolithophorid Emiliania huxleyi W. W. Hay & H. P. Mohler. Both calcifying and non‐calcifying strains showed strong CCM activity, with HCO₃^? as a preferred source of photosynthetic carbon in the non‐calcifying strain, but a higher preference for CO₂ in the calcifying strains. All three strains were characterized by the presence of pyrenoids, external carbonic anhydrase (CA) and high affinity for CO₂ in photosynthesis, indicative of active CCMs. We postulate that under higher CO₂ levels cocco‐lithophorids will be able to down‐regulate their CCMs, and re‐direct some of the metabolic energy to processes such as calcification. Due to the expected rise in CO₂ levels, photosynthesis in calcifying strains is expected to benefit most, due to their use of CO₂ for carbon uptake. The non‐calcifying strain, on the other hand, will experience only a 10% increase in HCO₃^?, thus making it less responsive to changes in carbonate chemistry of water.     

Characterisation of CO2 and HCO3 − uptake in the cyanobacterium Synechocystis sp. PCC6803

The availability of a complete genome database for the cyanobacterium Synechocystissp. PCC6803 (glucose-tolerant strain) has raised expectations that this organism would become a reference strain for work aimed at understanding the CO₂-concentrating mechanism (CCM) in cyanobacteria. However, the amount of physiological data available has been relatively limited. In this report we provide data on the relative contributions of net HCO₃ ⁻ uptake and CO₂ uptake under steady state photosynthetic conditions. Cells were compared after growth at high CO₂ (2% v/v in air) or limiting CO₂ conditions (20 ppm CO₂). Synechocystishas a very high dependence on net HCO₃ ⁻ uptake at low to medium concentrations of inorganic carbon (Ci). At high Ci concentrations net CO₂ uptake became more important but did not contribute more than 40% to the rate of photosynthetic O₂ evolution. The data also confirm that high Ci cells of Synechocystissp. PCC6803 possess a strong capacity for net HCO₃ ⁻ uptake under steady state photosynthetic conditions. Time course experiments show that induction of maximal Ci uptake capacity on a shift from high CO₂ to low CO₂ conditions was near completion by four hours. By contrast, relaxation of the induced state on return of cells to high CO₂, takes in excess of 230 h. Experiments were conducted to determine if Synechocystissp. PCC6803 is able to exhibit a `fast induction' response under severe Ci limitation and whether glucose was capable of causing a rapid inactivation in Ci uptake capacity. Clear evidence for either response was not found. This revised version was published online in August 2006 with corrections to the Cover Date.     

Historical perspective on microalgal and cyanobacterial acclimation to low- and extremely high-CO2 conditions

Reports in the 1970s from several laboratories revealed that the affinity of photosynthetic machinery for dissolved inorganic carbon (DIC) was greatly increased when unicellular green microalgae were transferred from high to low-CO₂ conditions. This increase was due to the induction of carbonic anhydrase (CA) and the active transport of CO₂ and/or HCO₃ ⁻ which increased the internal DIC concentration. The feature is referred to as the `CO₂-concentrating mechanism (CCM)'. It was revealed that CA facilitates the supply of DIC from outside to inside the algal cells. It was also found that the active species of DIC absorbed by the algal cells and chloroplasts were CO₂ and/or HCO₃ ⁻, depending on the species. In the 1990s, gene technology started to throw light on the molecular aspects of CCM and identified the genes involved. The identification of the active HCO₃ ⁻ transporter, of the molecules functioning for the energization of cyanobacteria and of CAs with different cellular localizations in eukaryotes are examples of such successes. The first X-ray structural analysis of CA in a photosynthetic organism was carried out with a red alga. The results showed that the red alga possessed a homodimeric β-type of CA composed of two internally repeating structures. An increase in the CO₂ concentration to several percent results in the loss of CCM and any further increase is often disadvantageous to cellular growth. It has recently been found that some microalgae and cyanobacteria can grow rapidly even under CO₂ concentrations higher than 40%. Studies on the mechanism underlying the resistance to extremely high CO₂ concentrations have indicated that only algae that can adopt the state transition in favor of PS I could adapt to and survive under such conditions. It was concluded that extra ATP produced by enhanced PS I cyclic electron flow is used as an energy source of H⁺-transport in extremely high-CO₂ conditions. This same state transition has also been observed when high-CO₂ cells were transferred to low CO₂ conditions, indicating that ATP produced by cyclic electron transfer was necessary to accumulate DIC in low-CO₂ conditions. This revised version was published online in August 2006 with corrections to the Cover Date.     

A CO2-Flux Mechanism Operating via pH-Polarity in Hydrilla Verticillata Leaves With C3 and C4 Photosynthesis

The aquatic angiosperm Hydrilla verticillata lacks Kranz anatomy, but has an inducible, C₄-based, CO₂ concentrating mechanism (CCM) that concentrates CO₂ in the chloroplasts. Both C₃ and C₄ Hydrilla leaves showed light-dependent pH polarity that was suppressed by high dissolved inorganic carbon (DIC). At low DIC (0.25 mol m⁻³), pH values in the unstirred water layer on the abaxial and adaxial sides of the leaf were 4.2 and10.3, respectively. Abaxial apoplastic acidification served as a CO₂ flux mechanism (CFM), making HCO₃ ⁻ available for photosynthesis by conversion to CO₂. DIC at 10 mol m⁻³ completely suppressed acidification and alkalization. The data, along with previous results, indicated that inhibition was specific to DIC, and not a buffer effect. Acidification and alkalization did not necessarily show 1:1 stoichiometry; their kinetics for the apolar induction phase differed, and alkalization was less inhibited by 2.5 mol m⁻³ DIC. At low irradiance (50 μmol photons m⁻² s⁻¹), where CCM activity in C₄ leaves is minimized, both leaf types had similar DIC inhibition of pH polarity. However, as irradiance increased, DIC inhibition of C₃ leaves decreased. In C₄ leaves the CFM and CCM seemed to compete for photosynthetic ATP and/or reducing power. The CFM may require less, as at low irradiance it still operated maximally, if [DIC] was low. Iodoacetamide (IA), which inhibits CO₂ fixation in Hydrilla, also suppressed acidification and alkalization, especially in C₄ leaves. IA does not inhibit the C₄ CCM, which suggests that the CFM and CCM can operate independently. It has been hypothesized that irradiance and DIC regulate pH polarity by altering the chloroplastic [DIC], which effects the chloroplast redox state and subsequently redox regulation of a plasma-membrane H⁺-ATPase. The results lend partial support to a down-regulatory role for high chloroplastic [DIC], but do not exclude other sites of DIC action. IA inhibition of pH polarity seems inconsistent with the chloroplast NADPH/NADP⁺ ratio being the redox transducer. The possibility that malate and oxaloacetate shuttling plays a role in CFM regulation requires further investigation. This revised version was published online in June 2006 with corrections to the Cover Date.     

Impacts of increased atmospheric CO<Subscript>2</Subscript> concentration on photosynthesis and growth of micro- and macro-algae

Marine photosynthesis drives the oceanic biological CO₂ pump to absorb CO₂ from the atmosphere, which sinks more than one third of the industry-originated CO₂ into the ocean. The increasing atmospheric CO₂ and subsequent rise of pCO₂ in seawater, which alters the carbonate system and related chemical reactions and results in lower pH and higher HCO₃ ⁻ concentration, affect photosynthetic CO₂ fixation processes of phytoplanktonic and macroalgal species in direct and/or indirect ways. Although many unicellular and multicellular species can operate CO₂-concentrating mechanisms (CCMs) to utilize the large HCO₃ ⁻ pool in seawater, enriched CO₂ up to several times the present atmospheric level has been shown to enhance photosynthesis and growth of both phytoplanktonic and macro-species that have less capacity of CCMs. Even for species that operate active CCMs and those whose photosynthesis is not limited by CO₂ in seawater, increased CO₂ levels can down-regulate their CCMs and therefore enhance their growth under light-limiting conditions (at higher CO₂ levels, less light energy is required to drive CCM). Altered physiological performances under high-CO₂ conditions may cause genetic alteration in view of adaptation over long time scale. Marine algae may adapt to a high CO₂ oceanic environment so that the evolved communities in future are likely to be genetically different from the contemporary communities. However, most of the previous studies have been carried out under indoor conditions without considering the acidifying effects on seawater by increased CO₂ and other interacting environmental factors, and little has been documented so far to explain how physiology of marine primary producers performs in a high-CO₂ and low-pH ocean.     

Energy crosstalk between photosynthesis and the algal CO2-concentrating mechanisms

Microalgal photosynthesis is responsible for nearly half of the CO₂ annually captured by Earth’s ecosystems. In aquatic environments where the CO₂ availability is low, the CO₂-fixing efficiency of microalgae greatly relies on mechanisms – called CO_2-concentrating mechanisms (CCMs) – for concentrating CO₂ at the catalytic site of the CO₂-fixing enzyme ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco). While the transport of inorganic carbon (C_i) across membrane bilayers against a concentration gradient consumes part of the chemical energy generated by photosynthesis, the bioenergetics and cellular mechanisms involved are only beginning to be elucidated. Here, we review the current knowledge relating to the energy requirement of CCMs in the light of recent advances in photosynthesis regulatory mechanisms and the spatial organization of CCM components.     

External HCO3 − dehydration maintained by acid zones in the plasma membrane is an important component of the photosynthetic carbon uptake in Ruppia cirrhosa

Ruppia cirrhosa, a temperate seagrass growing in brackish water, featured a high capacity for HCO₃ ⁻ utilisation, which could operate over a wide pH range (from 7.5 up to 9.5) with maintained efficiency. Tris buffer inhibited this means of HCO₃ ⁻ utilisation in a competitive manner, while addition of acetazolamide, an inhibitor of extracellular carbonic anhydrase activity, caused a 40–50% inhibition. A mechanism involving periplasmic carbonic anhydrase-catalysed HCO₃ ⁻ dehydration in acid zones, followed by a (probably diffusive) transport of the formed CO₂ across the plasma membrane was thus, at least partly, responsible for the HCO₃ ⁻ utilisation. This mechanism, which comprises a CO₂-concentrating mechanism (CCM) associated with the plasma membrane, is thus shown for the first time in an aquatic angiosperm. Additional mechanisms involved in the Tris-sensitive HCO₃ ⁻ utilisation could be direct HCO₃ ⁻ uptake (e.g., in an H⁺/HCO₃ ⁻symport) or (more likely) non-catalysed HCO₃ ⁻ dehydration in the acid zones. Based on these results, and on earlier investigations on Zostera marina, a general model for analysis of HCO₃ ⁻ utilisation mechanisms of seagrasses is suggested. In this model, three `systems' for HCO₃ ⁻ utilisation are defined which are characterised (and can to some extent be quantified) by their capability to operate at high pH in combination with their response to acetazolamide and Tris. Some consequences of the fact that HCO₃ ⁻ utilisation and osmoregulation probably depend on the same energy source (ATP via H⁺-ATPase in the plasma membrane) are discussed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Stability and activity of rubisco in chestnut plantlets transferred to <Emphasis Type="Italic">ex vitro</Emphasis> conditions under elevated CO<Subscript>2</Subscript>

Summary Heterotrophic plantlets obtained by in vitro propagation are biochemically different compared to autotrophic plantlets. When heterotrophic plantlets are transferred to ex vitro conditions, higher irradiance levels are generally applied. Irradiance levels higher than those used in vitro lead to oxidative stress symptoms, that can be counteracted by CO₂ concentrations above normal. We analyzed the stability and activity of Rubisco and leaf-soluble sugars and starch contents in chestnut plantlets transferred from in vitro to ex vitro conditions under four treatments obtained by associating two irradiances of 150 (low light, LL) and 300 (high light, HL) μmolm⁻²s⁻¹, respectively three and six times in vitro irradiance, with two CO₂ levels of 350 (low CO₂, LCO₂) and 700 (high CO₂, HCO₂) μll⁻¹. In in vitro plantlets it was possible to immunodetect apparent products of degradation of Rubisco large subunit (LSU). In ex vitro plantlets, these degradation products were no longer dtected except under LL associated with LCO₂. The decrease in soluble sugars and starch in plantlets under HL HCO₂ gave an indication of a faster acquisition of autotrophic characteristics. However, under the same treatment, a down-regulation of Rubisco activity was observed. From the results taken as a whole, two aspects seem to be confirmed: HL HCO₂ is more efficient in inducing an autotrophic behavior in chestnut ex vitro plantlets; actively growing systems as ex vitro plantlets reflect the down-regulation of Rubisco by HCO₂ without accumulation of carbohydrates.     

New horizons for building pyrenoid-based CO2-concentrating mechanisms in plants to improve yields

Many photosynthetic species have evolved CO₂-concentrating mechanisms (CCMs) to improve the efficiency of CO₂ assimilation by Rubisco and reduce the negative impacts of photorespiration. However, the majority of plants (i.e. C3 plants) lack an active CCM. Thus, engineering a functional heterologous CCM into important C3 crops, such as rice (Oryza sativa) and wheat (Triticum aestivum), has become a key strategic ambition to enhance yield potential. Here, we review recent advances in our understanding of the pyrenoid-based CCM in the model green alga Chlamydomonas reinhardtii and engineering progress in C3 plants. We also discuss recent modeling work that has provided insights into the potential advantages of Rubisco condensation within the pyrenoid and the energetic costs of the Chlamydomonas CCM, which, together, will help to better guide future engineering approaches. Key findings include the potential benefits of Rubisco condensation for carboxylation efficiency and the need for a diffusional barrier around the pyrenoid matrix. We discuss a minimal set of components for the CCM to function and that active bicarbonate import into the chloroplast stroma may not be necessary for a functional pyrenoid-based CCM in planta. Thus, the roadmap for building a pyrenoid-based CCM into plant chloroplasts to enhance the efficiency of photosynthesis now appears clearer with new challenges and opportunities.

Research on pyrenoid formation has led to key advances toward engineering an algal CO₂-concentrating mechanism into C3 land plants, and a recent model predicts an optimized pathway for future work.     

Biochemical characterization of the δ-carbonic anhydrase from the marine diatom Thalassiosira weissflogii,TweCA

Abstract

Diatom genome sequences clearly reveal the presence of different systems for HCO₃^? uptake. Carbon-concentrating mechanisms (CCM) based on HCO₃^? transport and a plastid-localized carbonic anhydrase (CA, EC 4.2.1.1) appear to be more probable than the others because CAs have been identified in the genome of many diatoms. CAs are key enzymes involved in the acquisition of inorganic carbon for photosynthesis in phytoplankton, as they catalyze efficiently the interconversion between carbon dioxide and bicarbonate. Five genetically distinct classes of CAs exist, α-, β-, γ-, δ- and ζ and all of them are metalloenzymes. Recently we investigated for the first time the catalytic activity and inhibition of the δ-class CA from the marine diatom Thalassiosira weissflogii, named TweCA. This enzyme is an efficient catalyst for the CO₂ hydration and its inhibition profile with sulfonamide/sulfamate and anions have also been investigated. Here, we report the detailed biochemical characterization and chemico-physical properties of the δ-CA of T. weissflogii. The δ-CA encoding gene was cloned and expressed in Artic Express cells and the recombinant protein purified to homogeneity. Interesting to note that TweCA has no intrinsic esterase activity with 4-nitrophenyl acetate (pNpA) as substrate although the phylogenetic analysis showed that δ-CAs are closer to the α-CAs than to the other classes of such enzymes.     

Growth, photosynthetic properties and Rubisco activities and amounts of marine macroalgae grown under current and elevated seawater CO2 concentrations

Growth rates, photosynthetic responses and the activity, amount and CO₂ affinity of ribulose‐1,5‐bisphosphate carboxylase/oxygenase (Rubisco) were determined for common marine macroalgae grown in seawater (containing 14.5 ± 2.1 µM CO₂) or CO₂‐enriched seawater (averaging 52.8 ± 19.2 µM CO₂). The algae were grown in 40 L fiberglass tanks (outdoor) for 4–15 weeks and in a field experimental setup for 5 days. Growth rates of the species studied (representing the three major divisions, i.e. Chlorophyta, Rhodophyta and Phaeophyta) were generally not significantly affected by the increased CO₂ concentrations in the seawater medium. Rubisco characteristics of algae cultivated in CO₂‐enriched seawater were similar to those of algae grown in nonenriched seawater. The lack of response of photosynthetic traits in these aquatic plants is likely to be because of the presence of CO₂ concentrating mechanisms (CCMs) which rely on HCO₃^– utilization, the inorganic carbon (Ci) form that dominates the total Ci pool available in seawater. Significant changes on the productivity of these particular marine algae species would not be anticipated when facing future increasing atmospheric CO₂ levels.     

The effect of pCO2 on carbon acquisition and intracellular assimilation in four marine diatoms

The effect of pCO₂ on carbon acquisition and intracellular assimilation was investigated in the three bloom-forming diatom species, Eucampia zodiacus (Ehrenberg), Skeletonema costatum (Greville) Cleve, Thalassionema nitzschioides (Grunow) Mereschkowsky and the non-bloom-forming Thalassiosira pseudonana (Hust.) Hasle and Heimdal. In vivo activities of carbonic anhydrase (CA), photosynthetic O₂ evolution, CO₂ and HCO₃⁻ uptake rates were measured by membrane-inlet mass spectrometry (MIMS) in cells acclimated to pCO₂ levels of 370 and 800 μatm. To investigate whether the cells operate a C₄-like pathway, activities of ribulose-1,5-bisphosphate carboxylase (RubisCO) and phosphoenolpyruvate carboxylase (PEPC) were measured at the mentioned pCO₂ levels and a lower pCO₂ level of 50 μatm. In the bloom-forming species, extracellular CA activities strongly increased with decreasing CO₂ supply while constantly low activities were obtained for T. pseudonana. Half-saturation concentrations (K_1/2) for photosynthetic O₂ evolution decreased with decreasing CO₂ supply in the two bloom-forming species S. costatum and T. nitzschioides, but not in T. pseudonana and E. zodiacus. With the exception of S. costatum, maximum rates (V_max) of photosynthesis remained constant in all investigated diatom species. Independent of the pCO₂ level, PEPC activities were significantly lower than those for RubisCO, averaging generally less than 3%. All examined diatom species operate highly efficient CCMs under ambient and high pCO₂, but differ strongly in the degree of regulation of individual components of the CCM such as C_i uptake kinetics and extracellular CA activities. The present data do not suggest C₄ metabolism in the investigated species.     

Physiological Responses of a Model Marine Diatom to Fast pH Changes: Special Implications of Coastal Water Acidification

Diatoms and other phytoplankton in coastal waters experience rapid pH changes in milieu due to high biological activities and/or upwelled CO₂-rich waters. While CO₂ concentrating mechanisms (CCMs) are employed by all diatoms tested to counter low CO₂ availability in seawater, little is known how this mechanism responds to fast pH changes. In the present study, the model diatom Thalassiosira pseudonana was acclimated for 20 generations to low pH (7.81) at an elevated CO₂ of 1000 μatm (HC) or to high pH (8.18) at ambient CO₂ levels of 390 μatm (LC), then its physiological characteristics were investigated as cells were shifted from HC to LC or vice versa. The maximal electron transport rate (ETR_max) in the HC-acclimated cells was immediately reduced by decreased CO₂ availability, showing much lower values compared to that of the LC-acclimated cells. However, the cells showed a high capacity to regain their photochemical performance regardless of the growth CO₂ levels, with their ETR_max values recovering to initial levels in about 100 min. This result indicates that this diatom might modulate its CCMs quickly to maintain a steady state supply of CO₂, which is required for sustaining photosynthesis. In addition, active uptake of CO₂ could play a fundamental role during the induction of CCMs under CO₂ limitation, since the cells maintained high ETR even when both intracellular and periplasmic carbonic anhydrases were inhibited. It is concluded that efficient regulation of the CCM is one of the key strategies for diatoms to survive in fast changing pH environment, e.g. for the tested species, which is a dominant species in coastal waters where highly fluctuating pH is observed.     

Effects of Carbon Dioxide Enrichment and Nitrogen Addition on Inorganic Carbon Leaching in Subtropical Model Forest Ecosystems

Soil mineral weathering may serve as a sink for atmospheric carbon dioxide (CO₂). Increased weathering of soil minerals induced by elevated CO₂ concentration has been reported previously in temperate areas. However, this has not been well documented for the tropics and subtropics. We used model forest ecosystems in open-top chambers to study the effects of CO₂ enrichment alone and together with nitrogen (N) addition on inorganic carbon (C) losses in the leachates. Three years of exposure to an atmospheric CO₂ concentration of 700 ppm resulted in increased annual inorganic C export through leaching below the 70 cm soil profile. Compared to the control without any CO₂ and N treatments, net biocarbonate C (HCO₃ ⁻-C) loss increased by 42%, 74%, and 81% in the high CO₂ concentration treatment in 2006, 2007, and 2008, respectively. Increased inorganic C export following the exposure to the elevated CO₂ was related to both increased inorganic C concentrations in the leaching water and the greater amount of leaching water. Net annual inorganic C (HCO₃ ⁻-C and carbonate C: CO₃ ²⁻-C) loss via the leaching water in the high CO₂ concentration chambers reached 48.0, 49.5, and 114.0 kg ha⁻¹ y⁻¹ in 2006, 2007, and 2008, respectively, compared with 33.8, 28.4, and 62.8 kg ha⁻¹ y⁻¹ in the control chambers in the corresponding years. The N addition showed a negative effect on the mineral weathering. The decreased inorganic C concentration in the leaching water and the decreased leaching water amount induced by the high N treatment were the results of the adverse effect. Our results suggest that tropical forest soil systems may be able to compensate for a small part of the atmospheric CO₂ increase through the accelerated processing of CO₂ into HCO₃ ⁻-C during soil mineral weathering, which might be transported in part into ground water or oceans on geological timescales.     

The response of Synechococcus PCC7942 (Cyanophyta) to changes in CO2 supply in relation to the acclimation of the CO2-concentrating mechanism. I: physiological study

Distinct types of carboxysomes were distinguished in Synechococcus PCC 7942: electron-clear, electron-intermediate, carboxysomes with internal electron-clear areas, typical electron-dense and bar-shaped carboxysomes. Immunogold location with antibodies against the Rubisco large subunit showed specific label in all carboxysomes. The positive correlation between electron-density, the density of immunogold label, and the percentage of labeled structures within each type support a model of carboxysome biogenesis whereby electron-clear evolve to electron-intermediate and then to electron-dense carboxysomes by the progressive sequestering of Rubisco molecules. Cells responded to limitation in CO₂ supply by increasing carboxysome frequency and the proportion of typical electron-dense carboxysomes, the extent of the response depending on the degree of limitation. The time course of carboxysome expression during transfers between different conditions of CO₂ supply indicated that, under our experimental conditions, there were different levels of response, depending on the degree of limitation. The first level occured at atmospheric levels of CO₂ and involved changes in the affinity of the CCM and in carboxysome, which occurred simultaneously. More severe limitation of CO₂ supply affected carboxysomes exclusively, without further improvement in the affinity of the CCM.     

CO2-concentrating mechanisms: a direct role for thylakoid lumen acidification?

A testable mechanism of CO₂ accumulation in photolithotrophs, originally suggested by Pronina & Semenenko, is quantitatively analysed. The mechanism involves (as does the most widely accepted hypothesis) the delivery of HCO₃^? to the compartment containing Rubisco. It differs in proposing subsequent HCO₃^? entry (by passive uniport) to the thylakoid lumen, followed by carbonic anhydrase activity in the lumen; uncatalysed conversion of HCO₃^? to CO₂, even at the low pH of the lumen, is at least 300 times too slow to account for the rate of inorganic C acquisition. Carbonic anhydrase converts the HCO₃^? to CO₂ at the lower pH maintained in the illuminated thylakoid lumen by the light-driven H⁺ pump, generating CO₂ at 10 times or more the thylakoid HCO₃^? concentration. Efflux of this CO₂ can suppress Rubisco oxygenase activity and stimulate carboxylase activity in the stroma. This mechanism differs from the widely accepted hypotheses in the required location of carbonic anhydrase, i.e. in the thylakoid lumen rather than the stroma or pyrenoid, and in the need for HCO₃^? influx to thylakoids. The capacity for anion (assayed as Cl^?) entry by passive uniport reported for thylakoid membranes is adequate for the proposed mechanism; if the Cl^? channel does not transport HCO₃^?, HCO₃^? entry could be by combination of the Cl^? channel with a Cl^? HCO₃^? antiporter. This mechanism is particularly appropriate for organisms which lack overt accumulation of total inorganic C in cells, but which nevertheless have the gas exchange characteristics of an organism with a CO₂-concentrating mechanism.     

Enhanced Chlorella vulgaris Buitenzorg growth by photon flux density alteration in serial photobioreactors

Microalgae perform oxygenic photosynthesis and are capable of taking up a large amount of CO₂, using an inducible CO₂ concentrating mechanism (CCM), and fixing CO₂ into higher compounds. These characteristics make the microalgae potentially useful for removal and utilization of CO₂ emitted from industrial plants and, generally, the usage of photosynthetic microorganisms has increased and significantly improved as a solution for CO₂ emissions. In this light and based on previous research using Anabaena cylindrica IAM M1 and Spirulina platensis IAM M 135, enhancement was sought for CO₂ fixation and biomass production by Chlorella vulgaris Buitenzorg by increasing the photon flux density concurrent with increases in culture biomass during the cellular growth phase and was compared to cultures of Chlorella grown at optimal constant illumination, with all cultures grown using Bennick basal medium, 29°C, and a flow of 1.0 atm. 10% CO₂ enriched air delivered to three in serial photobioreactors of 0.200 dm³ capacity each. The results showed that increasing illumination during culture increased biomass production of Chlorella by ∼60% as well as increased CO₂ fixation ability by ∼7.0%. It was also demonstrated that the non-competitive inhibition of [HCO₃ ⁻] as a carbon source significantly affected the cultivation in both the increasing and constant photon flux density regimes.