Kinetics study of pyridine biodegradation by a novel bacterial strain,Rhizobium sp. NJUST18

Biodegradation of pyridine by a novel bacterial strain, Rhizobium sp. NJUST18, was studied in batch experiments over a wide concentration range (from 100 to 1,000 mg l^?1). Pyridine inhibited both growth of Rhizobium sp. NJUST18 and biodegradation of pyridine. The Haldane model could be fitted to the growth kinetics data well with the kinetic constants μ* = 0.1473 h^?1, K _s = 793.97 mg l^?1, K _i = 268.60 mg l^?1 and S _m = 461.80 mg l^?1. The true μ _max, calculated from μ*, was found to be 0.0332 h^?1. Yield coefficient Y _X/S depended on S _i and reached a maximum of 0.51 g g^?1 at S _i of 600 mg l^?1. V _max was calculated by fitting the pyridine consumption data with the Gompertz model. V _max increased with initial pyridine concentration up to 14.809 mg l^?1 h^?1. The q _S values, calculated from $V_{ \hbox{max} }$ , were fitted with the Haldane equation, yielding q _Smax = 0.1212 g g^?1 h^?1 and q* = 0.3874 g g^?1 h^?1 at S _m′ = 507.83 mg l^?1, K _s′ = 558.03 mg l^?1, and K _i′ = 462.15 mg l^?1. Inhibition constants for growth and degradation rate value were in the same range. Compared with other pyridine degraders, μ _max and S _m obtained for Rhizobium sp. NJUST18 were relatively high. High K _i and K _i′ values and extremely high K _s and K _s′ values indicated that NJUST18 was able to grow on pyridine within a wide concentration range, especially at relatively high concentrations.     

Enhancing ethanol production from cellulosic sugars using <Emphasis Type="Italic">Scheffersomyces (Pichia) stipitis</Emphasis>

Studies were performed on the effect of CaCO₃ and CaCl₂ supplementation to fermentation medium for ethanol production from xylose, glucose, or their mixtures using Scheffersomyces (Pichia) stipitis. Both of these chemicals were found to improve maximum ethanol concentration and ethanol productivity. Use of xylose alone resulted in the production of 20.68 ± 0.44 g L^?1 ethanol with a productivity of 0.17 ± 0.00 g L^?1 h^?1, while xylose plus 3 g L^?1 CaCO₃ resulted in the production of 24.68 ± 0.75 g L^?1 ethanol with a productivity of 0.21 ± 0.01 g L^?1 h^?1. Use of xylose plus glucose in combination with 3 g L^?1 CaCO₃ resulted in the production of 47.37 ± 0.55 g L^?1 ethanol (aerobic culture), thus resulting in an ethanol productivity of 0.39 ± 0.00 g L^?1 h^?1. These values are 229 % of that achieved in xylose medium. Supplementation of xylose and glucose medium with 0.40 g L^?1 CaCl₂ resulted in the production of 44.84 ± 0.28 g L^?1 ethanol with a productivity of 0.37 ± 0.02 g L^?1 h^?1. Use of glucose plus 3 g L^?1 CaCO₃ resulted in the production of 57.39 ± 1.41 g L^?1 ethanol under micro-aerophilic conditions. These results indicate that supplementation of cellulosic sugars in the fermentation medium with CaCO₃ and CaCl₂ would improve economics of ethanol production from agricultural residues.     

Biodegradation of 4-bromophenol by Arthrobacter chlorophenolicus A6 in batch shake flasks and in a continuously operated packed bed reactor

The present study investigated growth and biodegradation of 4-bromophenol (4-BP) by Arthrobacter chlorophenolicus A6 in batch shake flasks as well as in a continuously operated packed bed reactor (PBR). Batch growth kinetics of A. chlorophenolicus A6 in presence of 4-BP followed substrate inhibition kinetics with the estimated biokinetic parameters value of μ _max = 0.246 h^?1, K _i = 111 mg L^?1, K _s  = 30.77 mg L^?1 and K = 100 mg L^?1. In addition, variations in the observed and theoretical biomass yield coefficient and maintenance energy of the culture were investigated at different initial 4-BP concentration. Results indicates that the toxicity tolerance and the biomass yield of A. chlorophenolicus A6 towards 4-BP was found to be poor as the organism utilized the substrate mainly for its metabolic maintenance energy. Further, 4-BP biodegradation performance by the microorganism was evaluated in a continuously operated PBR by varying the influent concentration and hydraulic retention time in the ranges 400–1,200 mg L^?1 and 24–7.5 h, respectively. Complete removal of 4-BP was achieved in the PBR up to a loading rate of 2,276 mg L^?1 day^?1.     

Biogeochemical regime shifts in coastal landscapes: the contrasting effects of saltwater incursion and agricultural pollution on greenhouse gas emissions from a freshwater wetland

Many coastal plain wetlands receive nutrient pollution from agricultural fields and are particularly vulnerable to saltwater incursion. Although wetlands are a major source of the greenhouse gases methane (CH₄) and nitrous oxide (N₂O), the consequences of salinization for greenhouse gas emissions from wetlands with high agricultural pollution loads is rarely considered. Here, we asked how saltwater exposure alters greenhouse gas emissions from a restored freshwater wetland that receives nutrient loading from upstream farms. During March to November 2012, we measured greenhouse gases along a ~2 km inundated portion of the wetland. Sampling locations spanned a wide chemical gradient from sites receiving seasonal fertilizer nitrogen and sulfate (SO₄ ^2?) loads to sites receiving seasonal increases in marine salts. Concentrations and fluxes of CH₄ were low (<100 µg L^?1 and <10 mg m^?2 h^?1) for all sites and sampling dates when SO₄ ^2? was high (>10 mg L^?1), regardless of whether the SO₄ ^2? source was agriculture or saltwater. Elevated CH₄ (as high as 1,500 µg L^?1 and 45 mg m^?2 h^?1) was only observed on dates when air temperatures were >27 °C and SO₄ ^2? was <10 mg L^?1. Despite elevated ammonium (NH₄ ⁺) for saltwater exposed sites, concentrations of N₂O remained low (<5 µg L^?1 and <10 µg m^?2 h^?1), except when fertilizer derived nitrate (NO₃ ^?) concentrations were high and N₂O increased as high as 156 µg L^?1. Our results suggest that although both saltwater and agriculture derived SO₄ ^2? may suppress CH₄, increases in N₂O associated with fertilizer derived NO₃ ^? may offset that reduction in wetlands exposed to both agricultural runoff and saltwater incursion.     

Complete and simultaneous removal of ammonium and m-cresol in a nitrifying sequencing batch reactor

The kinetic behavior, oxidizing ability and tolerance to m-cresol of a nitrifying sludge exposed to different initial concentrations of m-cresol (0–150 mg C L^?1) were evaluated in a sequencing batch reactor fed with 50 mg NH₄ ⁺-N L^?1 and operated during 4 months. Complete removal of ammonium and m-cresol was achieved independently of the initial concentration of aromatic compound in all the assays. Up to 25 mg m-cresol-C L^?1 (C/N ratio of 0.5), the nitrifying yield (Y-NO₃ ^?) was 0.86 ± 0.05, indicating that the nitrate was the main product of the process; no biomass growth was detected. From 50 to 150 mg m-cresol-C L^?1 (1.0 ≤ C/N ≤ 3.0), simultaneous microbial growth and partial ammonium-to-nitrate conversion were obtained, reaching a maximum microbial total protein concentration of 0.763 g L^?1 (247 % of its initial value) and the lowest Y-NO₃ ^? 0.53 ± 0.01 at 150 mg m-cresol-C L^?1. m-Cresol induced a significant decrease in the values of both specific rates of ammonium and nitrite oxidation, being the ammonium oxidation pathway the mainly inhibited. The nitrifying sludge was able to completely oxidize up to 150 mg m-cresol-C L^?1 by SBR cycle, reaching a maximum specific removal rate of 6.45 g m-cresol g^?1 microbial protein-N h^?1. The number of SBR cycles allowed a metabolic adaptation of the nitrifying consortium since nitrification inhibition decreased and faster oxidation of m-cresol took place throughout the cycles.     

Direct formation of axes in new plantlets of <Emphasis Type="Italic">Kappaphycus alvarezii</Emphasis> (Doty) Doty,as influenced by the use of AMPEP K<Superscript>+</Superscript>, spindle inhibitors,and plant growth hormones

In order to induce the direct formation of erect dark brown vegetative shoots of Kappahycus alvarezii, under micro-propagation conditions, the agricultural bio-stimulant “Acadian Marine Plant Extract Powder” (or AMPEP) K⁺ (a Canadian commercial extract of the brown seaweed Ascophyllum nodosum with enhanced levels of potassium) was used singly or in combination with colchicine or oryzalin at different concentrations plus (synthetic) plant growth regulators (i.e., PGR, IAA, and kinetin) over 45 days of incubation. Amongst the treatments tested, 5 mg L^?1 AMPEP K⁺ with PGR produced the longest direct axis shoots (9.6 ± 0.33 mm), followed by 0.1 mg L^?1 AMPEP K⁺ + 1.0 mg L^?1 oryzalin with PGR (8.7 ± 0.00 mm), 10 mg L^?1 AMPEP K⁺ + 0.5 mg L^?1 colchicine with PGR (8.6 ± 1.20 mm), and 0.5 mg AMPEP K⁺ only (5.3 ± 1.8 mm). The shortest, direct axis shoots measured were the following: 8.3 ± 0.33 mm with 0.1, 1 and 10 mg L^?1 AMPEP K⁺ with PGR, 6.0 ± 0.58 mm with 0.5 mg L^?1 AMPEP K⁺ + 0.1 mg L^?1 oryzalin with PGR, 5.3 ± 0.89 mm with 0.5 mg L^?1 AMPEP K⁺ + 0.1 mg L^?1 colchicine with PGR, and finally, 2.7 ± 0.33 mm with 0.1 mg L^?1 AMPEP K⁺ only. The percentage of direct shoots formed ranged from 93 to 100 % and 87 to 100 % in AMPEP K⁺ with PGR and AMPEP K⁺ only, respectively, while 62–100 % and 87–100 % were observed in AMPEP K⁺ + colchicine with PGR and AMPEP K⁺ + oryzalin with PGR, respectively. The use of AMPEP K⁺ with the PGR resulted in the longest and highest percentage formation of direct axis shoots. These observations, taken together, suggested the efficacy of AMPEP K⁺ used as a protocol to induce direct, erect shoots for the micro-propagation of K. alvarezii plantlets under laboratory conditions.     

Optimization of culture conditions for the production of polysaccharides and kinsenoside from the rhizome cultures of <Emphasis Type="Italic">Anoectochilus roxburghii</Emphasis> (Wall.) Lindl.

The present study designed two sets of experiments by using the uniform design method and investigated the effects of medium components on the accumulation of bioactive compounds (polysaccharide and kinsenoside) in rhizomes, in order to select a suitable culture medium for the rhizome suspension culture of Anoectochilus roxburghii (Wall.) Lindl. Among the combinations of Murashige and Skoog (MS) medium strengths and plant growth regulator (benzylaminopurine, BA; kinetin, KT; and α-naphthaleneacetic acid, NAA) concentrations, and the combinations of nitrogen, phosphorus, and sucrose concentrations, the maximum yield of polysaccharides and kinsenoside was achieved with 0.75 × MS?+?2.0 mg L^?1 BA?+?0.2 mg L^?1 KT?+?0.5 mg L^?1 NAA and 45 mM nitrogen?+?0.93 mM phosphorus?+?35 g L^?1 sucrose, respectively. Therefore, the optimal rhizome suspension culture medium was 0.75 × MS medium supplemented with 2.0 mg L^?1 BA, 0.2 mg L^?1 KT, 0.5 mg L^?1 NAA, and 35 g L^?1 sucrose. Yeast extract (YE) enhanced bioactive compound accumulation in rhizomes. The polysaccharide and kinsenoside production was significantly improved when 75 mg L^?1 YE was added to the culture medium after 30 d of rhizome suspension culture; 8.3 g L^?1 of polysaccharide and 6.1 g L^?1 of kinsenoside were obtained after 4 d of YE treatment. The 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical scavenging activity of YE-treated rhizomes was higher than that of YE-untreated rhizomes, demonstrating enhanced antioxidant activity of the treated bioreactor-cultured rhizomes.     

Determination of Trace Elements in Cow Placenta by Tungsten Coil Atomic Emission Spectrometry

Tungsten coil atomic emission spectrometry (WCAES) is used to determine trace levels of Mn (403.1 nm) and Cr (425.5 nm) in cow placenta. All samples were collected in Ilha Solteira, SP, Brazil. The instrumental setup is based on a tungsten filament extracted from 150 W, 15 V microscope light bulbs, a solid state power supply, fused silica lens, crossed Czerny-Turner spectrograph, and a thermoelectrically cooled charge-coupled device detector. The limits of detection (LOD) and quantification (LOQ) for Cr are 2 and 8 μg L^?1, and 20 and 60 μg L^?1 for Mn, respectively. Recoveries for 0.30 mg L^?1 spikes of each analyte were in the range 93.0–103.0%, and relative standard deviation (RSD) was between 6.50 and 7.20% for both elements. Placenta samples were microwave-assisted digested with diluted HNO₃ and H₂O₂ and analyzed by WCAES. The results for Cr and Mn were compared with values obtained by tandem inductively coupled plasma mass spectrometry (ICP-MS/MS). No statistically significant difference was observed between the different methods by applying a paired t test at a 95% confidence level. The average concentrations of Cr and Mn in the placentas evaluated were 0.95 ± 0.22 and 2.64 ± 0.39 μg g^?1, respectively. By using a short integration time, LODs for Cr and Mn were lower than values reported by recent works using a similar WCAES system.     

Improvement of 5-aminolevulinic acid production by Rubrivivax benzoatilyticus PS-5 with self-flocculation by co-fermentation of precursors and volatile fatty acids under pH-controlled conditions

Photosynthetic bacteria are known to utilize volatile fatty acids as a carbon source for growth and product formation. In this study, a new isolate, Rubrivivax benzoatilyticus PS-5, possessing self-flocculation properties, was cultivated in modified glutamate-malate (GM) medium containing glutamate and malate as carbon sources. The effect of acetic acid, propionic acid and butyric acid (at 1–4 g L^?1) as co-substrates and 7.5 mM glycine, 10 mM succinic acid as precursors for 5-aminolevulinic acid (ALA) production from R. benzoatilyticus PS-5 was investigated. Among the volatile fatty acids tested, acetic acid was preferred to butyric acid and propionic acid, with the optimum concentrations of 3 g L^?1, 1 g L^?1 and 3 g L^?1, respectively. The highest ALA production was 169.71 μM, 162.16 μM and 46.18 μM, respectively, while the highest productivity was 2.57 μM h^?1, 2.25 μM h^?1 and 0.96 μM h^?1, respectively. The precursor was consumed completely (100 %) while the assimilation of the acetic acid and butyric acid was 62.50 % and 48.65 %, respectively. Supplementation of propionic acid (at 1–4 g l^?1) had a negative effect on growth and ALA production. To increase production efficiency, the pH-control strategy (at pH 6.0–8.0) during fermentation was tested. The optimum pH was 7.0, giving the maximum ALA production of 286.18 μM and a productivity of 3.97 μM h^?1. These values were 1.68-fold and 1.54-fold higher, respectively, than those under uncontrolled pH conditions.     

Phosphorus retention of forested and emergent marsh depressional wetlands in differing land uses in Florida,USA

The translocation of phosphorus (P) from terrestrial landscapes to aquatic bodies is of concern due to the impact of elevated P on aquatic system functioning and integrity. Due to their common location in depressions within landscapes, wetlands, including so-called geographically isolated wetlands (GIWs), receive and process entrained P. The ability of depressional wetlands, or GIWs, to sequester P may vary by wetland type or by land use modality. In this study we quantified three measures of P sorption capacities for two common GIW types (i.e., emergent marsh and forested wetlands) in two different land use modalities (i.e., agricultural and least impacted land uses) across 55 sites in Florida, USA. The equilibrium P concentration (EPC₀) averaged 6.42 ± 5.18 mg P L^?1 (standard deviation reported throughout); and ranged from 0.01–27.18 mg P L^?1; there were no differences between GIW type or land use modality, nor interaction effects. Significant differences in phosphorus buffering capacity (PBC) were found between GIW types and land use, but no interaction effects. Forested GIWs [average 306.64 ± 229.63 (mg P kg^?1) (µg P L^?1)^?1], and GIWs in agricultural settings [average 269.95 ± 236.87 (mg P kg^?1) (µg P L^?1)^?1] had the highest PBC values. The maximum sorption capacity (S_max) was found to only differ by type, with forested wetlands (1274.5 ± 1315.7 mg P kg^?1) having over three times the capacity of emergent GIWs (417.5 ± 534.6 mg P kg^?1). Classification trees suggested GIW soil parameters of bulk density, organic content, and concentrations of total P, H₂O-extractable P, and HCl-extractable P were important to classifying GIW P-sorption metrics. We conclude that GIWs have high potential to retain P, but that the entrained P may be remobilized to the wetland water column depending on storm and groundwater input P concentrations. The relative hydrologic dis-connectivity of GIWs from other aquatic systems may provide sufficient retention time to retain elevated P within these systems, thereby providing an ecosystem service to downstream waters.     

Elicitor mediated enhancement of wedelolactone in cell suspension culture of <Emphasis Type="Italic">Eclipta alba</Emphasis> (L.) Hassk

The present research focused on enhancing the production of wedelolactone through cell suspension culture (CSC) in Eclipta alba (L.) Hassk. With an aim of attaining a sustainable CSC, various plant growth regulators, elicitors and agitation speed were examined. Nodal segments of in vitro propagated plantlets induced the maximum percentage (93.47?±?0.61%) of callus inoculated on Murashige and Skoog (MS) medium fortified with picloram (2 mg L^?1). The growth kinetics of CSC exhibited a sigmoid pattern with a lag phase (0–6 days), a log phase (6–18 days), a stationary phase (18–24 days) and then death phase thereafter. The highest biomass accumulation in CSC with 7.09?±?0.06 g 50 mL^?1 fresh weight, 1.52?±?0.02 g 50 mL^?1 dry cell weight, 1.34?±?0.01?×?10⁶ cell mL^?1 total cell count and 57.00?±?0.58% packed cell volume was obtained in the liquid MS medium supplemented with 1.5 mg L^?1 picloram plus 0.5 mg L^?1 kinetin at 120 rpm. High performance thin layer chromatography confirmed that yeast extract (biotic elicitor) at 150 mg L^?1 accumulated more CSC biomass with 1.22-fold increase in wedelolactone (288.97?±?1.94 µg g^?1 dry weight) content in comparison to the non-elicited CSC (237.78?±?0.04 µg g^?1 dry weight) after 120 h of incubation. Contrastingly, methyl jasmonate (abiotic elicitor) did not alter the biomass but increased the wedelolactone content (259.32?±?1.06 µg g^?1 dry weight) to an extent of 1.09-fold at 100 µM. Complete plantlet regeneration from CSC was possible on MS medium containing N⁶-benzyladenine (0.75 mg L^?1) and abscisic acid (0.5 mg L^?1). Thus, the establishment of protocol for CSC constitutes the bases for future biotechnological improvement studies in this crop.     

Butanol production from concentrated lactose/whey permeate: Use of pervaporation membrane to recover and concentrate product

In these studies, butanol (acetone butanol ethanol or ABE) was produced from concentrated lactose/whey permeate containing 211 g L^?1 lactose. Fermentation of such a highly concentrated lactose solution was possible due to simultaneous product removal using a pervaporation membrane. In this system, a productivity of 0.43 g L^?1 h^?1 was obtained which is 307 % of that achieved in a non-product removal batch reactor (0.14 g L^?1 h^?1) where approximately 60 g L^?1 whey permeate lactose was fermented. The productivity obtained in this system is much higher than that achieved in other product removal systems (perstraction 0.21 g L^?1 h^?1 and gas stripping 0.32 g L^?1 h^?1). This membrane was also used to concentrate butanol from approximately 2.50 g L^?1 in the reactor to 755 g L^?1. Using this membrane, ABE selectivities and fluxes of 24.4–44.3 and 0.57–4.05 g m^?2 h^?1 were obtained, respectively. Pervaporation restricts removal of water from the reaction mixture thus requiring significantly less energy for product recovery when compared to gas stripping.     

Spatial and temporal dynamics of diffusive methane emissions in the Okavango Delta,northern Botswana,Africa

Global warming is associated with the continued increase in the atmospheric concentrations of greenhouse gases; carbon dioxide, methane (CH₄) and nitrous oxide. Wetlands constitute the largest single natural source of atmospheric CH₄ in the world contributing between 100 and 231 Tg year^?1 to the total budget of 503–610 Tg year^?1, approximately 60 % of which is emitted from tropical wetlands. We conducted diffusive CH₄ emission measurements using static chambers in river channels, floodplains and lagoons in permanent and seasonal swamps in the Okavango Delta, Botswana. Diffusive CH₄ emission rates varied between 0.24 and 293 mg CH₄ m^?2 h^?1, with a mean (±SE) emission of 23.2 ± 2.2 mg CH₄ m^?2 h^?1 or 558 ± 53 mg CH₄ m^?2 day^?1. These emission rates lie within the range reported for other tropical wetlands. The emission rates were significantly higher (P < 0.007) in permanent than in seasonal swamps. River channels exhibited the highest average fluxes at 31.3 ± 5.4 mg CH₄ m^?2 h^?1 than in floodplains (20.4 ± 2.5 mg CH₄ m^?2 h^?1) and lagoons (16.9 ± 2.6 mg CH₄ m^?2 h^?1). Diffusive CH₄ emissions in the Delta were probably regulated by temperature since emissions were highest (20–300 mg CH₄ m^?2 h^?1) and lowest (0.2–3.0 mg m^?2 h^?1) during the warmer-rainy and cooler winter seasons, respectively. Surface water temperatures between December 2010 and January 2012 varied from 15.3 °C in winter to 33 °C in summer. Assuming mean inundation of 9,000 km², the Delta’s annual diffusive emission was estimated at 1.8 ± 0.2 Tg, accounting for 2.8 ± 0.3 % of the total CH₄ emission from global tropical wetlands.     

Yield and kinetic constants estimation in the production of hydroxy fatty acids from oleic acid in a bioreactor by Pseudomonas aeruginosa 42A2

We modelled the production of hydroxy fatty acids from oleic acid by Pseudomonas aeruginosa 42A2 in a bioreactor with a non-dispersive aeration system. First, we designed an adapted wetted-wall gas-absorption column, offering a k _La value of 39.9 h^?1, to enhance oxygen absorption in the culture media and prevent foam formation. Then, we analysed different kinetic models to simulate the yield coefficients and the kinetic constants in this bacterial transformation. Monod model fitting (μ _max1?=?0.51 h^?1, K _S1?=?1.60 C-mol l^?1, μ _max2?=?0.12 h^?1, K _S2?=?0.035 C-mol l^?1, and k ₂?=?0.033 h^?1) showed a good accuracy with the experimental data sets and was chosen for its simplicity. Lastly, mass balances were carried out to establish the stoichiometry of this biotransformation with the following yield coefficients, Υ _X/OA, Υ _{X/(10S)-HPOME} and Υ _{(10S)-HPOME/(7S10S)-HPOME} of 0.172, 0.347 and 2.388 C-mol C-mol^?1, respectively.     

Soil N and C trace gas fluxes and microbial soil N turnover in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary

During two intensive field campaigns in summer and autumn 2004 nitrogen (N₂O, NO/NO₂) and carbon (CO₂, CH₄) trace gas exchange between soil and the atmosphere was measured in a sessile oak (Quercus petraea (Matt.) Liebl.) forest in Hungary. The climate can be described as continental temperate. Fluxes were measured with a fully automatic measuring system allowing for high temporal resolution. Mean N₂O emission rates were 1.5 μg N m⁻² h⁻¹ in summer and 3.4 μg N m⁻² h⁻¹ in autumn, respectively. Also mean NO emission rates were higher in autumn (8.4 μg N m⁻² h⁻¹) as compared to summer (6.0 μg N m⁻² h⁻¹). However, as NO₂ deposition rates continuously exceeded NO emission rates (−9.7 μg N m⁻² h⁻¹ in summer and −18.3 μg N m⁻² h⁻¹ in autumn), the forest soil always acted as a net NO _x sink. The mean value of CO₂ fluxes showed only little seasonal differences between summer (81.1 mg C m⁻² h⁻¹) and autumn (74.2 mg C m⁻² h⁻¹) measurements, likewise CH₄uptake (summer: −52.6 μg C m⁻² h⁻¹; autumn: −56.5 μg C m⁻² h⁻¹). In addition, the microbial soil processes net/gross N mineralization, net/gross nitrification and heterotrophic soil respiration as well as inorganic soil nitrogen concentrations and N₂O/CH₄ soil air concentrations in different soil depths were determined. The respiratory quotient (ΔCO_{2 resp} ΔO_{2 resp}⁻¹) for the uppermost mineral soil, which is needed for the calculation of gross nitrification via the Barometric Process Separation (BaPS) technique, was 0.8978 ± 0.008. The mean value of gross nitrification rates showed only little seasonal differences between summer (0.99 μg N kg⁻¹ SDW d⁻¹) and autumn measurements (0.89 μg N kg⁻¹ SDW d⁻¹). Gross rates of N mineralization were highest in the organic layer (20.1–137.9 μg N kg⁻¹ SDW d⁻¹) and significantly lower in the uppermost mineral layer (1.3–2.9 μg N kg⁻¹ SDW d⁻¹). Only for the organic layer seasonality in gross N mineralization rates could be demonstrated, with highest mean values in autumn, most likely caused by fresh litter decomposition. Gross mineralization rates of the organic layer were positively correlated with N₂O emissions and negatively correlated with CH₄ uptake, whereas soil CO₂ emissions were positively correlated with heterotrophic respiration in the uppermost mineral soil layer. The most important abiotic factor influencing C and N trace gas fluxes was soil moisture, while the influence of soil temperature on trace gas exchange rates was high only in autumn.     

Xylitol production by genetically modified industrial strain of <Emphasis Type="Italic">Saccharomyces cerevisiae</Emphasis> using glycerol as co-substrate

Xylitol is commercially used in chewing gum and dental care products as a low calorie sweetener having medicinal properties. Industrial yeast strain of S. cerevisiae was genetically modified to overexpress an endogenous aldose reductase gene GRE3 and a xylose transporter gene SUT1 for the production of xylitol. The recombinant strain (XP-RTK) carried the expression cassettes of both the genes and the G418 resistance marker cassette KanMX integrated into the genome of S. cerevisiae. Short segments from the 5′ and 3′ delta regions of the Ty1 retrotransposons were used as homology regions for integration of the cassettes. Xylitol production by the industrial recombinant strain was evaluated using hemicellulosic hydrolysate of the corn cob with glucose as the cosubstrate. The recombinant strain XP-RTK showed significantly higher xylitol productivity (212 mg L^?1 h^?1) over the control strain XP (81 mg L^?1 h^?1). Glucose was successfully replaced by glycerol as a co-substrate for xylitol production by S. cerevisiae. Strain XP-RTK showed the highest xylitol productivity of 318.6 mg L^?1 h^?1 and titre of 47 g L^?1 of xylitol at 12 g L^?1 initial DCW using glycerol as cosubstrate. The amount of glycerol consumed per amount of xylitol produced (0.47 mol mol^?1) was significantly lower than glucose (23.7 mol mol^?1). Fermentation strategies such as cell recycle and use of the industrial nitrogen sources were demonstrated using hemicellulosic hydrolysate for xylitol production.     

Exploring <Emphasis Type="Italic">in vitro</Emphasis> germplasm conservation options for sugarcane (<Emphasis Type="Italic">Saccharum</Emphasis> spp. hybrids) in South Africa

In vitro plantlets of sugarcane cultivar NCo310 were maintained in slow growth conditions at both 18 and 24°C and on four semi-solid media: SG1—Murashige and Skoog (MS) salts and vitamins with 20 g L^?1 sucrose, SG2—½ MS with 10 g L^?1 sucrose, SG3—MS with 20 g L^?1 sucrose and 1 mg L^?1 abscisic acid (ABA), and SG4—½ MS with 10 g L^?1 sucrose and 1 mg L^?1 ABA. After 8, 12, 24, 36, and 48 mo shoot multiplication rates were recorded, shoots were removed from storage and subcultured every 2 wk on SG1 with 0.015 mg L^?1 kinetin and 0.1 mg L^?1 benzyl aminopurine for 2 mo. At 18°C, all media supported storage for 48 mo with subculturing every 12 mo. Shoot multiplication post-retrieval was significantly higher on the SG2 medium compared with the non-stored control (362 ± 84 and 126 ± 26 shoots per recovered shoot after 2 mo, respectively). In addition, shoots could be maintained for 48 mo on SG2 medium with one subculture without compromising post-storage multiplication ability. At 24°C, storage on all four media supported recovery and multiplication of shoots for 8 mo and only SG2 medium facilitated survival for 12 mo. There was no advantage to incorporating ABA into the storage media, regardless of the temperature and storage time. Cryopreservation of cultivar NCo376 in vitro-derived shoot meristems using the V-cryo-plate method demonstrated that the sucrose concentration in the loading solution (0.8–1.8 M) had no significant effect on survival of the meristems, which ranged from 41.7 ± 4.8 to 69.4 ± 10%.     

<Emphasis Type="Italic">In vitro</Emphasis> sucrose concentration influences microtuber production and diosgenin content in white yam (<Emphasis Type="Italic">Dioscorea rotundata</Emphasis> Poir)

Dioscorea spp. is an important food crop in many countries and the source of the phytochemical diosgenin. Efficient microtuber production could provide source materials for farm-planting stock, for food markets, and for the production of high-diosgenin-producing cultivars. The first step in this study was optimizing the plant growth regulators for plantlet production, followed by a study of the effects of sucrose concentration on microtuber induction and diosgenin production. Significantly, more shoots (3.5) were produced at 4.65 μM (1 mg L^?1) kinetin (KIN), longer shoots (4.1 cm) were obtained at 2.46 μM (0.5 mg L^?1) indole-3-butyric acid (IBA), and root number (3.9) was significantly higher at 5.38 μM (1 mg L^?1) naphthalene acetic acid (NAA) than in other treatments. Increased sucrose concentrations in the optimized growth medium with 4.65 μM KIN and 5.38 μM NAA had significant effects on microtuber production (p < 0.01) and diosgenin content (p < 0.05). The most microtubers (6.2) were obtained with 100 g L^?1 sucrose, while those on 80 g L^?1 sucrose were the heaviest (0.7 g) and longest (7.4 mm). Microtubers formed in medium with 80 g L^?1 sucrose had significantly higher diosgenin content (3.64% [w/w]) than those in other sucrose treatments (< 2%) and was similar to that of field-grown parent tubers (3.79%). This result indicates an important role for sucrose in both microtuber growth and diosgenin production. Medium containing 4.65 μM KIN and 5.38 μM NAA is recommended for plantlet production, and medium containing 80 g L^?1 sucrose is recommended for microtuber and diosgenin production.     

Production and optimization of poly-γ-glutamic acid by Bacillus subtilis BL53 isolated from the Amazonian environment

The aims of this research were to screen and characterize a new microbial source of γ-PGA, to optimize aspects of culture conditions and medium composition using central composite design and response surface methodologies. The influence of bioreactor stirring rates on the production of γ-PGA was also investigated and the oxygen volumetric mass transfer coefficients (k _La) were established. The most productive strain was identified by 16S rDNA analysis as Bacillus subtilis, and its γ-PGA production in rotatory shaker was threefold increased under optimized conditions (37 °C, pH 6.9, and 1.22 mM Zn²⁺), compared to conventional medium. In bioreactor, the γ-PGA production was further increased, reaching 17 g l^?1, 70 % higher than shaker cultures. γ-PGA production showed high dependency on oxygen transfer. At k _La of 210 h^?1, the cultivation time could be reduced to 48 h, about 50 % of the time required for operations at k _La 55 h^?1.     

Sediment microstructure and resuspension behavior depend on each other

The critical shear stress of resuspension and rates of erosion for cohesive and loosely structured sediments must be obtained by direct measurements since there is no theoretical calculation. An in situ experiment on sediment resuspension was performed in a shallow lake (Langer See, NE Germany; area = 1.27 km², z_max = 3.8 m) in summer 2006 using a hydrodynamically calibrated erosion chamber (Ø 20 cm). Shear velocity (u*) was incrementally increased in 11 steps (0–2.19 cm s^?1) to initiate resuspension events. Entrainment rates (E) of suspended particulate matter (E_SPM), total P (E_TP), chlorophyll a (E_Chl a), and soluble reactive P (E_SRP) were determined by mass balance. Two subsequent critical u* (0.53 cm s^?1 and 1.48 cm s^?1) support the ‘two-layered bed’ model of a fluffy surface aggregate layer (freshly deposited phytodetritus prone to resuspension) and an underlying more consolidated biostabilised layer. Patterns in E_SPM (2–106 g m^?2 h^?1), E_TP (11–532 mg m^?2 h^?1), and E_Chl a (3–24 μg m^?2 h^?1) revealed a sediment surface maximum of TP and Chl a and their theoretical vertical logarithmic decrease within 4 mm sediment depth, the maximum thickness of sediment layer entrained. The advective E_SRP flux (17 mg m^?2 h^?1) was 43 times higher than the diffusive SRP flux (0.4 mg m^?2 h^?1). The TP and Chl a micro-profiles suggest that cohesive sediment bed formation is a function of both settling (fluff) and consolidation (biostabilisation). Thus, sediment microstructure and resuspension behavior depend on each other.