The community matrix in three species community models

The explicit function of the community matrix of a three dimensional Lotka-Volterra model is delineated by a set of necessary and sufficient conditions for a positive equilibrium to be asymptotically stable. In the special case that the community matrix is quasi weakly diagonally dominant, it is shown that a positive determinant for the community matrix is not only necessary but is also sufficient for stability. The results are specific to three dimensional models and do not extend to communities of dimension greater than three.     

Is a community still a community? Reviewing definitions of key terms in community ecology

Community ecology is an inherently complicated field, confounded by the conflicting use of fundamental terms. Nearly two decades ago, Fauth et al. (1996) demonstrated that imprecise language led to the virtual synonymy of important terms and so attempted to clearly define four keywords in community ecology; “community,” “assemblage,” “guild,” and “ensemble”. We revisit Fauth et al.'s conclusion and discuss how the use of these terms has changed over time since their review. An updated analysis of term definition from a selection of popular ecological textbooks suggests that definitions have drifted away from those encountered pre‐1996, and slightly disagreed with results from a survey of 100 ecology professionals (comprising of academic professors, nonacademic PhDs, graduate and undergraduate biology students). Results suggest that confusion about these terms is still widespread in ecology. We conclude with clear suggestions for definitions of each term to be adopted hereafter to provide greater cohesion among research groups.     

The autophagy community

There are various definitions of community. A definition that I found in one of my dictionaries is the following: “A social, religious, occupational, or other group sharing common characteristics or interests and perceived or perceiving itself as distinct in some respect from the larger society within which it exists.” Thus, I think it is fair to say that there is a worldwide autophagy community. That is, there is a group of researchers (our occupation), whose members share an interest in autophagy (our common characteristic), and that group is distinct from the larger society (I do not want to begin describing the many ways this applies). But do we feel like a community, and do we need a community? I suggest that a community is indeed beneficial, and I propose one mechanism for enhancing the development of the autophagy community.     

The autophagy community

There are various definitions of community. A definition that I found in one of my dictionaries is the following: “A social, religious, occupational, or other group sharing common characteristics or interests and perceived or perceiving itself as distinct in some respect from the larger society within which it exists.” Thus, I think it is fair to say that there is a worldwide autophagy community. That is, there is a group of researchers (our occupation), whose members share an interest in autophagy (our common characteristic), and that group is distinct from the larger society (I do not want to begin describing the many ways this applies). But do we feel like a community, and do we need a community? I suggest that a community is indeed beneficial, and I propose one mechanism for enhancing the development of the autophagy community.     

MPowering ecologists: community assembly tools for community assembly rules

Null model tests of presence–absence data (‘NMTPAs’) provide important tools for inferring effects of competition, facilitation, habitat filtering, and other ecological processes from observational data. Many NMTPAs have been developed, but they often yield conflicting conclusions when applied to the same data. Type I and II error rates, size, power, robustness and bias provide important criteria for assessing which tests are valid, but these criteria need to be evaluated contingent on the sample size, null hypothesis of interest, and assumptions that are appropriate for the data set that is being analyzed. In this paper, we confirm that this is the case using the software MPower, evaluating the validity of NMTPAs contingent on the null hypothesis being tested, assumptions that can be made, and sample size. Evaluating the validity of NMTPAs contingent on these factors is important towards ensuring that reliable inferences are drawn from observational data about the processes controlling community assembly.     

Evaluation of subsampling efforts in estimating community indices and community structures

Even though subsampling can minimize the research efforts needed to deal with numerous specimens, the accuracy of bioassessment and community analysis can be affected according to subsampled individuals. In this study, the effects of subsampling on community indices, the parameters of the species abundance distributions (SADs) and ordination based on communities were evaluated using benthic macroinvertebrates from three different stream pollution levels: less, intermediately, and heavily polluted. The values of the community indices and the parameters of the SADs were clearly different according to the differences in the pollution levels, regardless of subsampling efforts. Detrended correspondence analysis was applied to characterize similarities between the subsamples with different individuals based on community indices and the parameters of the SADs. A self-organizing map was used to characterize the community similarities and properties of the subsamples, differentiating the subsamples from their original datasets. Finally, our results revealed that the effects of subsampling were reflected differently in different indices, parameters, and ordinations of communities at different pollution levels, suggesting that subsample size should be determined differently at different pollution levels depending on the objectives of the study. However, if only one subsample size is to be used for simplicity and to reduce the cost of aquatic ecosystem health monitoring and assessment, then we recommend at least 400 individuals as the subsample size. At least 800 individuals should be subsampled for biodiversity studies.     

Trade-offs in community properties through time in a desert rodent community

Resource limitation represents an important constraint on ecological communities, which restricts the total abundance, biomass, and community energy flux a given community can support. However, the exact relationship among these three measures of biological activity remains unclear. Here we use a simple framework that links abundance and biomass with an energetic constraint. Under constant energetic availability, it is expected that changes in abundance and biomass can result from shifts in the distribution of individual masses. We test these predictions using long-term data from a desert rodent community. Total energy use for the community has not changed directionally for 25 years, but species composition has. As a result, the average body size has decreased by almost 50%, and average abundance has doubled. These results lend support to the idea of resource limitation on desert rodent communities and demonstrate that systems are able to maintain community energy flux in the face of environmental change, through changes in composition and structure.     

The community of an individual: implications for the community concept

The concept of the ecological community is examined from the perspective of its criteria and domain. The multiple definitions and uses of this concept indicate a variety of scales and approaches. In this paper, a core definition of the minimal criteria and domain is proposed. Using those criteria, a model of the ecological community is developed based on a focal individual and its interactions with other individuals. In order to increase the scale of the domain of this approach, additional criteria are required. This model is used to explore characteristics of the minimum domain and larger scales of the community concept. The structure that emerges emphasizes context dependency and the potential for indeterminacy for most types of interactions. A prominent historical argument, the nature of boundaries between communities, has no relevance in this model.     

The community ecology of pathogens: coinfection,coexistence and community composition

Disease and community ecology share conceptual and theoretical lineages, and there has been a resurgence of interest in strengthening links between these fields. Building on recent syntheses focused on the effects of host community composition on single pathogen systems, we examine pathogen (microparasite) communities using a stochastic metacommunity model as a starting point to bridge community and disease ecology perspectives. Such models incorporate the effects of core community processes, such as ecological drift, selection and dispersal, but have not been extended to incorporate host–pathogen interactions, such as immunosuppression or synergistic mortality, that are central to disease ecology. We use a two‐pathogen susceptible‐infected (SI) model to fill these gaps in the metacommunity approach; however, SI models can be intractable for examining species‐diverse, spatially structured systems. By placing disease into a framework developed for community ecology, our synthesis highlights areas ripe for progress, including a theoretical framework that incorporates host dynamics, spatial structuring and evolutionary processes, as well as the data needed to test the predictions of such a model. Our synthesis points the way for this framework and demonstrates that a deeper understanding of pathogen community dynamics will emerge from approaches working at the interface of disease and community ecology.     

Phenotypic variation in nurse traits and community feedbacks define an alpine community

Much is known about facilitation, but virtually nothing about the underlying genetic and evolutionary consequences of this important interaction. We assessed the potential of phenotypic differences in facilitative effects of a foundation species to determine the composition of an Alpine community in Arizona. Two phenotypes of Geum rossii occur along a gradient of disturbance, with 'tight' competitive cushions in stable conditions and 'loose' facilitative cushions in disturbed conditions. A common-garden study suggested that field-based traits may have a genetic basis. Field experiments showed that the reproductive fitness of G. rossii cushions decreased with increasing facilitation. Finally, using a dual-lattice model we showed that including the cost and benefit of facilitation may contribute to the co-occurrence of genotypes with contrasting facilitative effects. Our results indicate that changes in community composition due to phenotypic differences in facilitative effects of a foundation species may in turn affect selective pressures on the foundation species.     

Predictability in community dynamics

The coupling between community composition and climate change spans a gradient from no lags to strong lags. The no‐lag hypothesis is the foundation of many ecophysiological models, correlative species distribution modelling and climate reconstruction approaches. Simple lag hypotheses have become prominent in disequilibrium ecology, proposing that communities track climate change following a fixed function or with a time delay. However, more complex dynamics are possible and may lead to memory effects and alternate unstable states. We develop graphical and analytic methods for assessing these scenarios and show that these dynamics can appear in even simple models. The overall implications are that (1) complex community dynamics may be common and (2) detailed knowledge of past climate change and community states will often be necessary yet sometimes insufficient to make predictions of a community's future state.     

Simulation of community patterns

Programs are described for the simulation of coenoplanes-mathematically defined, two-dimensional community patterns characterized by scattered and broadly overlapping Gaussian reponse surfaces for species populations. Field data have been studied to derive a set of assumptions regarding realistic properties of coenoplanes and ways in which some of these properties should be variable. Additional assumptions define properties of samples and sets of samples taken from coenoplanes. The programs thus provide a basis for tests of different ordination techniques and effects of characteristics of sample sets on these.     

Optimising human community sizes

We examine community longevity as a function of group size in three historical, small scale agricultural samples. Community sizes of 50, 150 and 500 are disproportionately more common than other sizes; they also have greater longevity. These values mirror the natural layerings in hunter-gatherer societies and contemporary personal networks. In addition, a religious ideology seems to play an important role in allowing larger communities to maintain greater cohesion for longer than a strictly secular ideology does. The differences in optimal community size may reflect the demands of different ecologies, economies and social contexts, but, as yet, we have no explanation as to why these numbers seem to function socially so much more effectively than other values.