Phylogenomic relationships of bioluminescent elateroids define the ‘lampyroid’ clade with clicking Sinopyrophoridae as its earliest member

Bioluminescence has been hypothesized as aposematic signalling, intersexual communication and a predatory strategy, but origins and relationships among bioluminescent beetles have been contentious. We reconstruct the phylogeny of the bioluminescent elateroid beetles (i.e. Elateridae, Lampyridae, Phengodidae and Rhagophthalmidae), analysing genomic data of Sinopyrophorus Bi & Li, and in light of our phylogenetic results, we erect Sinopyrophoridae Bi & Li, stat.n . as a clicking elaterid‐like sister group of the soft‐bodied bioluminescent elateroid beetles, that is, Lampyridae, Phengodidae and Rhagophthalmidae. We suggest a single origin of bioluminescence for these four families, designated as the ‘lampyroid clade’, and examine the origins of bioluminescence in the terminal lineages of click beetles (Elateridae). The soft‐bodied bioluminescent lineages originated from the fully sclerotized elateroids as a derived clade with clicking Sinopyrophorus and Elateridae as their serial sister groups. This relationship indicates that the bioluminescent soft‐bodied elateroids are modified click beetles. We assume that bioluminescence was not present in the most recent common ancestor of Elateridae and the lampyroid clade and it evolved among this group with some delay, at the latest in the mid‐Cretaceous period, presumably in eastern Laurasia. The delimitation and internal structure of the elaterid‐lampyroid clade provides a phylogenetic framework for further studies on the genomic variation underlying the evolution of bioluminescence.     

Have ladybird beetles and whiteflies co-existed for at least 40 Mya?

The beetle family Coccinellidae is rarely recorded from fossils. Most of the records come from the nineteenth and beginning of the twentieth century. A complete list of Coccinellidae records from Baltic amber is presented and discussed. Extensive literature research provided a surprising conclusion that not a single species of Coccinellidae has been formally described from Baltic amber till now. The first two species of ladybird beetles from Eocene Baltic amber are described and placed in the genus Serangium, namely S. twardowskii sp. nov. and S. gedanicum sp. nov. Their phylogenetic placement in the subfamily Microweiseinae is provided. A key to the fossil species of Serangium is given. Extant representatives of the genus are distributed mainly in tropical areas of Asia and Oceania, and are specialised predators of whiteflies. Current discovery shows that during the Middle Eocene, the genus Serangium was distributed wider in the Northern Hemisphere and the evolution of these ladybird beetles was probably influenced by the evolution of whiteflies which are also found in the Baltic amber.     

First discovery of fossil Coloninae in Cretaceous Burmese amber (Coleoptera,Staphylinoidea, Leiodidae)

Coloninae is a tiny and distinctive subfamily of the highly diverse family Leiodidae (round fungus and small carrion beetles). Although only one leiodid fossil is known from the Mesozoic, its taxonomic position and classification are doubtful. We describe the first definitive Coloninae fossil, Colon burmiticum Yamamoto sp. nov., from Upper Cretaceous amber of Myanmar. Our finding sheds light on the origin and early evolutionary history of this peculiar genus and its subfamily.     

Primates and Plesiadapiformes from Cos (Eocene; Quercy,France)

A new fauna has been collected from a fissure filling named Cos in the Quercy region, southwestern France. It includes four primate species and a plesiadapiform. The cercamoniine adapiform Protoadapis andrei Godinot and Vidalenc, nov. sp., is represented by material that adds to our knowledge of the genus Protoadapis for the upper canine, upper molars and other morphological details. It appears more primitive than P. brachyrhynchus from the Old Quercy Collections. The other cercamoniine Pronycticebus cosensis Godinot and Vidalenc, nov. sp., offers insight on intraspecific variations and other details of the genus. Both species suggest a bushy evolution within these genera. Two teeth document the presence of a third cercamoniine, Anchomomys sp. indet. The new microchoerid Quercyloris eloisae Godinot and Vidalenc, nov. gen., nov. sp., has very primitive characters and seems to document a primitive member of the Pseudoloris clade. A poorly documented paromomyid plesiadapiform is distinct enough to be named Arcius moniquae Godinot and Vidalenc, nov. sp. It represents the first discovery of a plesiadapiform in the Quercy fossil record and makes a link with paromomyids surviving until the late Lutetian European Mammal Paleogene MP 13 reference level. The primates indicate a broad age interval between MP 10 (late Ypresian) and MP 12 (mid-Lutetian). The identification of the same species of Pronycticebus and of the new genus in the Vielase fauna suggests more precisely the MP 10–MP 11 (late Ypresian–early Lutetian) time interval.     

The oldest ionoscopiform from China sheds new light on the early evolution of halecomorph fishes

The Halecomorphi are a major subdivision of the ray-finned fishes. Although living halecomorphs are represented solely by the freshwater bowfin, Amia calva, this clade has a rich fossil history, and the resolution of interrelationships among extinct members is central to the problem of understanding the origin of the Teleostei, the largest clade of extant vertebrates. The Ionoscopiformes are extinct marine halecomorphs that were inferred to have originated in the Late Jurassic of Europe, and subsequently dispersed to the Early Cretaceous of the New World. Here, we report the discovery of a new ionoscopiform, Robustichthys luopingensis gen. et sp. nov., based on eight well-preserved specimens from the Anisian (242–247 Ma), Middle Triassic marine deposits of Luoping, eastern Yunnan Province, China. The new species documents the oldest known ionoscopiform, extending the stratigraphic range of this group by approximately 90 Ma, and the geographical distribution of this group into the Middle Triassic of South China, a part of eastern Palaeotethys Ocean. These new data provide a minimum estimate for the split of Ionoscopiformes from its sister clade Amiiformes and shed new light on the origin of ionoscopiform fishes.     

Une nouvelle espèce de Podocnemis (Pleurodira, Podocnemididae) provenant du Néogène de la formation Solimões, Acre, Brésil

A Neogene turtle from Brasil is described. It represents the first find of a new species close to the extant Podocnemis sextuberculata. Both species constitute a new clade in the genus. The synapomorphies they share and the differences between them are given. P. negrii nov. sp. is the second fossil species of the genus, after P. bassleri from the Neogene of Peru, which constitutes another clade with the extant P. expansa. The relationships between these two clades and the other species of the genus are not determinate.     

Lights out: the evolution of bacterial bioluminescence in Loliginidae

Representatives of several metazoan clades engage in symbiotic interactions with bioluminescent bacteria, but the evolution and maintenance of these interactions remain poorly understood. Uroteuthis is a genus of loliginid squid (Cephalopoda: Loliginidae) characterized by paired ventral photophores (light organs) housing bioluminescent bacteria. While previous phylogenetic studies have suggested that Uroteuthis is closely related to Loliolus, a genus of non-bioluminescent species, this relationship remains unresolved. To illuminate Uroteuthis and Loliolus phylogeny and its implications for the evolution of bioluminescence in Loliginidae, we generated sequences from two mitochondrial genes from Uroteuthis specimens sampled from several sites in the Indian and western Pacific Oceans. We combined these data with data from GenBank, analyzed the concatenated data set using maximum likelihood and Bayesian methods, and reconstructed the evolution of bacterial bioluminescence on the resulting phylogenies. Our analyses support the hypothesis that Uroteuthis is paraphyletic with respect to Loliolus. Furthermore, our reconstructions suggest that the symbiosis between loliginid squid and bioluminescent bacteria evolved once in the ancestor of Loliolini (the clade comprising Uroteuthis and Loliolus), but was subsequently lost in the ancestor of Loliolus. These findings could have profound implications for our understanding of the evolution of symbiotic bioluminescence in squid.     

Evolutionary radiation of an inbreeding haplodiploid beetle lineage (Curculionidae, Scolytinae)

Haplodiploidy is a highly unusual genetic system that has arisen at least 17 times in animals of varying lifestyles, but most of these haplodiploid lineages remain relatively poorly known. In particular, the ecological and genetic circumstances under which haplodiploidy originates have been difficult to resolve. A recent molecular‐phylogenetic study has resolved the phylogenetic position of the haplodiploid clade of scolytine beetles as the sister group of the genus Dryocoetes. Haplodiploid bark beetles are remarkable in that the entire clade of over 1300 species are apparently extreme (sib‐mating) inbreeders, most of which cultivate fungi for food while some attack phloem, twigs or seeds. Here we present a much more detailed molecular‐phylogenetic study of this clade. Using partial sequences of elongation factor 1‐alpha and the mitochondrial small ribosomal subunit (12S), we reconstructed the phylogeny for 48 taxa within the haplodiploid clade, as well as two species of the diplodiploid sister genus Dryocoetes. Results indicate that the genus Ozopemon is the basal lineage of die haplodiploid clade. Since Ozopemon, Dryocoetes, and other outgroups are phloem‐feeding, this strongly suggest that haplodiploidy and inbreeding evolved in a phloem feeding ancestor. Following the divergence of Ozopemon there is a series of extremely short internodes near the base of the clade, suggesting a very rapid rate of diversification in early Miocene (based on fossil evidence and sequence divergence). Among the many substrates for breeding and food resources utilized within this species‐rich clade, the cultivation of yeast‐like ambrosia fungi in tunnels deep into the wood predominates (nearly 90% of the species). The number of transitions to feeding on such fungi was few, possibly only one, and is perhaps an irreversible transition. The habit of feeding on fungi cultured in xylem makes it possible for the beetles to use a great variety of plant taxa. This extreme resource generalism, in conjunction with the colonization advantage conferred by haplodiploidy and inbreeding, may have promoted the rapid diversification of this clade.     

Mesozoic leaf beetles of the tribe Mesolpinini trib. nov. (Coleoptera,Chrysomelidae) from the Lower Cretaceous

This publication is based on recent studies of Lower Cretaceous leaf beetles from the Yixian Formation (Liaoning, China), which are represented by five new species of one new genus Mesolpinus gen. nov. (M. antenattus sp. nov. [type species], M. adapertilis sp. nov., M. angusticollis sp. nov., M. basicollis sp. nov., and M. trapezicollis sp. nov.) assigned to a new tribe, Mesolpinini trib. nov. of the subfamily Chrysomelinae. This tribe, which includes only species from the Jehol biota, is the oldest known group of the family in the fossil record. A key to species of the genus Mesolpinus gen. nov. is provided and the position of the new tribe is discussed. A brief overview of the Mesozoic data on the subfamily Chrysomeloidea is given.     

A New Snake Skull from the Paleocene of Bolivia Sheds Light on the Evolution of Macrostomatans

Macrostomatan snakes, one of the most diverse extant clades of squamates, display an impressive arsenal of cranial features to consume a vast array of preys. In the absence of indisputable fossil representatives of this clade with well-preserved skulls, the mode and timing of these extraordinary morphological novelties remain obscure. Here, we report the discovery of Kataria anisodonta n. gen. n. sp., a macrostomatan snake recovered in the Early Palaeocene locality of Tiupampa, Bolivia. The holotype consists of a partial, minute skull that exhibits a combination of booid and caenophidian characters, being the presence of an anisodont dentition and diastema in the maxilla the most distinctive trait. Phylogenetic analysis places Kataria basal to the Caenophidia+Tropidophiidae, and represents along with bolyeriids a distinctive clade of derived macrostomatans. The discovery of Kataria highlights the morphological diversity in the maxilla among derived macrostomatans, demonstrating the relevance of maxillary transformations in the evolution of this clade. Kataria represents the oldest macrostomatan skull recovered, revealing that the diversification of macrostomatans was well under way in early Tertiary times. This record also reinforces the importance of Gondwanan territories in the history of snakes, not only in the origin of the entire group but also in the evolution of ingroup clades.     

New beetles (Coleoptera) from the terminal Middle Permian of China

New beetles are described from the Middle Permian (Upper Capitanian) locality Yinping (Anhui Province, China): Linicupes yinpinensis gen. et sp. nov. (Permocupedidae), Taldycupes pingi sp. nov. (Taldycupedidae), Archosyne permiana gen. et sp. nov., Chaocoleus limnebius gen. et sp. nov. (Ademosynidae) and Asiocoleopsis hongi sp. nov. (Asiocoleidae); the type material of Dikerocoleus divisus Lin, 1982 from the same type locality is redescribed. Comparison with beetles from the Permian of European Russia shows that Yinping beetles are similar to Late Severodvinian beetles rather than to Early Severodvinian and Urzhumian ones.     

First Triassic record of the beetle family Permocupedidae (Insecta: Coleoptera): a peculiar example of a Lazarus taxon

The first Mesozoic representative of the extinct archostematan beetle family Permocupedidae, Frankencupes ultimus, gen. et sp. nov., is described based on two isolated elytra from the Lower Anisian (Middle Triassic) Röt Formation of Lower Franconia, Germany. The new fossil occurrence extends the range of the family from the Lower Wuchiapingian (Upper Permian) up to the Anisian, and represents a fine example of a Lazarus taxon in the fossil record of beetles.     

New species of bark beetles from the Rovno amber (Insecta: Coleoptera: Scolytidae)

Two new species of bark beetles are described from the Late Eocene Rovno amber. Xylechinus mozolevskae sp. nov. (Hylesininae: Tomicini) is the first fossil representative of this genus, differing from recent species in having large triangular scales along the suture. Taphramites rovnoensis sp. nov. (Scolytinae: Dryocoetini) differs from the closest species, T. gnathotrichus from Baltic amber, in the presence of short thin hairs on the elytra.     

Galtierella biscalithecae nov. gen. et sp., a Late Pennsylvanian endophytic water mold (Peronosporomycetes) from France

A new fossil water mold (Peronosporomycetes), Galtierella biscalithecae nov. gen. et sp., consisting of coenocytic hyphae occurs as an intracellular endophyte in a partially degraded specimen of the reproductive organ Biscalitheca cf. musata (Zygopteridales) from the Upper Pennsylvanian Grand-Croix cherts (Saint-Étienne Basin, France). Some hyphal tips produce small spheres that subsequently develop into ornamented, opaque-walled oogonia; amphigynous antheridia encircle the necks of several immature oogonia. Also present are ovoid structures, which may represent differently shaped oogonia, hyphal swellings, or zoosporangia. Small dome-shaped structures, probably zoospore cysts, are attached to numerous host cell walls. This discovery sheds new light on the morphology and biology of water molds in a Carboniferous ecosystem.     

A new large barn owl (Aves, Strigiformes, Tytonidae) from the Middle Pleistocene of Sicily, Italy, and its taphonomical significance

A new species of Tytonidae, Tyto mourerchauvireae, is described from the Sicilian cave deposits of Spinagallo, Luparello and Marasà, which have yielded a common vertebrate fossil assemblages referred to the early Middle Pleistocene. T. mourerchauvireae nov. sp. shows a pronounced increase in body size compared to other congeneric taxa. It is larger than the extant Tyto alba and the extinct Tyto balearica and Tyto sanctialbani and comparable in size among the Mediterranean taxa only with the extinct Tyto robusta, which differs in some morphological characteristics of the long bones. The insular adaptations of T. mourerchauvireae nov. sp. and the differences from the other forms of the genus Tyto which spread through the Mediterranean area during Neogene and Pleistocene are discussed. The fossil assemblages of the early Middle Pleistocene of Sicily are dominated by extinct giant Gliridae of the genus Leithia and Maltamys; these taxa are regarded as the primary prey items of T. mourerchauvireae nov. sp. The Gliridae remains were analysed microscopically to detect possible modifications of bones and teeth caused by ingestion and digestion processes. This type of analysis, together with the qualitative study of the fossil assemblages, allows to show the taphonomical importance of T. mourerchauvireae nov. sp. as agent of accumulation in such Sicilian fossil assemblages. Incidentally the taxonomic validity of T. robusta is discussed and confirmed.     

Mycobiota associated with the ambrosia beetle Scolytodes unipunctatus (Coleoptera: Curculionidae, Scolytinae)

Ambrosia beetles (Coleoptera: Scolytinae) are associated with strictly entomochoric and mutualistic fungi. We studied the mycobiota associated with Scolytodes unipunctatus, ambrosia beetles that infest Cecropia trees in Central America. Isolates were characterized using morphology and rDNA sequences (ITS region, LSU, and SSU rDNA). Four species are described here: Raffaelea scolytodis sp. nov. (Ophiostomatales), Gondwanamyces scolytodis sp. nov., Custingophora cecropiae sp. nov., and Graphium sp. (Microascales). The genus Custingophora is emended to include Knoxdaviesia anamorphs of Gondwanamyces based on uniformity of DNA sequences and phenotype.     

The earliest fossil record of the extant rove beetle genus Phloeocharis from mid-Cretaceous Kachin amber of northern Myanmar and its biogeographic implications (Coleoptera: Staphylinidae: Phloeocharinae)

Phloeocharis Mannerheim is the largest genus within the problematic rove beetle subfamily Phloeocharinae, with a single extinct and 44 recent species recorded from the Holarctic Region. Until now, the oldest fossil record of Phloeocharis was known from Late Cretaceous (Turonian) amber from New Jersey, USA. Here we describe 2Phloeocharis burmana n. sp. from mid-Cretaceous (Albian–Cenomanian) Kachin amber from northern Myanmar, as the earliest extinct species of this genus. Our finding also sheds light on the biogeography of Phloeocharis, since no recent or extinct species have so far been recorded from the Oriental Region. Furthermore, the discovery of 2P. burmana n. sp. extends the Mesozoic diversity of the phloeocharine rove beetles both taxonomically and morphologically, particularly from Kachin amber.     

Systematics and palaeoecology of middle Toarcian Asteroidea (Echinodermata) from the “Seuil du Poitou”, Western France

Complete, articulated starfish fossils are rare. However, more frequently encountered dissociated skeletal elements (ossicles) permit reliable taxonomic identification, making them a valuable data source for diversity estimates. Nearly 300 asteroid ossicles, collected from the middle Toarcian marls in western France can be assigned to five species. Four species and two genera are described: Comptoniaster vrinensis nov. sp. (Goniasteridae), Poncetaster crateri nov. gen. nov. sp. (Stauranderasteridae), Galbaster recurrans nov. gen. nov. sp. (Goniasteridae) and Pentasteria? liasica nov. sp. (Astropectinidae). The known diversity of Early Jurassic asteroids is increased from 12 to 16 species. These taxa illustrate the diversification of crown-group asteroids early in the Jurassic, following the Permo-Triassic crisis. They also reflect bias of the fossil record, and imply the existence of numerous ghost lineages in the evolutionary trees of extant groups. Variation in asteroid diversity across the “Seuil du Poitou” was driven by ecological constraints. The relative frequency (abundance of ossicles and diversity) of goniasterids and stauranderasterids increases in shallower environments. The Benthopectinidae, represented by Plesiastropecten hallovensis, occurred primarily from deep-shelf sediments. Similar ecological patterns are observed for more recent fossil and extant relatives, which further supports the idea of conservative evolution in post-Palaeozoic starfishes since the Early Jurassic.     

Early adaptive radiations of Aplodontoidea (Rodentia, Mammalia) on the Holarctic region: systematics, and phylogenetic and paleobiogeographic implications

The Aplodontoidea, now restricted to only one North American species (Aplodontia rufa), have shown a wide Holarctic extension since the Upper Eocene. As their fossil record is poor, their phylogenetic relationships and the origins of their successive radiations remain unclear. We perform here phylogenetic analyses, primarily based on dental evidence (94 dental of 97 characters), restricted to Paleogene and early Miocene taxa (46 taxa) in order to avoid biases introduced by substantially derived (divergent) taxa. We confirm the inclusion of some problematic genera such as Cedromus or Douglassciurus within Sciuroidea rather than in Aplodontoidea. Ephemeromys and Lophallomys appear as the most basal members of the Aplodontoidea, and Epeiromys is the closest outgroup of the Sciuroidea-Aplodontoidea clade. The relationships among the “prosciurines” remain unclear, with paraphyletic genera such as Prosciurus and Haplomys. Their diagnoses are reevaluated and a new genus is described. The Aplodontidae, including the clade of the latter, and Haplomys liolophus display a dichotomy between Ansomyinae and Aplodontinae, the two crown groups. The first clade formed by the European species argoviensis and descendens (referred to a new genus) can be proposed as a sister group of the species of Ansomys. The second branch of the dichotomy includes the European Plesispermophilus and Sciurodon as basal groups. The species of Parallomys do not form a clade, and the genus appears paraphyletic. The last dichotomy separates the Allomys clade from the ‘meniscomyine’ clade. Comparisons of the selected species allow consideration of their patterns of dental evolution (e.g. enlargement of P4, development of a metaloph—protoloph disto-mesial connection, of crescentic shape in main cusps and ectoloph, of a buccal protruding compressed mesostyle, of a metastylid crest or an anterior spur of the hypoconid, etc.). The split between sciuroids and aplodontoids occurred in North America, and then aplodontoids dispersed rapidly throughout the whole Holarctic region. The first aplodontid adaptive radiation took place either in North America or in Asia. Periodic exchanges occurred between Europe, Asia and North America, and the last radiations (meniscomyines) were restricted in North America.     

Review of paleontological data on the evolution of aquatic beetles (Coleoptera)

Paleontological data on the evolution of aquatic beetles are reviewed. A total of 37 beetle families are regarded as aquatic; five of them are extinct; three other extinct families could have had aquatic larvae; seven families are not known from the fossil record. The earliest records of fossil representatives of Recent families of aquatic beetles are given. The geological distribution of extinct families is reviewed, and the data on the modes of life of their representatives and on their evolution are provided. The new name Coleocatiniidae nom. nov. is proposed for Catiniidae Ponomarenko, 1968, a junior homonym of Catiniidae Embelton, 1901 (Crustacaea, Copepoda).