Effects of different disturbance types on butterflyfish communities of Australia’s Great Barrier Reef

The effects of disturbances on coral reef fishes have been extensively documented but most studies have relied on opportunistic sampling following single events. Few studies have the spatial and temporal extent to directly compare the effects of multiple disturbances over a large geographic scale. Here, benthic communities and butterflyfishes on 47 reefs of the Great Barrier Reef were surveyed annually to examine their responses to physical disturbances (cyclones and storms) and/or biological disturbances (bleaching, outbreaks of crown-of-thorns starfish and white syndrome disease). The effects on benthic and butterflyfish communities varied among reefs depending on the structure and geographical setting of each community, on the size and type of disturbance, and on the disturbance history of that reef. There was considerable variability in the response of butterflyfishes to different disturbances: physical disturbances (occurring with or without biological disturbances) produced substantial declines in abundance, whilst biological disturbances occurring on their own did not. Butterflyfishes with the narrowest feeding preferences, such as obligate corallivores, were always the species most affected. The response of generalist feeders varied with the extent of damage. Wholesale changes to the butterflyfish community were only recorded where structural complexity of reefs was drastically reduced. The observed effects of disturbances on butterflyfishes coupled with predictions of increased frequency and intensity of disturbances sound a dire warning for the future of butterflyfish communities in particular and reef fish communities in general.     

Temporal consistency in background mortality of four dominant coral taxa along Australia’s Great Barrier Reef

Studies on the population and community dynamics of scleractinian corals typically focus on catastrophic mortality associated with acute disturbances (e.g., coral bleaching and outbreaks of crown-of-thorns starfish), though corals are subject to high levels of background mortality and injuries caused by routine and chronic processes. This study quantified prevalence (proportion of colonies with injuries) and severity (areal extent of injuries on individual colonies) of background mortality and injuries for four common coral taxa (massive Porites, encrusting Montipora, Acropora hyacinthus and branching Pocillopora) on the Great Barrier Reef, Australia. Sampling was conducted over three consecutive years during which there were no major acute disturbances. A total of 2276 adult colonies were surveyed across 27 sites, within nine reefs and three distinct latitudinal sectors. The prevalence of injuries was very high (>83%) across all four taxa, but highest for Porites (91%) and Montipora (85%). For these taxa (Montipora and Pocillopora), there was also significant temporal and spatial variation in prevalence of partial mortality. The severity of injuries ranged from 3% to more than 80% and varied among coral taxa, but was fairly constant spatially and temporally. This shows that some injuries have considerable longevity and that corals may invest relatively little in regenerating tissue over sites of previous injuries. Inter-colony variation in the severity of injury also had no apparent effect on the realized growth of individual colonies, suggesting that energy diverted to regeneration has a limited bearing on overall energetic allocation, or impacts on other life-history processes (e.g., reproduction) rather than growth. Establishing background levels of injury and regeneration is important for understanding energy investment and life-history consequences for reef-building corals as well as for predicting susceptibility to, and capacity to recover from, acute disturbances.     

Incidence and severity of injuries among juvenile crown-of-thorns starfish on Australia’s Great Barrier Reef

Coral Reefs - Outbreaks of crown-of-thorns starfish (Acanthaster spp.) represent a major threat to coral reef ecosystems throughout the Indo-Pacific, and there is significant interest in whether...     

Improved Coral Population Estimation Reveals Trends at Multiple Scales on Australia’s Great Barrier Reef

The global erosion of biodiversity presents unique challenges for identifying major changes in population dynamics, establishing their causes, and managing and conserving affected ecosystems at broad spatial scales. Adaptive learning approaches connecting different spatial scales through the transfer of hierarchical information are powerful tools to address such challenges. Here, we use a Semi-Parametric Bayesian Hierarchical (SPa-BaH) model to estimate coral cover trajectories using 16 years of a broad-scale survey on Australia’s Great Barrier Reef (GBR). The spatiotemporal variability of coral populations has been considered by separating three-tiered spatial scales and allowing for alternating phases of increasing and decreasing in the estimation of their trajectories. Model estimates revealed coral cover trajectories that were highly variable according to location but that fairly consistently declined at a regional spatial scale. Notwithstanding this general trend, individual reefs within subregions in the central part of the GBR often displayed different trajectory types between sites separated by only a few hundred meters. These coral dynamics were also associated with reduced recovery rates in the Cairns and Swain subregions. Our study highlights the importance of accounting for local variation in coral cover when estimating the spatiotemporal trends in coral cover trajectories, in this case, at the GBR scale. By retaining information at different hierarchical spatial scales, our SPa-BaH model supports better estimation of large-scale coral cover trajectories. The quantitative approaches developed here can also be applied to other species with complex dynamics thereby enhancing estimations of their trajectories at local- and larger-scales and options for their management.     

Fine-scale time series surveys reveal new insights into spatio-temporal trends in coral cover (2002–2018), of a coral reef on the Southern Great Barrier Reef

Reef monitoring programmes often focus on limited sites, predominantly on reef slope areas, which do not capture compositional variability across zones. This study assessed spatial and temporal changes in hard coral cover at four hierarchical spatial scales. ~ 55,000, geo-referenced photoquadrats were collected annually from 2002 to 2018 and analysed using artificial intelligence for 31 sites across reef flat and reef slope zones on Heron Reef, Southern Great Barrier Reef, Australia. Trends in hard coral cover were examined at three spatial scales: (1) “reef scale”, all data; (2) “geomorphic zone scale”—north/south reef slope, inner/outer reef flat; and (3) “site scale”—31 sites. Coral cover trajectories were also examined at: (4) “sub-site scale”—sub-division of sites into 567 sub-sites, to estimate variability in coral cover trajectories via spatial statistical modelling. At reef scale coral cover increased over time to 25.6 ± 0.4 SE % in 2018 but did not recover following disturbances caused by disease (2004–2008), cyclonic conditions (2009) or severe storms (2015) to the observed pre-disturbance level (44.0 ± 0.7 SE %) seen in 2004. At geomorphic zone scale, the reef slope had significantly higher coral cover than the reef flat. Trends of decline and increase were visible in the slope zones, and the southern slope recovered to pre-decline levels. Variable coral cover trends were visible at site scale. Furthermore, sub-site spatial modelling captured eight years of coral recovery that occurred at different times and magnitudes across the four geomorphic zones, effectively estimating variability in the trajectory of the reef’s coral community. Derived spatial predictions for the entire reef show patchy coral recovery, particularly on the southern slope, and that recovery hotspots are distributed across the reef. These findings suggest that to fully understand and interpret coral decline or recovery on a reef, more accurate assessment can be achieved by examining sites distributed within different geomorphic zones to capture variation in exposure, depth and consolidation.

     

Rapid vertical accretion on a ‘young’ shore-detached turbid zone reef: Offshore Paluma Shoals, central Great Barrier Reef, Australia

We report on the age structure and net accretion rates determined for an open water turbid zone reef, known as Offshore Paluma Shoals, located on the inner central Great Barrier Reef. Twenty-eight radiocarbon dates from 5 cores through the reef structure indicate that this reef began growing ~1,700 years ago and that net vertical accretion through the main phase of reef development was rapid (averaging 7.8 mm yr^?1), this despite the reef growing in highly turbid waters. The most rapid growth phases coincided with the accumulation of mud-rich terrigenoclastic sediments within the reef fabric. The study emphasises the capacity of turbid zone reefs to vertically accrete at rates matching or exceeding many clear water reefs despite seemingly detrimental water quality conditions.     

Patterns and trends in two decades of research on Nepal’s mammalian fauna (2000–2019): examining the past for future implications

Nepal is a global biodiversity hotspot, supporting 213 mammal species with diverse habitats across various landscape types, from the lowland Terai to the high Himalayas. Studies of Nepal’s mammalian fauna are not evenly distributed and better understanding of past biases towards some species, research themes and locations can provide better strategic direction for future research investments. Therefore, we reviewed 575 scientific articles on mammals in Nepal, published between 2000 and 2019 and compiled these in March 2020, to examine trends, patterns and gaps, and pave future plans for mammalian research in Nepal. A positive increase in the number of publications (β?=?0.27?±?0.02SD, P?<?0.00) was observed, with a more than threefold increase between 2010 and 2019 compared to 2000–2009 (t?=?? 6.26, df?=?12.21, P?<?0.000). Analysis of these documents revealed that mammalian researches favored large flagship, threatened species of carnivores inside Nepal’s protected area system. Geographically, mammalian research was not uniform in Nepal, as most studies were concentrated in Bagmati Province and in the Terai and Chure region. Baseline surveys and ecological studies were more common types of research, while studies on the impact of climate change and wildlife trade and poaching, are scant, which deserves a future look. While these studies shape current mammalogy in Nepal, studies of small, uncharismatic species, and in areas outside protected areas and other provinces except Bagmati, Lumbini and Province One are severely lacking. The research identified habitat loss, degradation and human-wildlife conflict as the major threats to the survival of mammalian species in Nepal. Therefore, redesigning and strict implementation of policies based on habitat management and human-wildlife co-existence, including other threat mitigation measures, are warranted. To address knowledge gaps, the prioritization of future research and funding should be focused on relatively unexplored research themes and under-researched provinces. This approach will help to re-align the research focus with the current need, and assist to fully understand and effectively conserve the wealth of mammalian diversity that Nepal holds.

     

Cross-shelf differences in the pattern and pace of bioerosion of experimental carbonate substrates exposed for 3 years on the northern Great Barrier Reef, Australia

Patterns of bioerosion of dead corals and rubbles on the northern Great Barrier Reef were studied by using blocks of the massive coral Porites experimentally exposed at six sites, located on an inshore–offshore profile, for 1 year and 3 years. Rates of microbioerosion by microborers, grazing by fish, and macrobioerosion by filter-feeding organisms were simultaneously evaluated using image analysis. Microbioerosion, grazing, and total bioerosion were lower at reefs near the Queensland coast than at the edge of the continental shelf (1.81 kg m⁻² and 6.07 kg m⁻² after 3 years of exposure respectively, for total bioerosion). The opposite pattern was observed for macrobioerosion. Bioaccretion was negligible. These patterns were evident after 1 year of exposure, and became enhanced after 3 years. Microborers were established and were the main agent of bioerosion after 1 year of exposure, and as the principal support for grazing, continued to be the main cause of carbonate loss after 3 years. Full grazing activity and establishment of a mature community of macroborers required more than 1 year of exposure. After 1 year, macroborers and grazers were the second most important agents of bioerosion on both inshore and offshore reefs. However, after 3 years, grazers became the main agents at all sites except at the inshore sites, where macroborers were the principal agents. Because the contribution of microborers, grazers, and macroborers to bioerosion varies in space and time, we suggest that the estimation of reef carbonate budgets need to take in account the activities of all bioerosion agents.     

Correction to: Patterns and trends in two decades of research on Nepal’s mammalian fauna (2000–2019): examining the past for future implications

Biodiversity and Conservation -     

Holocene sea level instability in the southern Great Barrier Reef,Australia: high-precision U–Th dating of fossil microatolls

Three emergent subfossil reef flats from the inshore Keppel Islands, Great Barrier Reef (GBR), Australia, were used to reconstruct relative sea level (RSL). Forty-two high-precision uranium–thorium (U–Th) dates obtained from coral microatolls and coral colonies (2σ age errors from ±8 to 37 yr) in conjunction with elevation surveys provide evidence in support of a nonlinear RSL regression throughout the Holocene. RSL was as least 0.75 m above present from ~6500 to 5500 yr before present (yr BP; where “present” is 1950). Following this highstand, two sites indicated a coeval lowering of RSL of at least 0.4 m from 5500 to 5300 yr BP which was maintained for ~200 yr. After the lowstand, RSL returned to higher levels before a 2000-yr hiatus in reef flat corals after 4600 yr BP at all three sites. A second possible RSL lowering event of ~0.3 m from ~2800 to 1600 yr BP was detected before RSL stabilised ~0.2 m above present levels by 900 yr BP. While the mechanism of the RSL instability is still uncertain, the alignment with previously reported RSL oscillations, rapid global climate changes and mid-Holocene reef “turn-off” on the GBR are discussed.

     

Changes in coral assemblages during an outbreak of Acanthaster planci at Lizard Island, northern Great Barrier Reef (1995–1999)

Population outbreaks of crown-of-thorns starfish (Acanthaster planci L.) represent one of the most significant biological disturbances on tropical coral reefs and have the potential to devastate coral communities, thereby altering the biological and physical structure of reef habitats. This study reports on changes in area cover, species diversity and taxonomic composition of corals during an outbreak of A. planci at Lizard Island, in the northern Great Barrier Reef, Australia. Mean coral cover declined by 28.8% across ten locations studied. However, densities of A. planci, and their effects on local coral assemblages, were very patchy. Declines in coral cover were mostly due to the selective removal of certain coral taxa (mainly Acropora and Pocilloporidae corals); such that the greatest coral loss occurred at locations with highest initial cover of preferred coral prey. Most notably, coral assemblages in back-reef locations were transformed from topographically complex staghorn Acropora-dominated habitats, to relatively depauperate assemblages dominated by alcyonacean soft corals. Although coral loss was greatest among formerly dominant taxa (especially Acropora), effects were sufficiently widespread across different coral taxa, such that overall coral diversity tended to decline. Clearly, moderate outbreaks of A. planci have the potential to greatly alter community structure of coral communities even if they do not devastate live corals. Recovery in this instance is expected to be very rapid given that all coral taxa persisted, and effects were greatest among fast growing corals.     

Coral–macroalgal phase shifts or reef resilience: links with diversity and functional roles of herbivorous fishes on the Great Barrier Reef

Changes from coral to macroalgal dominance following disturbances to corals symbolize the global degradation of coral reefs. The development of effective conservation measures depends on understanding the causes of such phase shifts. The prevailing view that coral–macroalgal phase shifts commonly occur due to insufficient grazing by fishes is based on correlation with overfishing and inferences from models and small-scale experiments rather than on long-term quantitative field studies of fish communities at affected and resilient sites. Consequently, the specific characteristics of herbivorous fish communities that most promote reef resilience under natural conditions are not known, though this information is critical for identifying vulnerable ecosystems. In this study, 11 years of field surveys recorded the development of the most persistent coral–macroalgal phase shift (>7 years) yet observed on Australia’s Great Barrier Reef (GBR). This shift followed extensive coral mortality caused by thermal stress (coral bleaching) and damaging storms. Comparisons with two similar reefs that suffered similar disturbances but recovered relatively rapidly demonstrated that the phase shift occurred despite high abundances of one herbivore functional group (scraping/excavating parrotfishes: Labridae). However, the shift was strongly associated with low fish herbivore diversity and low abundances of algal browsers (predominantly Siganidae) and grazers/detritivores (Acanthuridae), suggesting that one or more of these factors underpin reef resilience and so deserve particular protection. Herbivorous fishes are not harvested on the GBR, and the phase shift was not enhanced by unusually high nutrient levels. This shows that unexploited populations of herbivorous fishes cannot ensure reef resilience even under benign conditions and suggests that reefs could lose resilience under relatively low fishing pressure. Predictions of more severe and widespread coral mortality due to global climate change emphasize the need for more effective identification and protection of ecosystem components that are critical for the prevention of coral reef phase shifts.     

A new species of Numbakullidae Gu?u & Heard, 2002 (Tanaidacea,Peracarida, Crustacea) from?the?Great?Barrier Reef,Australia

A new species of Numbakulla Guţu & Heard, 2002 (Tanaidacea) is described from Heron Island (southern Great Barrier Reef, Queensland) collected during the Census of Coral Reefs Ecosystem (CReefs) program. The new species is the third member of the family and can be recognized by the combination of characters as: length/width ratio of the body, which is 6:7, pereonite 4 longer than the rest, the presence of eyes, a blunt rostrum, antenna article 2 elongated, cheliped carpus with row of inner setae, pereopod 6 carpus with spines, pleopod endopod with denticles.     

Will Coral Islands Maintain Their Growth over the Next Century? A Deterministic Model of Sediment Availability at Lady Elliot Island,Great Barrier Reef

A geomorphic assessment of reef system calcification is conducted for past (3200 Ka to present), present and future (2010–2100) time periods. Reef platform sediment production is estimated at 569 m³ yr⁻¹ using rate laws that express gross community carbonate production as a function of seawater aragonite saturation, community composition and rugosity and incorporating estimates of carbonate removal from the reef system. Key carbonate producers including hard coral, crustose coralline algae and Halimeda are mapped accurately (mean R² = 0.81). Community net production estimates correspond closely to independent census-based estimates made in-situ (R² = 0.86). Reef-scale outputs are compared with historic rates of production generated from (i) radiocarbon evidence of island deposition initiation around 3200 years ago, and (ii) island volume calculated from a high resolution island digital elevation model. Contemporary carbonate production rates appear to be remarkably similar to historical values of 573 m³ yr⁻¹. Anticipated future seawater chemistry parameters associated with an RCP8.5 emissions scenario are employed to model rates of net community calcification for the period 2000–2100 on the basis of an inorganic aragonite precipitation law, under the assumption of constant benthic community character. Simulations indicate that carbonate production will decrease linearly to a level of 118 m³ yr⁻¹ by 2100 and that by 2150 aragonite saturation levels may no longer support the positive budgetary status necessary to sustain island accretion. Novel aspects of this assessment include the development of rate law parameters to realistically represent the variable composition of coral reef benthic carbonate producers, incorporation of three dimensional rugosity of the entire reef platform and the coupling of model outputs with both historical radiocarbon dating evidence and forward hydrochemical projections to conduct an assessment of island evolution through time. By combining several lines of evidence in a deterministic manner, an assessment of changes in carbonate production is carried out that has tangible geomorphic implications for sediment availability and associated island evolution.     

Pseudobacciger cheneyae n. sp. (Digenea: Gymnophalloidea) from Weber’s chromis (Chromis weberi Fowler & Bean) (Perciformes: Pomacentridae) at Lizard Island,Great Barrier Reef,Australia

A new species of digenean, Pseudobacciger cheneyae n. sp., is described from the intestines of Weber’s chromis (Chromis weberi Fowler & Bean) from off Lizard Island, Great Barrier Reef, Australia. This species differs from the three described species of Pseudobacciger Nahhas & Cable, 1964 [P. cablei Madhavi, 1975, P. harengulae Yamaguti, 1938 and P. manteri Nahhas & Cable, 1964] in combinations of the size of the suckers and the length of the caeca. The host of the present species is a perciform (Family Pomacentridae) which contrasts with previous records of the genus which are almost exclusively from clupeiform fishes. The genus Pseudobacciger is presently recognised within the family Faustulidae (Poche, 1926) but phylogenetic analyses of 28S and ITS2 rDNA show that the new species bears no relationship to species of four other faustulid genera (Antorchis Linton, 1911, Bacciger Nicoll, 1924, Paradiscogaster Yamaguti, 1934 and Trigonocryptus Martin, 1958) but that instead it is nested within the Gymnophalloidea (Odhner, 1905) as sister to the Tandanicolidae (Johnston, 1927). This result suggests that the Faustulidae is polyphyletic.     

Two decades of tropical cyclone impacts on North Carolina’s estuarine carbon,nutrient and phytoplankton dynamics: implications for biogeochemical cycling and water quality in a stormier world

Coastal North Carolina (USA) has experienced 35 tropical cyclones over the past 2 decades; the frequency of these events is expected to continue in the foreseeable future. Individual storms had unique and, at times, significant hydrologic, nutrient-, and carbon (C)-loading impacts on biogeochemical cycling and phytoplankton responses in a large estuarine complex, the Pamlico Sound (PS) and Neuse River Estuary (NRE). Major storms caused up to a doubling of annual nitrogen and tripling of phosphorus loading compared to non-storm years; magnitudes of loading depended on storm tracks, forward speed, and precipitation in NRE-PS watersheds. With regard to C cycling, NRE-PS was a sink for atmospheric CO₂ during dry, storm-free years and a significant source of CO₂ in years with at least one storm, although responses were storm-specific. Hurricane Irene (2011) mobilized large amounts of previously-accumulated terrigenous C in the watershed, mainly as dissolved organic carbon, and extreme winds rapidly released CO₂ to the atmosphere. Historic flooding after Hurricanes Joaquin (2015) and Matthew (2016) provided large inputs of C from the watershed, modifying the annual C balance of NRE-PS and leading to sustained CO₂ efflux for months. Storm type affected biogeochemical responses as C-enriched floodwaters enhanced air–water CO₂ exchange during ‘wet’ storms, while CO₂ fluxes during ‘windy’ storms were largely supported by previously-accumulated C. Nutrient loading and flushing jointly influenced spatio-temporal patterns of phytoplankton biomass and composition. These findings suggest the importance of incorporating freshwater discharge and C dynamics in nutrient management strategies for coastal ecosystems likely to experience a stormier future.     

Historical mortality in massive<Emphasis Type="Italic"> Porites</Emphasis> from the central Great Barrier Reef,Australia: evidence for past environmental stress?

>Two hiatuses in coral skeleton growth, associated tissue death and subsequent regrowth, were discovered while dating eight multi-century Porites coral cores collected from the central Great Barrier Reef (GBR), Australia. Cross-dating of characteristic annual luminescent lines visible in the coral core slices under UV-light (Hendy et al. 2003) accurately dated the two events to 1782–85 and 1817 a.d.. Die-off scars were observed in only one core for each event. X-radiographs and photographs taken under UV-light show the pattern of regrowth and the period taken by the coral to recover. Bioerosion, predominately by boring sponges ( Cliona spp.), of the exposed coral surface following the 1782–85 event caused a hiatus of up to 14 years' growth, with the coral taking 7–8 years to reclaim the whole surface contained within the 9-cm-diameter core. Contemporary historical and proxy-climate records indicate that El Niño climatic conditions occurred at the time of both growth discontinuities. Intense luminescence observed in corals growing continuously during the 1817 event suggests that low salinity from river runoff was a contributing factor, analogous environmental conditions to those that were associated with the 1998 bleaching event in the GBR.     

Comparing auditory,visual and vibrotactile cues in individuals with Parkinson’s disease for reducing risk of falling over different types of soil

Introduction: Several researchers have demonstrated the positive benefits of auditory and visual cueing in the gait improvements among individuals with Parkinson’s disease (PD). However, few studies have evaluated the role of vibrotactile cueing when compared to auditory and visual cueing. This paper compares how these stimuli affect the risk of falling while walking on six types of soil (concrete, sand, parquet, broken stone, two types of carpet).

Methods: An instrumented Timed Up and Go (iTUG) test served to evaluate how audio, visual and vibrotactile cueing can affect the risk of falling of elderly. This pilot study proposes 12 participants with PD (67.7?±?10.07?years) and nine age-matched controls (66.8?±?8.0?years). Both groups performed the iTUG test with and without cueing. The cueing frequency was set at 10% above the cadence computed at the lower risk level of falling (walking over the concrete). A computed risk of falling (ROFA) index has been compared to the TUG time (total TUG duration).

Results: The index for evaluating the risk of falling appears to have a good reliability (ICC >?0.88) in this pilot study. In addition, the minimal detectable change (MDC) suggests that the proposed index could be more sensitive to the risk of falling variation compared to the TUG time. Moreover, while using the cueing, observed results suggest a significant decrease in the computed risk of falling compared to ‘without cueing’ for most of types of soil, especially for deformable soils, which can lead to falls.

Conclusion: When compared to other cueing, it seems that audio could be a better neurofeedback for reducing the risk of falling over different walking surfaces, which represent important risk factors for persons with gait disorder or lost functional autonomy.