Genetic differentiation among European whitefish ecotypes based on microsatellite data

The amount of genetic differentiation at DNA microsatellite loci in European whitefish (Coregonus lavaretus) was assessed among ecotypes, populations and run-timing types. The magnitude of genetic changes potentially caused by hatchery broodstock rearing were also compared with those observed in corresponding natural populations. A total of 35 populations were studied, including 33 Coregonus lavaretus populations and two samples of Coregonus peled. Five of the six whitefish ecotypes in Finland were represented within C. lavaretus populations. Genetic diversity among C. lavaretus populations proved to be high compared to two C. peled populations. The genetic D(A) distance between these two species was as high as 0.86. The genetic differentiation among ecotypes was generally low and thus gives support for the hypothesis of one native European whitefish species in Scandinavia. Among the ecotypes the northern, large sparsely-rakered, bottom-dwelling whitefish was most unique. Thus, observed genetic differences in quantitative traits have either developed independently of phylogenetic lineages, or have mixed and later changed according to environments and selection pressures. Overall genetic distances between the anadromous whitefish populations along the Finnish coast, especially in the Bothnian Bay area, were small. Populations of this area have been heavily influenced by human activities, and they also have the highest probability of mixing by natural means. In two cases, the Rivers Iijoki and Tornionjoki, statistically significant genetic differences could be observed between summer- and autumn-run spawning-time types. Wild populations had slightly higher allelic diversity than hatchery-reared populations of corresponding rivers. Although some reduction in genetic diversity during hatchery rearing is possible, it is an important aid in maintaining endangered populations.     

Effect of groundwater depth on riparian plant diversity along riverside-desert gradients in the Tarim River

AimsRiparian plant diversity is sensitive to changes in groundwater in arid regions. However, little is known about how plant diversity responds to changes in environment along riverside-desert gradients in riparian ecosystem. Our objectives were to (i) identify riparian plant diversity along riverside-desert gradients in Tarim desert riparian forests, (ii) analyze the impact of environment variables on plant diversity, (iii) determine the optimum groundwater depth for different plant life-forms.     

Coral microbial communities, zooxanthellae and mucus along gradients of seawater depth and coastal pollution

The high incidence of coral disease in shallow coastal marine environments suggests seawater depth and coastal pollution have an impact on the microbial communities inhabiting healthy coral tissues. A study was undertaken to determine how bacterial communities inhabiting tissues of the coral Montastraea annularis change at 5 m, 10 m and 20 m water depth in varying proximity to the urban centre and seaport of Willemstad, Cura?ao, Netherlands Antilles. Analyses of terminal restriction fragment length polymorphisms (TRFLP) of 16S rRNA gene sequences show significant differences in bacterial communities of polluted and control localities only at the shallowest seawater depth. Furthermore, distinct differences in bacterial communities were found with increasing water depth. Comparisons of TRFLP peaks with sequenced clone libraries indicate the black band disease cyanobacterium clone CD1C11 is common and most abundant on healthy corals in less than 10 m water depth. Similarly, sequences belonging to a previously unrecognized group of likely phototrophic bacteria, herein referred to as CAB-I, were also more common in shallow water. To assess the influence of environmental and physiologic factors on bacterial community structure, canonical correspondence analysis was performed using explanatory variables associated with: (i) light availability; (ii) seawater pollution; (iii) coral mucus composition; (iv) the community structure of symbiotic algae; and (v) the photosynthetic activity of symbiotic algae. Eleven per cent of the variation in bacterial communities was accounted for by covariation with these variables; the most important being photosynthetically active radiation (sunlight) and the coral uptake of sewage-derived compounds as recorded by the delta(15)N of coral tissue.     

Parallel evolution of lake whitefish dwarf ecotypes in association with limnological features of their adaptive landscape

Sympatric fish populations observed in many north temperate lakes are among the best models to study the processes of population divergence and adaptive radiation. Despite considerable research on such systems, little is known about the associations between ecological conditions and the extent of ecotypic divergence. In this study, we examined the biotic and abiotic properties of postglacial lakes in which lake whitefish, Coregonus clupeaformis, occur as a derived dwarf ecotype in sympatry with an ancestral normal ecotype. We compared 19 limnological variables between two groups of lakes known from previous studies to harbour sympatric dwarf and normal ecotypes with high and low levels of phenotypic and genetic differentiation respectively. We found clear environmental differences between the two lake groups. Namely, oxygen was the most discriminant variable, where lakes harbouring the most divergent populations were characterized by the greatest hypolimnetic oxygen depletion. These lakes also had lower zooplankton densities and a narrower distribution of zooplantonic prey length. These results suggest that the highest differentiation between sympatric ecotypes occurs in lakes with reduced habitat and prey availability that could increase competition for resources. This in turns supports the hypothesis that parallelism in the extent of phenotypic divergence among sympatric whitefish ecotypes is associated with parallelism in adaptive landscape in terms of differences in limnological characteristics, as well as availability and structure of the zooplanktonic community.     

Genetically based phenotype-environment association for swimming behavior in lake whitefish ecotypes (Coregonus clupeaformis Mitchill)

Abstract.— Studies of phenotype-environment associations in adaptive radiation have focused largely on morphological traits related to resource-based phenotypic differences. The genetic basis of adaptive behaviors implicated in population divergence remains poorly understood, as few studies have tested the hypothesis of behavioral phenotype-environment associations. We provide evidence of a phenotype-environment association for differential adaptive swimming behaviors through experiments conducted on dwarf, normal, and hybrid lake whitefish ( Coregonus clupeaformis ). Highly significant differences were observed for depth selection, directional changes, and burst swimming, implicating a genetic basis for these behaviors. Hybrid crosses revealed that depth selection is under additive genetic control, while dominance effects were suggested for directional changes and burst swimming. Estimates for the genetic basis of behavioral differentiation from an animal model were consistent with these observations. Comparative estimates of behavioral differentiation ( Q _ST) against neutral expectations ( F _ST) revealed pronounced departures from neutral expectations in all three behavioral phenotypes, consistent with the hypothesis that directional selection has driven the divergence of behavior in dwarf and normal lake whitefish ecotypes.     

Patterns of diversity, depth range and body size among pelagic fishes along a gradient of depth

Studies of geographical patterns of diversity have focused largely on compiling and analysing data to evaluate alternative hypotheses for the near‐universal decrease in species richness from the equator to the poles. Valuable insights into the mechanisms that promote diversity can come from studies of other patterns, such as variation in species distributions with elevation in terrestrial systems or with depth in marine systems. To obtain such insights, we analysed and interpreted data on species diversity, depth of occurrence and body size of pelagic fishes along an oceanic depth gradient. We used a database on pelagic marine fishes native to the north‐east Pacific Ocean between 40°N and 50°N. We used data from the Pacific Rim Fisheries Program that were obtained from commercial, management and scientific surveys between 1999 and 2000. Depth of occurrence and maximum body length were used to assess the distributions of 409 species of pelagic fishes along a depth gradient from 0 to 8000 m. A presence–absence matrix was used to classify the depth range of each species into 100‐m intervals. Atmar & Patterson's (1995 ) software was used to quantify the degree of nestedness of species distributions. Pelagic fish species diversity decreased steeply with increasing depth; diversity peaked at less than 200 m and more than half of the species had mean depths of occurrence between 0 and 300 m. The distribution of species showed a very strong nested subset pattern along the depth gradient. Whereas species with narrow ranges were generally restricted to shallow waters, wide‐ranging species occurred from near the surface to great depths. The relationship between maximum body size and mean depth range differed between teleost and elasmobranch fishes: being positive for teleosts, but negative for elasmobranches. Results support hypotheses that some combination of high productivity and warm temperature promote high species diversity, and reject those that would attribute the pattern of species richness to the mid‐domain effect, habitat area, or environmental constancy. The data provided a clear example of Rapoport's rule, a negative correlation between average depth range and species diversity.     

Phytoplankton distribution along trophic gradients within and among reservoirs in Catalonia (Spain)

1. Longitudinal gradients in the epilimnetic waters of stratified reservoirs provide a useful database to study changing environmental conditions. The spatial distribution, assemblage structure and specific adaptations of phytoplankton assemblages can be analysed along these gradients over short time scales. 2. Four reservoirs with a similar typology, located along an altitudinal gradient in the same eco‐region, were sampled along their longitudinal axes. In total, 19 sampling stations provided a trophic spectrum, ranging from oligo‐mesotrophy to hypertrophy, which was quantified by calculating the trophic state index of each sampling station in the four reservoirs. 3. Several patterns in phytoplankton assemblage structure were detected. Total chlorophyll‐a (Chl‐a), biovolume, abundance and the relative biomass contribution of the main algal groups (chlorophytes, cyanobacteria, cryptophytes and diatoms) were highly correlated with their location along the trophic gradient. 4. We also adopted the functional classification of Reynolds et al. (2002) : this effectively summarized differences among phytoplankton assemblages under varying resource‐limiting combinations, especially nutrients and underwater light climate. 5. In terms of relationships with the trophic gradient, diatoms and cyanobacteria exhibited significant opposing trends in both their relative chlorophyll contribution to total Chl‐a and biovolume. Chlorophytes were more abundant at an intermediate position along the trophic spectrum. 6. The identified patterns are consistent with models of self‐organization of phytoplankton assemblages. In particular, light availability was a strong determinant of size and shape diversity, especially in hypertrophic conditions, where ‘R‐strategist’, needle shaped species, dominated the system. In contrast, under decreased availability of nutrients and higher light extinction coefficients (K_d), the system was co‐dominated by C‐ and S‐strategist species, having shapes with a higher surface/volume ratio.     

Intergenomic epistasis causes asynchronous hatch times in whitefish hybrids,but only when parental ecotypes differ

Support for the theory of ecological speciation requires evidence for ecological divergence between species which directly or indirectly causes reproductive isolation. This study investigates effects of ecological vs. genetic disparity of parental species on the presence of endogenous selection (deformation and mortality rates) and potential sources of exogenous selection (growth rates and hatch timing) on hybrids. Hybrid embryonic development is analysed in a common‐garden full‐sib cross of three species belonging to two different ecotypes within the Coregonus lavaretus species flock in the central Alpine region of Europe. Although hatch timing was similar across the three species, embryonic growth rates and egg sizes differed between ecotypes. This led to a mismatch between embryonic growth rate and egg size in hybrid crosses that reveals epistasis between the maternal and embryonic genomes and transgressive hatch times that were asynchronous with control crosses. A strong constraint of egg size to embryo size at late development was also evident. We argue that this demonstrates potential for coadaptation of a maternal trait (egg size) with offspring growth rate to be an important source of selection against hybridization between ecotypes with different egg sizes. Implications for the measurement and quantification of early life‐history traits affected by this additive relationship, such as hatch day and larval size, are also discussed.     

Latitudinal and depth gradients in marine predation pressure

Aim There is a general paradigm that marine predation pressure increases towards the tropics and decreases with depth. However, data demonstrating global trends are generally lacking. Rhynchonelliform brachiopods inhabit all the oceans and often survive shell‐crushing predator attacks. We investigate shell repair in brachiopods across a range of Southern Hemisphere and tropical Northern Hemisphere latitudes and depths. Location The Southern Hemisphere and tropical Northern Hemisphere. Methods We analysed the frequency of shell repair in 112 bulk samples, over 70% of which showed traces of shell damage and repair. Results The pattern of shell repair frequency (RF) was more complicated than the anticipated increase with decreasing latitude, with low levels at both polar and tropical sites but high levels at temperate latitudes. This pattern is only evident, however, in shallow water assemblages; and there is no latitudinal trend in water depths greater than 200 m, where shell RF is systematically low. There was a significant logarithmic relationship between RF and depth. Low polar repair rates reflect reduced predation pressure, directly supporting the global paradigm. Low rates in the tropics appears counter to the paradigm. However, tropical brachiopods are generally very small (micromorphic) in shallow water and below the minimum size at which damage is recorded anywhere. Main conclusions Predation pressure decreased logarithmically with depth. At shallow depths (< 200 m) RF showed its highest levels in the mid temperate latitudes with decreasing frequency towards both the tropics and the poles. Low levels of shell repair at high latitudes are likely to be due to a lack of crushing predators, but in the tropics it is suggested that the low frequency is a result of the small size of tropical brachiopods. We hypothesize that micromorphy in this region may be an outcome of high predation pressure.     

Variation among populations of Clarkia Unguiculata (Onagraceae) along altitudinal and latitudinal gradients

We investigated phenotypic variation in 15 traits in greenhouse-grown plants from 16 populations of Clarkia unguiculata from three elevational habitats and six latitudinal transects. Populations from the lowest and highest elevations were geographically and ecologically marginal within the species' range. We (1) describe patterns of trait variation with elevation and latitude; (2) compare latitutidinal variation between marginal and central areas of the species' range; and (3) compare patterns of variation within C. unguiculata to interspecific patterns within the genus. Although there was some evidence that traits varied clinally (i.e., increased/decreased monotonically) along environmental gradients, interaction effects between altitude and latitude dominated patterns of variation. For most traits, latitudinal trends at the low-elevation margin of the species' range differed from trends at mid- and high-elevation areas. Based on interspecific comparisons, populations at the hotter, more arid ends of both environmental gradients were expected to have rapid development, small flowers and vegetative size, low levels of herkogamy and protandry, and high rates of gas exchange. Instead, we found that while some traits were correlated with one gradient in the expected way (e.g., development time with elevation, gas-exchange physiology with latitude), all traits were not consistently associated with each other along both gradients, and intraspecific patterns of variation differed from interspecific patterns.     

Fish distributions along depth gradients of a sea mountain range conform to the mid‐domain effect

Species richness often peaks in the middle of bounded geographic domains (e.g. latitude, altitude or depth). Hump‐shaped richness distributions may be due to deterministic processes, such as adaptations to environmental variation. Alternatively, such distributions might also be due to stochastic process. The mid‐domain effect (MDE) posits that hump‐shaped richness distributions arise when species ranges are randomly arranged within the limits of the domain. We tested whether the MDE could account for the richness of bottom‐associated (demersal) fishes between 200 and 800 m on the Chatham Rise, New Zealand. We quantified the depth distributions of 59 fish species from 1891 research trawl catches made between 1991 and 2007. Results showed a broad plateau of high species richness near the centre of the domain (between 300 and 700 m), which was consistent with expectations of the MDE. Further, empirical species richness was better explained statistically by predictions of the MDE than models incorporating additional abiotic predictor variables. Our results deviated from previous studies that identified a greater richness of fishes in warmer, shallower depths with higher primary production. However, our study was conducted entirely below the euphotic zone, at depths where gradients are relatively weak, suggesting that support for the mid‐domain effect may increase across oceanic domains characterised by weak environmental gradients.     

Divergent selection along elevational gradients promotes genetic and phenotypic disparities among small mammal populations

Species distributed along mountain slopes, facing contrasting habitats in short geographic scale, are of particular interest to test how ecologically based divergent selection promotes phenotypic and genetic disparities as well as to assess isolation‐by‐environment mechanisms. Here, we conduct the first broad comparative study of phenotypic variation along elevational gradients, integrating a large array of ecological predictors and disentangling population genetic driver processes. The skull form of nine ecologically distinct species distributed over a large altitudinal range (100–4200 m) was compared to assess whether phenotypic divergence is a common phenomenon in small mammals and whether it shows parallel patterns. We also investigated the relative contribution of biotic (competition and predation) and abiotic parameters on phenotypic divergence via mixed models. Finally, we assessed the population genetic structure of a rodent species (Niviventer confucianus) via analysis of molecular variance and F_ST along three mountain slopes and tested the isolation‐by‐environment hypothesis using Mantel test and redundancy analysis. We found a consistent phenotypic divergence and marked genetic structure along elevational gradients; however, the species showed mixed patterns of size and skull shape trends across mountain zones. Individuals living at lower altitudes differed greatly in both phenotype and genotype from those living at high elevations, while middle‐elevation individuals showed more intermediate forms. The ecological parameters associated with phenotypic divergence along elevation gradients are partly related to species' ecological and evolutionary constraints. Fossorial and solitary animals are mainly affected by climatic factors, while terrestrial and more gregarious species are influenced by biotic and abiotic parameters. A novel finding of our study is that predator richness emerged as an important factor associated with the intraspecific diversification of the mammalian skull along elevational gradients, a previously overlooked parameter. Population genetic structure was mainly driven by environmental heterogeneity along mountain slopes, with no or a week spatial effect, fitting the isolation‐by‐environment scenario. Our study highlights the strong and multifaceted effects of heterogeneous steep habitats and ecologically based divergent selective forces in small mammal populations.     

Spatial structure of avifauna along urban-rural gradients

We examined the pattern of species composition of breeding birds along urban-rural gradients in the Osaka Prefecture, western Japan. We recorded the proportion of nine types of land-use and the presence/absence of each of 76 breeding birds in 5 km square quadrats on a map of the Prefecture. The proportion of woodland and farmland which increased from urban to rural areas were two major enviornmental gradients according to Principal Component Analysis of the nine types of land-use. Ordination by Canonical Correspondence Analysis (CCA) showed that the breeding bird distribution differentiated along the two major clines, woodland and farmland. The avifauna changed successively along these environmental gradients. There were no discrete boundaries of the distribution of bird species groups. We tentatively classified five groups of quadrats on the ordination plane of the sample score. The geographic position of these five groups on a map preserved the environmental gradient, but showed that water (seashore and river) was a stronger influence on bird species composition than land-use pattern. Although the diversity of land-use seemed to raise species richness in the third group, the less diverse, woodland-rich group contained as many species as the third group. Four groups of bird species, and one group in which species occurred in more than 90% of the quadrats, were classified in the CCA-ordination plane. The occurrence of these bird groups correlated with land-use; the first group with woodland area, the second with scatter woodland, the third with farmland and the fourth with seashore.     

Differentiation in seed germination among populations of Capsicum annuum along a latitudinal gradient in Mexico

Toinvestigate variation in germination capability of wild Capsicumannuum seeds, the effects of light, fluctuating temperature,gibberellic acid (GA), soaking and sulfuric acid were analyzed in samples from14 populations from northwest Mexico. Germination was inhibited by darkness inall populations studied. Darkness inhibition of germination was overcome byfluctuating temperature and GA, factors which also increased germinationpercentage but not germination rate. Soaking treatments did not significantlyincrease germination of C. annuum seeds, while sulfuricacid treatments had negative effects on the process. Populations showed highvariation in germination response in all treatments, except for continuousdarkness. Principal component analysis differentiated some populations withhighgermination percentage and slow germination rate. Such differences did notcorrelate with climatic variables from collection sites. Given the variation ingermination patterns observed, some of these totally contrasting, we have to becautious when considering the results of studies based on a single wildpopulation.     

A study of trophic niche partitioning between larval populations of reproductively isolated whitefish (Coregonus sp.) ecotypes

The abundance, spatio-temporal distribution, and feeding of larvae were compared from two reproductively isolated dwarf and normal ecotypes of whitefish ( Coregonus sp.) to test the hypothesis that larval ecotypes should reduce competition by using different resources. Contrary to a priori expectations, trophic niche partitioning between larval populations was much less pronounced than previously reported for the adult stages of fish ecotypes, presumably due to the lack of competition acting at this stage, and related to non-limiting food resources. Because this study was conducted in a single year and a single lake, we cannot however, strictly rule out the possibility that resource-based competition and resulting niche partitioning may occur at the larval stage in these species complexes. Nevertheless, this suggests for the first time, that resource-based selection at the larval stage may be relatively unimportant compared to that occurring at older life-history stages in driving the divergence and the development of reproductive isolation in sympatric fish ecotypes.     

Sphagnum distribution patterns along environmental gradients in Bulgaria

Abstract

The distribution patterns of 18 Sphagnum species along base-richness and altitudinal gradients were studied in Bulgarian treeless wetlands which are noteworthy because of the edge-of-range occurrence of many mire species including Sphagnum. Of 483 spring and mire sites studied, 202 samples contained some Sphagnum species. The most common species were S. subsecundum (n=85), S. platyphyllum (46), S. contortum (41), S. teres (40) and S. capillifolium (26). The significance of Sphagnum responses to environmental gradients was tested by comparing generalized additive models against the null model. Many Sphagnum species displayed a significant response to the altitudinal gradient. Several species were clearly linked to low or to high altitudes, but the realized niche of other species was wide with respect to altitude. Most species significantly responded to water pH, both above and below the timberline. The same result was obtained for water conductivity below the timberline, whereas only a few species had a significant response to conductivity above the timberline. The highest water conductivity under which Sphagnum species occurred was 280 μS cm^?1. Sphagnum contortum was the species occupying the mires with the highest mineral content. On the contrary, Sphagnum warnstorfii, one of the most calcitolerant species in many regions of Europe, often occurred in extremely mineral-poor mires above the timberline. Some other Sphagnum species growing in mineral-rich mires below the timberline, also inhabited extremely mineral-poor mires above the timberline. This could be explained by adaptation to local conditions during long-term isolation on mineral-poor bedrock or by changed competition pressure.     

Eelgrass, Zostera marina, growth along depth gradients: upper boundaries of the variation as a powerful predictive tool

1200 measurements of eelgrass ( Zostera marina ) biomass, shoot density and cover along 19 depth gradients in Øresund, located between Denmark and Sweden, were analysed to characterise growth of eelgrass in relation to depth. The large data set allowed analyses of boundaries of distribution as well as of average trends. Natural variability is large in shallow water where populations are disturbed by wave action and other physical parameters. Models based on average values, therefore, did not adequately describe growth regulation by resources, and only explained a minor part (up to 30%) of the overall variation in data. In contrast, boundary functions, which describe the upper bounds of distributions, focus on the variation produced by the ultimately growth-regulating resource, and therefore provide models with high predictive power. An exponential model explained up to 90% of the variation in upper bounds of eelgrass shoot density as a function of depth and indicated that shoot density was ultimately regulated by light availability. The boundary functions demonstrated that eelgrass shoot density, biomass and cover followed markedly different patterns as functions of depth and were affected differently by the factors governing their distribution. In addition, boundary functions revealed informative spatial structures in data and illustrated whether a given general trend was caused by changes in maximum values, minimum values or both. For example, upper and lower boundaries of biomass-shoot density relations changed markedly with depth, demonstrating depth-related changes in intraspecific succession and competition patterns. Boundary functions are therefore suggested as a promising tool for analysing ultimate regulating factors of distribution and growth of organisms when large data sets are available.