Degradation and Preservation of Vascular Plant-derived Biomarkers in Grassland and Forest Soils from Western Canada

The total solvent extracts (TSE) of mineral and organic horizons of selected soils and overlying vegetation were analyzed using gas chromatography–mass spectrometry (GC–MS) to determine the composition of solvent-extractable (‘free’) lipids in soils and to study the degradation and possible preservation of vascular plant-derived molecular markers (biomarkers) in soils. Major compound classes in the TSE of soils and vegetation included a homologous series of aliphatic lipids (alkanoic acids, alkanols, alkanes), steroids, and terpenoids. Characteristic patterns of aliphatic and cyclic biomarkers derived from the overlying, native vegetation were recognized in the associated soil samples indicating the preservation of lipids from the external waxes of vascular plants in the soil organic matter (SOM). The observed biomarker patterns in the grassland soils (Brown Chernozems) were similar to the compounds identified in their major source vegetation, Western Wheatgrass. A similar composition of biomarkers was observed in Aspen leaves and the soil horizons of the forest–grassland transition soil (Dark Gray Chernozem). The Lodgepole Pine needles yielded a characteristic pattern of diterpenoids that was also detected in leaf litter and the O horizon of the associated forest soil (Brunisol). The results demonstrate that solvent extractable biomarkers derived from vascular plants maintain their characteristic pattern of aliphatic and cyclic lipids despite ongoing degradation processes and are thus valuable molecular markers for the determination of the sources of SOM. Furthermore, the abundance of aliphatic wax lipids in plant material and soils decreased at higher rates than the steroids and terpenoids indicating the preferential degradation of aliphatic over cyclic biomarkers. Most of the plant-derived steroids and terpenoids identified in the soils were unaltered, preserved biomolecules as observed in the source vegetation, but minor amounts of their degradation products were also present. Oxidation products of plant sterols are reported here for the first time in soils. The detected alteration products of steroids and diterpenoids are consistent with the oxidative degradation of free cyclic biomarkers in decomposing plant material and soils.     

Cupric Oxide (CuO) Oxidation Detects Pyrogenic Carbon in Burnt Organic Matter and Soils

Wildfire greatly impacts the composition and quantity of organic carbon stocks within watersheds. Most methods used to measure the contributions of fire altered organic carbon–i.e. pyrogenic organic carbon (Py-OC) in natural samples are designed to quantify specific fractions such as black carbon or polyaromatic hydrocarbons. In contrast, the CuO oxidation procedure yields a variety of products derived from a variety of precursors, including both unaltered and thermally altered sources. Here, we test whether or not the benzene carboxylic acid and hydroxy benzoic acid (BCA) products obtained by CuO oxidation provide a robust indicator of Py-OC and compare them to non-Py-OC biomarkers of lignin. O and A horizons from microcosms were burned in the laboratory at varying levels of fire severity and subsequently incubated for 6 months. All soils were analyzed for total OC and N and were analyzed by CuO oxidation. All BCAs appeared to be preserved or created to some degree during burning while lignin phenols appeared to be altered or destroyed to varying extents dependent on fire severity. We found two specific CuO oxidation products, o-hydroxybenzoic acid (oBd) and 1,2,4-benzenetricarboxylic acid (BTC2) that responded strongly to burn severity and withstood degradation during post-burning microbial incubations. Interestingly, we found that benzene di- and tricarboxylic acids (BDC and BTC, respectively) were much more reactive than vanillyl phenols during the incubation as a possible result of physical protection of vanillyl phenols in the interior of char particles or CuO oxidation derived BCAs originating from biologically available classes of Py-OC. We found that the ability of these compounds to predict relative Py-OC content in burned samples improved when normalized by their respective BCA class (i.e. benzene monocarboxylic acids (BA) and BTC, respectively) and when BTC was normalized to total lignin yields (BTC:Lig). The major trends in BCAs imparted by burning persisted through a 6 month incubation suggesting that fire severity had first order control on BCA and lignin composition. Using original and published BCA data from soils, sediments, char, and interfering compounds we found that BTC:Lig and BTC2:BTC were able to distinguish Py-OC from compounds such as humic materials, tannins, etc. The BCAs released by the CuO oxidation procedure increase the functionality of this method in order to examine the relative contribution of Py-OC in geochemical samples.     

The effect of agricultural utilization on the composition and yield of phenolic acids in low peat soils

Summary Levels of benzoic and cinnamic acids in low peat soils, maintained for 25 years under four different cropping systems, were studied in field experiments. The soil samples were obtained from four horizons of thirteen selected profiles. Seven phenolic acids were identified by high performance liquid chromatographic (HPLC) techniques and their amounts were determined quantitatively. The concentration of phenolic acids in the soils depended on the cropping system and the depth of the soil profiles. Permanent grassland had the highest yield of phenolic compounds in peat soils. Much smaller amounts were found in the order forest, alternate and field utilization. Thus, phenolic compounds may be useful markers with which to follow the decomposition in peat soils. The content of phenolic acids decreased with the depth of the profiles, but in some cases the 25–30 cm soil layers contained higher amounts of phenols than the 5–10 cm layers. Compared with the surface layers the deeper horizons (55–60 cm and 95–100 cm) were low in phenolic acids.     

Response of dissolved organic matter in the forest floor to long-term manipulation of litter and throughfall inputs

Dissolved organic matter (DOM) contributes to organic carbon either stored in mineral soil horizons or exported to the hydrosphere. However, the main controls of DOM dynamics are still under debate. We studied fresh leaf litter and more decomposed organic material as the main sources of DOM exported from the forest floor of a mixed beech/oak forest in Germany. In the field we doubled and excluded aboveground litter input and doubled the input of throughfall. From 1999 to 2005 we measured concentrations and fluxes of dissolved organic C and N (DOC, DON) beneath the Oi and Oe/Oa horizon. DOM composition was traced by UV and fluorescence spectroscopy. In selected DOM samples we analyzed the concentrations of phenols, pentoses and hexoses, and lignin-derived phenols by CuO oxidation. DOC and DON concentrations and fluxes almost doubled instantaneously in both horizons of the forest floor by doubling the litter input and DOC concentrations averaged 82 mg C l⁻¹ in the Oe/Oa horizon. Properties of DOM did not suggest a change of the main DOM source towards fresh litter. In turn, increasing ratios of hexoses to pentoses and a larger content of lignin-derived phenols in the Oe/Oa horizon of the Double litter plots in comparison to the Control plots indicated a priming effect: Addition of fresh litter stimulated microbial activity resulting in increased microbial production of DOM from organic material already stored in Oe/Oa horizons. Exclusion of litter input resulted in an immediate decrease in DOC concentrations and fluxes in the thin Oi horizon. In the Oe/Oa horizon DOC concentrations started to decline in the third year and were significantly smaller than those in the Control after 5 years. Properties of DOM indicated an increased proportion of microbially and throughfall derived compounds after exclusion of litter inputs. Dissolved organic N did not decrease upon litter exclusion. We assume a microbial transformation of mineral N from throughfall and N mineralization to DON. Increased amounts of throughfall resulted in almost equivalently increased DOC fluxes in the Oe/Oa horizon. However, long-term additional throughfall inputs resulted in significantly declining DOC concentrations over time. We conclude that DOM leaving the forest floor derives mainly from decomposed organic material stored in Oe/Oa horizons. Leaching of organic matter from fresh litter is of less importance. Observed effects of litter manipulations strongly depend on time and the stocks of organic matter in forest floor horizons. Long-term experiments are particularly necessary in soils/horizons with large stocks of organic matter and in studies focusing on effects of declined substrate availability. The expected increased primary production upon climate change with subsequently enhanced litter input may result in an increased production of DOM from organic soil horizons.     

Lignin properties in topsoils of a beech/oak forest after 8 years of manipulated litter fall: relevance of altered input and oxidation of lignin

Background and aims

We studied the response of lignin oxidation in soils of a beech/oak forest to changes in litter fall. Additionally we considered possible factors in lignin oxidation, including altered (i) input of fresh organic matter and (ii) fungi-to-bacteria ratios.

Methods

The field-based experiment included (i) doubling and (ii) exclusion of litter fall and (iii) controls with ambient litter fall. Soil (0–20 cm depth) was sampled after 8 years. We analyzed (i) lignin using the CuO oxidation method, (ii) stocks of free and mineral-bound organic carbon (OC), (iii) the response of soil organic matter (SOM) decomposition to addition of labile organic compounds in laboratory incubations, and (iv) ratios of fungal- vs. bacterial-derived amino sugars (F/B ratios).

Results

Litter exclusion increased stocks of free-light fraction OC, F/B ratios, the ability of the microbial community to use labile compounds for SOM decomposition, as well as acid-to-aldehyde ratios of vanillyl-type lignin phenols in A horizons. Litter addition had no such effects. We assume that litter exclusion caused enhanced transport of organic debris from lower forest floor horizons with rainwater into the A horizon. Enhanced input of organic debris might have increased (i) the availability of labile compounds and (ii) F/B ratios. Consequently, lignin oxidation increased.

Conclusions

Enhanced input of organic debris from forest floors can increase lignin oxidation in mineral topsoils of the studied forest. The expected gradual changes in litter fall due to climate change likely will cause no such effects.     

Lignin decomposition along an Alpine elevation gradient in relation to physicochemical and soil microbial parameters

Lignin is an aromatic plant compound that decomposes more slowly than other organic matter compounds; however, it was recently shown that lignin could decompose as fast as litter bulk carbon in minerals soils. In alpine Histosols, where organic matter dynamics is largely unaffected by mineral constituents, lignin may be an important part of soil organic matter (SOM). These soils are expected to experience alterations in temperature and/or physicochemical parameters as a result of global climate change. The effect of these changes on lignin dynamics remains to be examined and the importance of lignin as SOM compound in these soils evaluated. Here, we investigated the decomposition of individual lignin phenols of maize litter incubated for 2 years in‐situ in Histosols on an Alpine elevation gradient (900, 1300, and 1900 m above sea level); to this end, we used the cupric oxide oxidation method and determined the phenols’ ¹³C signature. Maize lignin decomposed faster than bulk maize carbon in the first year (86 vs. 78% decomposed); however, after the second year, lignin and bulk C decomposition did not differ significantly. Lignin mass loss did not correlate with soil temperature after the first year, and even correlated negatively at the end of the second year. Lignin mass loss also correlated negatively with the remaining maize N at the end of the second year, and we interpreted this result as a possible negative influence of nitrogen on lignin degradation, although other factors (notably the depletion of easily degradable carbon sources) may also have played a role at this stage of decomposition. Microbial community composition did not correlate with lignin mass loss, but it did so with the lignin degradation indicators (Ac/Al)s and S/V after 2 years of decomposition. Progressing substrate decomposition toward the final stages thus appears to be linked with microbial community differentiation.     

Changes in dissolved lignin-derived phenols, neutral sugars, uronic acids, and amino sugars with depth in forested Haplic Arenosols and Rendzic Leptosols

A major part of the dissolved organic matter produced in the organic layers of forest ecosystems and leached into the mineral soil is retained by the upper subsoil horizons. The retention is selective and thus dissolved organic matter in the subsoils has different composition than dissolved organic matter leached from the forest floor. Here we report on changes in the composition of dissolved organic matter with soil depth based on C-to-N ratios, XAD-8 fractionation, wet-chemical analyses (lignin-derived CuO oxidation products, hydrolysable sugars and amino sugars) and liquid-state ¹³C nuclear magnetic resonance (NMR) spectroscopy. Dissolved organic matter was sampled directly beneath the forest floor using tension-free lysimeters and at 90cm depth by suction cups in Haplic Arenosols under Scots pine (Pinus sylvestris L.) and Rendzic Leptosols under European beech (Fagus sylvatica L.) forest. At both sites, the concentrations of dissolved organic carbon (DOC) decreased but not as strongly as reported for deeply weathered soils. The decrease in DOC was accompanied by strong changes in the composition of dissolved organic matter. The proportion of the XAD-8-adsorbable (hydrophobic) fraction, carboxyl and aromatic C, and the concentrations of lignin-derived phenols decreased whereas the concentrations of sugars, amino sugars, and nitrogen remained either constant or increased. A general feature of the compositional changes within the tested compound classes was that the ratios of neutral to acidic compounds increased with depth. These results indicate that during the transport of dissolved organic matter through the soils, oxidatively degraded lignin-derived compounds were preferentially retained while potentially labile material high in nitrogen and carbohydrates tended to remain dissolved. Despite the studied soils' small capacity to sorb organic matter, the preferential retention of potentially refractory and acidic compounds suggests sorption by the mineral soil matrix rather than biodegradation to govern the retention of dissolved organic matter even in soils with a low sorption capacity.     

O/N-alkyl and alkyl C are stabilised in fine particle size fractions of forest soils

Carbon stocks and organic matter composition in bulk soils and particle size fractions of Ah horizons from Luvisols, Leptosols and Phaeozems under European beech (Fagus silvatica L.) forest were investigated by elemental analysis, solid state ¹³C nuclear magnetic resonance (¹³C CPMAS NMR) spectroscopy and lignin analysis (CuO-oxidation). Radiocarbon age was used as an indicator for C turnover. The SOM of bulk soils and particle size fractions is dominated by O/N-alkyl C and alkyl C. Compared to sand and silt fractions, clay fractions had lower C/N ratios and ¹⁴C abundances. Aryl C and more specifically phenolic components (O-aryl C) decreased from sand to clay fractions. The concomitant decrease of lignin, determined by CuO oxidation, suggests that a major proportion of O-aryl C can be attributed to lignin. Positive nonlinear relations between the O-aryl C and the C/N ratio reveal the trend of decreasing O-aryl C proportions with increasing decomposition. Although lignin is believed to be highly recalcitrant, only low amounts of lignin are found in the stable clay fractions. In contrast to O-aryl C, the O/N-alkyl C contribution decreased from sand to silt fractions, but increased again in the clay fractions, whereas alkyl C contents exhibited lowest values in the sand fractions. These results are indicative of stabilisation processes operating specifically on polysaccharides and alkyl C, but not on aryl C, through association with the clay fraction.     

Preferential degradation of phenolic lignin units by two white rot fungi.

The differential biodegradation of phenolic and nonphenolic (C-4-etherified) lignin units in wheat straw treated with the white rot fungi Pleurotus eryngii and Phanerochaete chrysosporium was investigated under solid-state fermentation conditions. Two analytical techniques applied to permethylated straw were used for this purpose, i.e., alkaline CuO degradation and analytical pyrolysis (both followed by gas chromatography-mass spectrometry for product identification). Despite differences in the enzymatic machinery produced, both ligninolytic fungi caused a significant decrease in the relative amount of phenolic lignin units during the degradation process. Nevertheless, no differences in the biodegradation rates of phenolic and etherified cinnamic acids were observed. Changes in lignin composition and cinnamic acid content were also analyzed in the phenolic and nonphenolic lignin moieties. The results obtained are discussed in the context of the enzymatic mechanisms of lignin biodegradation.     

Influence of radiata pine seedlings on chemical properties of some New Zealand montane grassland soils

Interaction between soil acidity and vegetation phenolic concentration was investigated to identify mechanisms by which forests sustain productivity on extremely acidic, infertile soils. Contrasting soils on well-preserved marine terraces of the “Ecological Staircase’ near Mendocino, CA comprise an extreme edaphic gradient. Pygmy forests of dwarf (< 5m) Mendocino cypress (Cupressus pygmaea), Bolander pine (Pinus contorta var. bolanderi), and Bishop pine (Pinus muricata) are found on the oldest, most acidic soils, and along a gradient that includes three distinct levels of soil acidity, with pH(CaCl₂) ranging from 5.0 to 3.0 in the upper mineral soil and from 4.0 to 2.0 in the litter layer where fine roots are concentrated. Mature foliage was collected from five sites on this edaphic gradient. Aqueous methanol extracts of the samples were analyzed for concentrations of total phenols and condensed tannin by the Prussian blue and acidified vanillin assays, respectively. There were significant differences (p<0.05) in foliar condensed tannin and phenolic concentrations within each species and concentrations were inversely related to soil pH, approximately doubling along the gradient. Natural selection for soil-regulated variation in polyphenol concentration is interpreted in the context of plant-litter-soil interactions as an adaptation that permits these conifers to survive in extremely acidic soils. H Lambers Section editor     

Lignin content versus syringyl to guaiacyl ratio amongst poplars

Two oxidation techniques that afford high yields of monomers and dimers were used to more accurately estimate the syringyl to guaiacyl (S:G) ratio of hardwood lignins. Permanganate oxidation of the woodmeal after a CuO pre-hydrolysis step gave poor results and this was attributed to preferential oxidation and degradation of syringyl nuclei by CuO. However, this procedure did provide a good estimate of the percentages of both S and G phenylpropane (C(9)) units that were uncondensed. When the total S and G products from nitrobenzene oxidation (NBO) of the uncondensed fractions were corrected, credible S:G ratios were obtained. These ratios were in good agreement with results from KMnO4 oxidation of dissolved kraft lignin without CuO pre-hydrolysis. The corrected NBO method was used to determine the S:G ratio of 13 poplars, and the values ranged from 1.01 to 1.68. Unlike results from other investigations, an excellent linear correlation (R(2) =0.846) was obtained for a decreasing lignin content (28% to 16.5%) with an increase in the S:G ratio.     

Biochemical origin and refractory properties of humic acid extracted from maize plants: the contribution of lignin

The soil organic carbon (SOC) pool is the largest terrestrial reservoir of carbon and plant residues play an important role in its maintenance. Up to 70–80% of SOC in arable soil is composed of humic substances (HS). In these soils post-harvested residues, left in arable soil after harvesting the crops, are the basic source of humus. Previous research indicated that maize plants residue contain a humic acid (HA) fraction possessing recalcitrant compounds that contributed to soil-HA fraction. This study presents updated results obtained using Pyrolysis-Gas Chromatography/Mass Spectrometry (Py-GC/MS) to provide an indication of the contribution of the lignin to the soil HA. Results obtained indicated that the HAs from maize plants were mainly composed of lignin-derived moieties that were likely derived from the partial hydrolysis of p-coumaric and ferulic acid that are linked to lignin, polysaccharides or other biopolymers of the cell wall. Lignin composing the HAs derived from plants and incubated in soil was substantially preserved. Nevertheless the modification of the syringyl/guaiacyl ratio and the oxidation of the side-chains of lignin, suggested a turnover of lignin-derived molecules in soil-HA fraction. This fact indicated an involvement of the alkali insoluble fraction of maize plant residue (humin) in the soil-HA formation, up-dating our previous knowledge.     

Temporal variation in river nutrient and dissolved lignin phenol concentrations and the impact of storm events on nutrient loading to Hood Canal, Washington, USA

Rapid rainfall events can be responsible for a large proportion of annual nutrient and carbon loading from a watershed. The bioavailability of organic matter during these rapid loading events increases, suggesting that storms play a relevant role in the mobilization of potentially labile terrestrial carbon. A high correlation between river discharge rates and dissolved and particulate nutrient and carbon concentrations during autumn and winter storms was observed in several temperate Pacific Northwest rivers. Dissolved and particulate lignin concentrations also increased with river discharge; for example, in October 2009 dissolved lignin concentrations increased roughly 240% with a 200% increase in river discharge. During these storms a unique phenolic composition was observed for dissolved lignin that was rapidly mobilized from surface soils relative to the base flow of dissolved lignin. The observed increase in Ad/Al ratios with discharge indicates that rapidly mobilized dissolved lignin is more degraded than the base flow of dissolved lignin. Similarly, a marked increase in C/V ratios and decrease in the S/V ratio of dissolved lignin phenols with increasing river discharge was observed. These results may indicate a difference in source between mobilized and base flow pools, or, more likely, preferential degradation and mobilization/retention of specific lignin phenols. The cumulative results from this year-long data set indicate that a shallow nutrient-rich pool of particulate and dissolved organic matter accumulates in watersheds during periods of soil-saturation deficiency (summer). Autumn and winter storms mobilize this pool of accumulated nutrients from surface soils, which is exhausted with successive winter storms.     

Degradation of non-phenolic lignin by the white-rot fungus Pycnoporus cinnabarinus

High-molecular-weight lignin was methylated with diazomethane. The lignin (i.e., phenolic lignin) and methylated lignin (i.e., non-phenolic lignin) were mixed with fully bleached softwood pulp. Degradation of the lignin preparations by the white rot fungus Pycnoporus cinnabarinus was studied. After a 3-month incubation with the fungus, over 40% of the non-phenolic lignin and about 70% the phenolic lignin were degraded. The presence of phenolic hydroxyl groups in lignin greatly enhanced the degradation rate of lignin. This study reveals that P. cinnabarinus, an exclusively laccase-producing fungus, is capable of oxidatively degrading both phenolic and non-phenolic lignins. The ability of the fungus to degrade non-phenolic lignin suggests that a laccase/mediator system is involved in the complete degradation of lignin. After the fungal degradation of lignins, the content of carboxylic acids substantially increased for both phenolic and non-phenolic lignins.     

Changes in lignin content of leaf litters during mulching

Alkaline nitrobenzene oxidation, ozonation and methoxyl content determinations were applied to decomposing leaf litter of Ginkgo biloba L., Cinnamomum camphora sieb., Zelkova serrata Makino and Firmiana simplex W. F. Wight, respectively, during mulching to investigate the properties and estimate changes in lignin composition and content. Since the Klason lignin residue originated from components highly resistant to degradation by acid, the methoxyl content of Klason residue was used to estimate the lignin content of leaf litter. Quantitative analysis of presumed lignin-derived fragments, by use of alkaline nitrobenzene oxidation and ozonation methods, suggested that the estimated lignin content approximates that of the real lignin content of leaves, which is greatly overestimated by the Klason procedure. The estimated lignin contents ranged from 3.9 to 10.0% while the Klason lignan residue varied from 37.1 to 46.7% in un-mulched leaf litter. The absolute amounts of the measured lignin somewhat decreased during mulching, while the structure of lignin remaining in leaf litters after mulching was considered not to be very different from its original structure.     

The Effect of Tillage and Mesorelief on the Structure of Soil Microbial Cenoses

The investigation of soil microbial cenoses in cultivated catenas and in virgin soils at the foot of catenas showed that the structure of these microbiocenoses depends on the type of the vegetation cover, the characteristics of mesorelief, and the degree of soil tillage. The microbiocenoses were found to be dominated by the fungal mycelium. The proportion of bacteria and fungal spores was higher and the seasonal variations in the soil microbial communities were more distinct in the cultivated than in the virgin swamp and forest soils. The type of mesorelief was found to appreciably influence microbial populations in the top humus-rich horizons of the cultivated soils and not in the mineral soil horizons.     

Local environmental correlates of variability in the organic soils of moorland and alpine vegetation,Mt Sprent,Tasmania

Abstract Data on soils, vegetation and environment were collected between 510 and 1050m a. s. l. on Mt Sprent, southwestern Tasmania, traversing the Gymnoschoenus sphaerocephalus sedgeland-alpine vegetation boundary. One or more of the following horizons were found in almost all soil pits (downwards from the surface to the bed rock) fibric peat, hemic peat, sapric peat, organic sand, sand and clay. Mean total soil depth, mean organic soil depth, mean humification of the soil surface horizon, pH and mean organic content of the surface horizon all decline with altitude, while the redness of the soil and the mean depth of the mineral and gravel layers increase. At four intensively studied sites at 620, 850, 930 and 1040 m the relationships between phytosociological, topographic and water-table variables, and soil characteristics were determined. The pH of the topsoil was significantly positively related to water-table depth at three sites, but there were no other relationships between local environmental variation and soil characteristics that were consistent between most of the four sites, despite a large number of locally significant relationships. The alpine and sedgeland soils differ most markedly in colour, number of horizons and degree of humification of the surface horizon. The vegetation at each site was separated into communities along a drainage gradient. The mesoscale differences in soils seem most likely to be attributable to a vegetation productivity gradient.     

Bacterial and archaea community present in the Pine Barrens Forest of Long Island, NY: unusually high percentage of ammonia oxidizing bacteria

Of the few preserved areas in the northeast of United States, the soil in the Pine Barrens Forests presents a harsh environment for the microorganisms to grow and survive. In the current study we report the use of clustering methods to scientifically select the sampling locations that would represent the entire forest and also report the microbial diversity present in various horizons of the soil. Sixty six sampling locations were selected across the forest and soils were collected from three horizons (sampling depths). The three horizons were 0-10 cm (Horizon O); 11-25 cm (Horizon A) and 26-40 cm (Horizon B). Based on the total microbial substrate utilization pattern and K-means clustering analysis, the soil in the Pine Barrens Forest can be classified into four distinct clusters at each of the three horizons. One soil sample from each of the four clusters were selected and archaeal and bacterial populations within the soil studied using pyrosequencing method. The results show the microbial communities present in each of these clusters are different. Within the microbial communities present, microorganisms involved in nitrogen cycle occupy a major fraction of microbial community in the soil. High level of diversity was observed for nitrogen fixing bacteria. In contrast, Nitrosovibrio and Nitrosocaldus spp are the single bacterial and archaeal population respectively carrying out ammonia oxidation in the soil.     

Molecular 14C evidence for contrasting turnover and temperature sensitivity of soil organic matter components

Climate projection requires an accurate understanding for soil organic carbon (SOC) decomposition and its response to warming. An emergent view considers that environmental constraints rather than chemical structure alone control SOC turnover and its temperature sensitivity (i.e., Q₁₀), but direct long-term evidence is lacking. Here, using compound-specific radiocarbon analysis of soil profiles along a 3300-km grassland transect, we provide direct evidence for the rapid turnover of lignin-derived phenols compared with slower-cycling molecular components of SOC (i.e., long-chain lipids and black carbon). Furthermore, in contrast to the slow-cycling components whose turnover is strongly modulated by mineral association and exhibits low Q₁₀, lignin turnover is mainly regulated by temperature and has a high Q₁₀. Such contrasts resemble those between fast-cycling (i.e., light) and mineral-associated slow-cycling fractions from globally distributed soils. Collectively, our results suggest that warming may greatly accelerate the decomposition of lignin, especially in soils with relatively weak mineral associations.     

Lignin peroxidase: toward a clarification of its role in vivo

The extracellular lignin peroxidase from the white-rot basidiomycete Phanerochaete chrysosporium is thought to play an important role in lignin biodegradation. However, the majority of lignin-derived preparations actually experience overall polymerization at the hands of the enzyme in vitro. It has now been found that, in the presence of H2O2 at pH 4.0, the monomeric lignin precursor coniferyl alcohol is polymerized quantitatively by a lignin peroxidase preparation which is uncontaminated with MnII-dependent peroxidases. 13C NMR spectrometry of the resulting dehydropolymerisates from 13C-labeled monolignols confirms that the frequencies of different interunit linkages are very similar to those engendered through the action of horseradish peroxidase with H2O2. Indeed, lignin peroxidase does not ultimately seem to be a prerequisite for lignin degradation in vivo, yet its activity can still accelerate the conversion of lignin-derived preparations by P. chrysosporium to CO2. Consequently, lignin peroxidase can provisionally be expected to fulfill two important functions. On the one hand, the enzyme may detoxify lower molecular weight phenolic compounds released from lignins during their fungal decomposition. On the other hand, through the introduction of suitable functional groups, lignin peroxidase could indirectly enhance the susceptibility of macromolecular lignin structures toward depolymerization by another enzyme.