Ontogeny of diving behaviour in the Australian sea lion: trials of adolescence in a late bloomer

1. Foraging behaviours of the Australian sea lion (Neophoca cinerea) reflect an animal working hard to exploit benthic habitats. Lactating females demonstrate almost continuous diving, maximize bottom time, exhibit elevated field metabolism and frequently exceed their calculated aerobic dive limit. Given that larger animals have disproportionately greater diving capabilities, we wanted to examine how pups and juveniles forage successfully. 2. Time/depth recorders were deployed on pups, juveniles and adult females at Seal Bay Conservation Park, Kangaroo Island, South Australia. Ten different mother/pup pairs were equipped at three stages of development (6, 15 and 23 months) to record the diving behaviours of 51 (nine instruments failed) animals. 3. Dive depth and duration increased with age. However, development was slow. At 6 months, pups demonstrated minimal diving activity and the mean depth for 23-month-old juveniles was only 44 +/- 4 m, or 62% of adult mean depth. 4. Although pups and juveniles did not reach adult depths or durations, dive records for young sea lions indicate benthic diving with mean bottom times (2.0 +/- 0.2 min) similar to those of females (2.1 +/- 0.2 min). This was accomplished by spending higher proportions of each dive and total time at sea on or near the bottom than adults. Immature sea lions also spent a higher percentage of time at sea diving. 5. Juveniles may have to work harder because they are weaned before reaching full diving capability. For benthic foragers, reduced diving ability limits available foraging habitat. Furthermore, as juveniles appear to operate close to their physiological maximum, they would have a difficult time increasing foraging effort in response to reductions in prey. Although benthic prey are less influenced by seasonal fluctuations and oceanographic perturbations than epipelagic prey, demersal fishery trawls may impact juvenile survival by disrupting habitat and removing larger size classes of prey. These issues may be an important factor as to why the Australian sea lion population is currently at risk.     

DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea)

The analysis of apex predator diet has the ability to deliver valuable insights into ecosystem health, and the potential impacts a predator might have on commercially relevant species. The Australian sea lion (Neophoca cinerea) is an endemic apex predator and one of the world's most endangered pinnipeds. Given that prey availability is vital to the survival of top predators, this study set out to understand what dietary information DNA metabarcoding could yield from 36 sea lion scats collected across 1,500 km of its distribution in southwest Western Australia. A combination of PCR assays were designed to target a variety of potential sea lion prey, including mammals, fish, crustaceans, cephalopods, and birds. Over 1.2 million metabarcodes identified six classes from three phyla, together representing over 80 taxa. The results confirm that the Australian sea lion is a wide‐ranging opportunistic predator that consumes an array of mainly demersal fauna. Further, the important commercial species Sepioteuthis australis (southern calamari squid) and Panulirus cygnus (western rock lobster) were detected, but were present in <25% of samples. Some of the taxa identified, such as fish, sharks and rays, clarify previous knowledge of sea lion prey, and some, such as eel taxa and two gastropod species, represent new dietary insights. Even with modest sample sizes, a spatial analysis of taxa and operational taxonomic units found within the scat shows significant differences in diet between many of the sample locations and identifies the primary taxa that are driving this variance. This study provides new insights into the diet of this endangered predator and confirms the efficacy of DNA metabarcoding of scat as a noninvasive tool to more broadly define regional biodiversity.     

Improving the accuracy of population size estimates for burrow‐nesting seabirds

Seabird numbers can change rapidly as a result of environmental processes, both natural and anthropogenic. Informed management and conservation of seabirds requires accurate and precise monitoring of population size. However, for burrow‐nesting species this is rarely achieved due to spatial and temporal heterogeneity in burrow occupancy. Here, we describe a novel method for deriving more accurate population size estimates that employs mark‐recapture methods to correct for unknown variation in nest occupancy throughout a breeding season. We apply it to estimate breeding numbers of a colonial, burrowing seabird, the Little Penguin Eudyptula minor, on the Summerland Peninsula, Phillip Island, Australia. Estimates of active burrow numbers during the September 2008 to February 2009 breeding season were adjusted to numbers of breeding birds based on burrow occupation and modelled population demographics at six, fortnightly monitored reference sites. The population was estimated to be 26 100 (95% CI: 21 100–31 100) and 28 400 (23 800–33 000) breeding Penguins in two temporally separated surveys within one breeding season. We demonstrate using simulation that the method is robust to variation in burrow occupancy throughout the breeding season, providing consistent and more accurate estimates of population size. The advantage of using the corrected method is that confidence intervals will include the true population size. Confidence limits widened as burrow occupancy declined, reflecting the increased uncertainty as larger adjustments for low burrow occupancy were required. In contrast, the uncorrected method that uses burrow occupancy alone as a measure of breeding numbers was inconsistent and significantly underestimated population size across much of the breeding season. Although requiring considerably more survey effort, the corrected approach provides a more accurate means for monitoring population changes in colonially breeding animals while collecting demographic data that can help diagnose the drivers of population change.     

Short‐term survival of Steller sea lion (Eumetopias jubatus) pups: Investigating the effect of health status on survival

We estimated survival probabilities for Steller sea lion (Eumetopias jubatus) pups from 3 wk to 6 wk old and from 6 wk to 1 yr at three rookeries in southeastern Alaska. We also investigated the effect of mass, body condition, health variables, and the genetic origin on 3–6 wk survival. Survival differed substantially among rookeries and between sexes, with survival lowest at Hazy Islands, intermediate at White Sisters, and highest at Graves Rocks and survival lower for males than females. Body mass, body condition, and hematocrit were positively related to survival and blood %H₂O and haptoglobin level (for females; no relationship for males) were negatively related to survival. Taking predictor variables collectively, sea lion pups at Hazy Islands, which had the lowest survival probability, had the lowest mass, hematocrit, and hemoglobin, and had high levels of blood %H₂O, and hookworm infection. Values from Graves Rocks, which had the highest survival, were the opposite of those from Hazy Island (e.g., high mass, body condition, hematocrit, and hemoglobin), while those from White Sisters (intermediate survival) had varying means (e.g., high hematocrit and hemoglobin and low hookworms, but also low body condition); these patterns suggest that physiological factors potentially underlie rookery differences in survival.     

Adult mosquito trap sensitivity for detecting exotic mosquito incursions and eradication: a study using EVS traps and the Australian southern saltmarsh mosquito, Aedes camptorhynchus

Adult mosquito traps are commonly used in biosecurity surveillance for the detection of exotic mosquito incursions or for the demonstration of elimination. However, traps are typically deployed without knowledge of how many are required for detecting differing numbers of the target species. The aim of this study was to determine the sensitivity (i.e., detection probability) provided by carbon dioxide-baited EVS traps for adult female Australian southern saltmarsh mosquitoes, Aedes camptorhynchus, a recent biosecurity problem for New Zealand. A mark-release-recapture study of three concurrently released cohorts (sized 56, 296, and 960), recaptured over four days with a matrix of 20 traps, was conducted in Australia. The detection probability for different numbers of traps and cohorts of different sizes was determined by random sampling of recapture data. Detection probability ranged from approximately 0.3 for a single trap detecting a cohort of 56 mosquitoes to 1.0 (certainty of detection) when seven or more traps were used. For detection of adult Ae. camptorhynchus around a known source, a matrix of traps provides a strong probability of detection. Conversely, the use of single traps deployed over very large areas to detect mosquitoes of unknown entry pathway is unlikely to be successful. These findings have implications for the design of mosquito surveillance for biosecurity.     

Population ecology of the velvet gecko,Oedura lesueurii in south eastern Australia: Implications for the persistence of an endangered snake

Abstract Ecological specialization, such as major dependence upon a single‐prey species, can render a predator taxon vulnerable to extinction. In such cases, understanding the population dynamics of that prey type is important for conserving the predator that relies upon it. In eastern Australia, the endangered broad‐headed snake Hoplocephalus bungaroides feeds largely on velvet geckos (Oedura lesueurii). We studied growth, longevity and reproduction in a population of velvet geckos in Morton National Park in south‐eastern Australia. We marked 458 individual geckos over a 3‐year period (1992–1995) and made yearly visits to field sites from 1995–2006 to recapture marked individuals. Female geckos grew larger than males, and produced their first clutch at age 4 years. Males can mature at 2 years, but male–male combat for females probably forces males to delay reproduction until age 3 years. Females lay a single clutch of two eggs in communal nests in November, and up to 22 females deposited eggs in a single nest. Egg hatching success was high (100%), and juveniles had high survival (76%) during their first 6 months of life. Velvet geckos are long‐lived, and the mean age of marked animals recaptured after 1995 was 6.1 years (males) and 8.4 years (females). Older females (7.5–9.5 years) were all gravid when last recaptured. Like other temperate‐climate gekkonids, O. lesueurii has a ‘slow’ life history, and population viability could be threatened by any factors that increase egg or adult mortality. Two such factors – the removal of ‘bush rocks’ for urban gardens, and the overgrowth of rock outcrops by vegetation – could render small gecko populations vulnerable to extinction. In turn, the reliance of predatory broad‐headed snakes on this slow‐growing lizard species may increase its vulnerability to extinction.     

Projecting demographic responses to climate change: adult and juvenile survival respond differently to direct and indirect effects of weather in a passerine population

Few studies have quantitatively projected changes in demography in response to climate change, yet doing so can provide important insights into the processes that may lead to population declines and changes in species distributions. Using a long‐term mark‐recapture data set, we examined the influence of multiple direct and indirect effects of weather on adult and juvenile survival for a population of Song Sparrows (Melospiza melodia) in California. We found evidence for a positive, direct effect of winter temperature on adult survival, and a positive, indirect effect of prior rainy season precipitation on juvenile survival, which was consistent with an effect of precipitation on food availability during the breeding season. We used these relationships, and climate projections of significantly warmer and slightly drier winter weather by the year 2100, to project a significant increase in mean adult survival (12–17%) and a slight decrease in mean juvenile survival (4–6%) under the B1 and A2 climate change scenarios. Together with results from previous studies on seasonal fecundity and postfledging survival in this population, we integrated these results in a population model and projected increases in the population growth rate under both climate change scenarios. Our results underscore the importance of considering multiple, direct, and indirect effects of weather throughout the annual cycle, as well as differences in the responses of each life stage to climate change. Projecting demographic responses to climate change can identify not only how populations will be affected by climate change but also indicate the demographic process(es) and specific mechanisms that may be responsible. This information can, in turn, inform climate change adaptation plans, help prioritize future research, and identify where limited conservation resources will be most effectively and efficiently spent.     

Translocation of the Eastern Bristlebird 2: applying principles to two case studies

Summary The Eastern Bristlebird (Dasyornis brachypterus) is an endangered endemic passerine of south‐eastern Australia. The re‐establishment of extirpated populations through translocation was identified as a key action in New South Wales to address the threats to this species associated with habitat fragmentation and widespread and frequent fire. At Jervis Bay during 2003–2005, 50 birds were translocated from Bherwerre Peninsula to Beecroft Peninsula. In the Illawarra in 2008, 50 birds were translocated from Barren Grounds Nature Reserve to Cataract. At Jervis Bay, monitoring indicated that after 7 years, (i) there was no detectable impact on the source population from the removal of birds and (ii) the count at Beecroft Peninsula was 94 birds, with dispersal up to 6.3 km from the release point. In the Illawarra, (i) the source population was recovering 3 years post‐removal and (ii) the maximum count at Cataract was 15 birds after 3.5 years, including evidence of breeding, and after 3 years, the maximum dispersal was 7 km from the release point. Both translocations adhered to five key principles as follows. (i) Feasibility analysis prior to each project was favourable. (ii) For 17 pre‐stated criteria for success, 14 and 10, respectively, were met for Jervis Bay and Illawarra. (iii) Financial accountability was achieved with detailed statements showing budgets of $201k and $92k, respectively, for Jervis Bay and Illawarra. (iv) Ecological research was incorporated into both projects. (v) The results of each project are progressively being published. The re‐introduction at Jervis Bay has succeeded, and we are optimistic about the Illawarra re‐introduction.     

Variation in behavioral responses of the South American sea lion to tourism disturbance: Implications for tourism management

Due to the highly predictable patterns of occupancy on land, pinnipeds are one of the main marine resources observed by tourists, which, in turn, could strongly perturb their behavior. We analyzed the behavioral responses of the South American sea lion (Otaria byronia) to the presence of tourists and its variation according to temporal (2012 vs. 2013 austral summer months), spatial (breeding vs. nonbreeding sites of the colony), and age/sex class (adult males vs. subadult males vs. females) factors, and determined the relationship between the degree of responses by sea lions and the distance of the vessel to the colony, visitation time, and tourist behavior. We recorded 1,232 boat visits during 2012 and 2013. Subadult males were the age/sex class most affected in the breeding site, followed by adult females at the nonbreeding site. More disturbing conduct by tourists, longer visitation time, and vessels closer to the colony caused greater responses by sea lions. The established minimum distance from the colony is not enforced, generating an adverse response by sea lions. We recommend the development of management plans with the local coastal communities to decrease the impact of ecotourism on the species and enhance the sustainability of this industry.     

Field‐readable alphanumeric flags are valuable markers for shorebirds: use of double‐marking to identify cases of misidentification

Implicit assumptions for most mark‐recapture studies are that individuals do not lose their markers and all observed markers are correctly recorded. If these assumptions are violated, e.g., due to loss or extreme wear of markers, estimates of population size and vital rates will be biased. Double‐marking experiments have been widely used to estimate rates of marker loss and adjust for associated bias, and we extended this approach to estimate rates of recording errors. We double‐marked 309 Piping Plovers (Charadrius melodus) with unique combinations of color bands and alphanumeric flags and used multi‐state mark recapture models to estimate the frequency with which plovers were misidentified. Observers were twice as likely to read and report an invalid color‐band combination (2.4% of the time) as an invalid alphanumeric code (1.0%). Observers failed to read matching band combinations or alphanumeric flag codes 4.5% of the time. Unlike previous band resighting studies, use of two resightable markers allowed us to identify when resighting errors resulted in reports of combinations or codes that were valid, but still incorrect; our results suggest this may be a largely unappreciated problem in mark‐resight studies. Field‐readable alphanumeric flags offer a promising auxiliary marker for identifying and potentially adjusting for false‐positive resighting errors that may otherwise bias demographic estimates.     

Life history of the endangered Japanese striped loach,Cobitis kaibarai (Cypriniformes: Cobitidae), with special reference to its reproductive ecology and the influence of creek reshapings on its population density

In recent years, the biodiversity of freshwater fishes has been markedly decreasing worldwide because of anthropogenic activities. The Japanese striped loach, Cobitis kaibarai (Cypriniformes: Cobitidae), is a primary freshwater fish endemic to northern Kyushu, Japan. This species is designated as endangered IB class in the Red List by the Japan Ministry of the Environment. Its population is decreasing, possibly because of habitat loss and degradation. To conserve C. kaibarai populations, information on its basic ecology is necessary; nonetheless, its detailed life history and reproductive ecology have yet to be clarified. In this study, the authors conducted monthly capture–mark–recapture surveys and periodical observations to investigate the life history, spawning sites and season of C. kaibarai. They also evaluated the influence of creek reshaping (concrete revetment) on the C. kaibarai population in Saga Plain, northern Kyushu. Between 2015 and 2018, more individuals were captured during winter than summer. The average body width of females peaked in early June and small immatures were confirmed from July. Some individuals were captured across 15 or more months after their initial marking. In the survey of reproductive sites, eggs and larvae of C. kaibarai were found in shallow areas in mid-June; these were temporarily submerged following the increase in water level from early June. Therefore, C. kaibarai spawns in shallow areas during this season. Based on the capture–mark–recapture surveys, the estimated population density of C. kaibarai significantly decreased in a census site that had undergone creek reshaping, which contrasted with the results in a control site, where no significant difference was detected. The standard length of C. kaibarai increased following creek reshaping, suggesting that the proportion of C. kaibarai postponing spawning had increased, possibly because of degradation of spawning environments. The results of this study provide important ecological knowledge for the conservation of C. kaibarai and emphasize the importance of shallow waters for floodplain spawners.     

Testing the regeneration niche hypothesis with Gesneriaceae (tribe Sinningiae) in Brazil: Implications for the conservation of rare species

The germination requirements of sexually reproducing plants are regulated by environmental factors such as temperature. Those factors acting at the germination phase are part of the regeneration niche, which is fundamental in the processes that contribute to habitat suitability and geographic distribution. We tested the hypothesis that rarity is associated with regeneration niche in three species of plants in the family Gesneriaceae (tribe Sinningieae), Sinningia rupicola (Mart.) Wiehler, Paliavana sericiflora Benth and Sinningia allagophylla (Mart.) Wiehler, which vary in their distribution and habitat specificity but share a small zone of sympatry in rocky fields south of Belo Horizonte in Minas Gerais, Brazil. The regeneration niche was tested using a seed germination experiment under controlled light conditions at seven fixed temperatures (10–40°C at 5°C intervals). Each of the three species germinated differently at the various temperatures. The species with the smallest geographic range, S. rupicola, also had the most restricted germination: germination peaked at 15°C when relatively few seeds germinated (45%), and even fewer germinated at other temperatures. The regeneration niche was wider in P. sericiflora and wider still in S. allagophylla, with germination greater than 90% between 15–25°C and greater than 80% between 15–30°C, respectively. Our germination results provide qualified support for the hypothesis of correlation of the regeneration niche with geographic distribution of related plant taxa, with important conservation implications for rare and endangered species.     

Climate‐dependent costs of reproduction: Survival and fecundity costs decline with length of the growing season and summer temperature

Costs of reproduction are expected to vary with environmental conditions thus influencing selection on life‐history traits. Yet, the effects of habitat conditions and climate on trade‐offs among fitness components remain poorly understood. For 2–5 years, we quantified costs of experimentally increased reproduction in two populations (coastal long‐season vs. inland short‐season) of two long‐lived orchids that differ in natural reproductive effort (RE; 30 vs. 75% fruit set). In both species, survival costs were found only at the short‐season site, whereas growth and fecundity costs were evident at both sites, and both survival and fecundity costs declined with increasing growing season length and/or summer temperature. The results suggest that the expression of costs of reproduction depend on the local climate, and that climate warming could result in selection favouring increased RE in both study species.     

The carriage of Candida species on the dorsal surface of the tongue: the correlation with the dental, periodontal and prosthetic status in elderly subjects

Objectives: To screen the carriage status of Candida species, especially Candida albicans and its genotype in an epidemiological survey and to investigate its correlation with the dental, periodontal and prosthetic status of healthy elderly subjects. Materials and methods: Microbiological samples were collected from the dorsum of the tongue of 366 subjects, aged 75, and cultured on CHROMagar medium. The carriage status of Candida spp. and the distribution of C. albicans genotypes by a polymerase chain reaction (PCR) method were analysed and compared with the dental, periodontal and prosthetic status of the subjects. Results: A high carriage rate (68.6%) of Candida spp. and the predominant species of C. albicans (72.1%) were found in this study. The prevalence, density and multi‐species of Candida spp. were significantly related to the presence of a dental prosthesis. In C. albicans, genotype A predominated (56.4%) and genotype D showed a higher prevalence (12.5%) than previous reports. When comparing Candida spp. carriage with the oral status, significant positive correlations were found with the presence of any dental prosthesis, missing teeth, the number of retained roots and the percentage of sites showing bleeding on probing (BOP), while significant negative correlations were found with the number of teeth present, sound and filled teeth. Conclusions: Candida carriage on the dorsum of the tongue in healthy elderly is significantly associated with the dental, periodontal and prosthetic status, especially the presence of a dental prosthesis. As the complexity of the prosthesis being worn increased, the relative risk of Candida carriage and the numbers and multi‐species of Candida increased accordingly.     

Analysing the effect of movement on local survival: a new method with an application to a spatially structured population of the arboreal gecko Gehyra variegata

Mortality during movement between habitat patches is the most obvious cost of dispersal, but rarely it has been demonstrated empirically. An approach is presented, which uses capture–mark–recapture data of an arboreal gecko species to determine the effect of individual movement on local survival in a spatially structured population. Because capture–mark–recapture data are widely available for a range of animal species, it should be possible to extend their application to other species. The method is based on the assumption that the tendency to be a territorial animal or to be a floating animal is fixed during the study period. The advantage of our approach is that only one additional parameter has to be estimated for describing movement risks. We further tested the power of our approach to detect an association of movement and mortality with simulated capture histories. The study revealed a strong negative effect of movement on local survival. Hence, animals that moved more often between trees had a lower survival rate. Interestingly, the mean movement rate for males was significantly higher than for females, which should lead to a biased sex ratio towards females in the population. As there was an even sex ratio in the population, we discuss not mutually exclusive explanations for this finding like differences in emigration rates between sexes, differences in survival rates between sexes, or a skewed sex ratio in offspring.