Repeated trans-Atlantic dispersal catalysed a global songbird radiation

Aim Turdus thrushes are one of the most speciose and widespread songbird genera, comprising nearly 70 species that combined have a near‐global distribution. Herein, we use molecular phylogenetic, molecular clock and behavioural evidence to examine the historical biogeography of the genus. Ancestral area reconstructions in conjunction with divergence estimates and palaeoclimatogical data are used to test whether the long‐standing paradigm of Beringian colonization or trans‐Atlantic dispersal best explains modern distributions in the New and Old Worlds. Location Worldwide, with emphasis on New World–Old World biotic interchange. Methods Using a molecular phylogenetic hypothesis of Turdus thrushes, we reconstructed ancestral area relationships utilizing the five major continental or regional areas occupied by species in the genus. We also examined the evolution of behaviours on the phylogeny, and estimated the timing of major lineage divergences via a molecular clock. Results Turdus originated in Eurasia, and following the colonization of Africa underwent a series of five trans‐Atlantic sweepstake dispersals. The data reject the alternative hypothesis that connections between Old and New World Turdus species can be attributed to movement through Beringia with subsequent extinction. Divergence estimates indicate that these dispersals all occurred near the Miocene–Pliocene boundary, 5 Ma. A significant phylogenetic correlation between migratory and flocking behaviour is evident in the genus. Main conclusions The initial divergence of Turdus in the Old World was followed by a series of trans‐Atlantic sweepstake dispersal events. These dispersals are temporally correlated with a specific palaeoclimatic system, which would have facilitated transport of Turdus from the Caribbean to the Old World across the Atlantic. Uplift of the Central American Seaway 4.7 Ma effectively shut down the palaeoclimatic system, and no additional trans‐Atlantic dispersals are evident in Turdus after this time. Migratory movements by ancestral lineages in flocks, rather than as single individuals, suggest an increased likelihood of successfully colonizing new areas, post‐dispersal.     

Molecular Cytogenetic Characterization of Multiple Intrachromosomal Rearrangements in Two Representatives of the Genus Turdus (Turdidae,Passeriformes)

Turdus rufiventris and Turdus albicollis, two songbirds belonging to the family Turdidae (Aves, Passeriformes) were studied by C-banding, 18S rDNA, as well as the use of whole chromosome probes derived from Gallus gallus (GGA) and Leucopternis albicollis (LAL). They showed very similar karyotypes, with 2n = 78 and the same pattern of distribution of heterochromatic blocks and hybridization patterns. However, the analysis of 18/28S rDNA has shown differences in the number of NOR-bearing chromosomes and ribosomal clusters. The hybridization pattern of GGA macrochromosomes was similar to the one found in songbirds studied by Fluorescent in situ hybridization, with fission of GGA 1 and GGA 4 chromosomes. In contrast, LAL chromosome paintings revealed a complex pattern of intrachromosomal rearrangements (paracentric and pericentric inversions) on chromosome 2, which corresponds to GGA1q. The first inversion changed the chromosomal morphology and the second and third inversions changed the order of chromosome segments. Karyotype analysis in Turdus revealed that this genus has derived characteristics in relation to the putative avian ancestral karyotype, highlighting the importance of using new tools for analysis of chromosomal evolution in birds, such as the probes derived from L. albicollis, which make it possible to identify intrachromosomal rearrangements not visible with the use of GGA chromosome painting solely.     

Molecular phylogenetics and the historical biogeography of dippers (Cinclus)

I used combined sequences of mitochondrial cytochrome  b and ND2 genes to determine the molecular phylogenetic relationships of all five extant species of dipper ( Cinclus ), as well as the relationships of Cinclidae to postulated nearest relatives. All methods of analysis resulted in a single best tree of dipper relationships, uniting the two South American taxa (as sisters) with the single North American exemplar, and the two Eurasian taxa forming a sister clade to the New World taxa. Further, each tree identified thrushes (Turdidae) as the closest relative to Cinclidae. Based on relationships within Cinclus , a Eurasian ancestral area is proposed, with subsequent movement into the New World. Dating of species divergences suggest that dippers arose approximately 4 mya, and achieved their present continental distributions soon after.     

Contrasting latitudinal patterns of life‐history divergence in two genera of new world thrushes (Turdinae)

Several long‐standing hypotheses have been proposed to explain latitudinal patterns of life‐history strategies. Here, we test predictions of four such hypotheses (seasonality, food limitation, nest predation and adult survival probability) by examining life‐history traits and age‐specific mortality rates of several species of thrushes (Turdinae) based on field studies at temperate and tropical sites and data gathered from the literature. Thrushes in the genus Catharus showed the typical pattern of slower life‐history strategies in the tropics while co‐occuring Turdus thrushes differed much less across latitudes. Seasonality is a broadly accepted hypothesis for latitudinal patterns, but the lack of concordance in latitudinal patterns between co‐existing genera that experience the same seasonal patterns suggests seasonality cannot fully explain latitudinal trait variation in thrushes. Nest‐predation also could not explain patterns based on our field data and literature data for these two genera. Total feeding rates were similar, and per‐nestling feeding rates were higher at tropical latitudes in both genera, suggesting food limitation does not explain trait differences in thrushes. Latitudinal patterns of life histories in these two genera were closely associated with adult survival probability. Thus, our data suggest that environmental influences on adult survival probability may play a particularly strong role in shaping latitudinal patterns of life‐history traits.     

Frugivorous birds dispersing braconid parasitoids via endozoochory

Adult braconid wasps (Bracon sp.) emerged from the droppings of frugivorous birds (Turdus blackbirds and thrushes) collected in a rural environment in southern Europe. It was thus demonstrated for the first time that an insect parasitoid of a fruit‐infesting insect (lepidopteran tortricid) can survive bird ingestion and gut passage inside a seed (privet Ligustrum vulgare), constituting a case of an evolutionary tetrad.     

Intracellular DNA transfer events restricted to the genus Convallaria within the Asparagaceae family: Possible mechanisms and potential as genetic markers for biographical studies

Intracellular gene transfer among plant genomes is a common phenomenon. Due to their high conservation and high plastid membrane integrity, chloroplast (cp) genomes incorporate foreign genetic material very rarely. Convallaria is a small monocotyledonous genus consisting of C. keiskei, C. majalis and C. montana. Here, we characterized, analyzed and identified 3.3 and 3.7 kb of mitochondrial DNA sequences in the plastome (MCP) of C. majalis and C. montana, respectively. We identified 6 bp and 23 bp direct repeats and mitochondrial pseudogenes, with rps3, rps19 and rpl10 identified in the MCP region. Additionally, we developed novel plastid molecular genetic markers to differentiate Convallaria spp. based on 21 populations. BEAST and biogeographical analyses suggested that Convallaria separated into Eurasian and North American lineages during the middle Pliocene and originated in East Asia. Vicariance in the genus was followed by dispersal into Europe and southeastern North America. These analyses indicate that the MCP event was restricted to the genus Convallaria of Asparagaceae, in contrast to similar events that occurred in its common ancestors with other families of land plants. However, further mitochondrial and population studies are necessary to understand the integration of the MCP region and gene flow in the genus Convallaria.     

Repeated vicariance of Eurasian songbird lineages since the Late Miocene

Aim The evolution of avian speciation patterns across much of Eurasia is under‐explored. Excepting phylogeographic patterns of single species, or speciation involving the Himalayas, there has been no attempt to understand the evolution of avian distributional patterns across the rest of the continent. Within many genera there is a pattern of (presumed) sister species occurring in adjacent areas (western, eastern or southern Eurasia), yet this pattern cannot be explained by existing biogeographic barriers. My aim was to examine the possible role of climate‐driven vicariance events in generating avian distributions. Location Eurasia. Methods I constructed a molecular phylogeny of Phoenicurus redstarts, and assembled phylogenetic data from published studies of seven other Eurasian bird genera. On each phylogeny, I assessed the distributional patterns of species and clades relative to refugial areas in western, eastern and southern Eurasia. I also estimated the timing of lineage divergences via a molecular clock, to determine whether distributional patterns can be explained by well‐defined periods of climate change in Eurasia that are recorded from dated sediments in the Chinese Loess Plateau. Results Species relationships in a well‐supported phylogeny of Phoenicurus show a pattern of distributions consistent with repeated speciation in major refugial areas, where one lineage is isolated in a single area of Eurasia relative to its sister lineage. This same pattern is evident in Eurasian Turdus thrushes, and six additional avian genera distributed across Eurasia. Molecular clock dating indicates that divergences within each genus are the result of multiple rounds of speciation in refugia through time, during major climate‐driven episodes of vicariance. Main conclusions Analyses revealed substantial evidence supporting a repeated, non‐random pattern of speciation within and across eight songbird lineages since the Late Miocene. The pattern of speciation supports a model of isolation in refugia during major episodes of vicariance, specifically periods of either intensified desertification of Central Asia or Eurasian glacial cycles. The densely sampled clades used here preclude inter‐continental dispersal as an alternative explanation for distributions. The signature of climate‐driven vicariance across epochs is, given the absence of extant biogeographic barriers, a suitable hypothesis to explain major lineage divergences in widely distributed Eurasian songbird lineages.     

A Collection of Ticks (Ixodidae) from Wild Birds in Uruguay

Thirty nine wild birds from seven families (Alcedinidae, Emberizidae, Furnariidae, Parulidae, Trochilidae, Turdidae and Tyrannidae) were caught from 4 to 7 of February, 2004 at Rincón da Vassoura (31°15′ S 56°03′ W) Department of Tacuarembó, Uruguay. Ninety one nymphs and forty one larvae of Ixodidae were recovered from them. The majority of ticks were conventionally identified but 16S mitochondrial rDNA sequences were obtained for larvae and nymphs of Amblyomma with uncertain specific status to be compared with sequences of species from this genus. The 16S rDNA of Haemaphysalis juxtakochi Cooley was also obtained. Most ticks, 1 nymph of Amblyomma longirostre (Koch), 5 larvae of Amblyomma aureolatum (Pallas) and 3 nymphs of Amblyomma spp., 10 nymphs and 71 larvae of H. juxtakochi, 23 nymphs and 12 larvae of Ixodes pararicinus Keirans and Clifford, were found on the 5 Turdus albicollis Vieillot and 6 Turdus rufiventris Vieillot (Turdidae) caught. One nymph of A. longirostre and 2 nymphs of I. pararicinus were collected from the only Syndactyla rufosuperciliata (Lafresnaye) (Furnariidae) captured; 1 larva of I. pararicinus was collected on one of two Basileuterus leucoblepharus (Vieillot) (Parulidae) trapped and 1 nymph of A. longirostre was found on one of nine Elaenia parvirostris Pelzeln (Tyrannidae) captured. All these findings constitute new host records with the exception of I. pararicinus on S. rufosuperciliata, and stress the importance of Turdus as hosts for I. pararicinus, H. juxtakochi and A. aureolatum. Nymphs of H. juxtakochi and Amblyomma spp. were also found on man and vegetation.     

Spanish juniper gain expansion opportunities by counting on a functionally diverse dispersal assemblage community

Seed dispersal is typically performed by a diverse array of species assemblages with different behavioral and morphological traits which determine dispersal quality (DQ, defined as the probability of recruitment of a dispersed seed). Fate of ecosystems to ongoing environmental changes is critically dependent on dispersal and mainly on DQ in novel scenarios. We assess here the DQ, thus the multiplicative effect of germination and survival probability to the first 3 years of life, for seeds dispersed by several bird species (Turdus spp.) and carnivores (Vulpes vulpes, Martes foina) in mature woodland remnants of Spanish juniper (Juniperus thurifera) and old fields which are being colonized by this species. Results showed that DQ was similar in mature woodlands and old fields. Germination rate for seeds dispersed by carnivores (11.5%) and thrushes (9.12%) was similar, however, interacted with microhabitat suitability. Seeds dispersed by carnivores reach the maximum germination rate on shrubs (16%), whereas seeds dispersed by thrushes did on female juniper canopies (15.5) indicating that each group of dispersers performed a directed dispersal. This directional effect was diluted when survival probability was considered: thrushes selected smaller seeds which had higher mortality in the seedling stage (70%) in relation to seedlings dispersed by carnivores (40%). Overall, thrushes resulted low‐quality dispersers which provided a probability or recruitment of 2.5%, while a seed dispersed by carnivores had a probability of recruitment of 6.5%. Our findings show that generalist dispersers (i.e., carnivores) can provide a higher probability of recruitment than specialized dispersers (i.e., Turdus spp.). However, generalist species are usually opportunistic dispersers as their role as seed dispersers is dependent on the availability of trophic resources and species feeding preferences. As a result, J. thurifera dispersal community is composed by two functional groups of dispersers: specialized low‐quality but trustworthy dispersers and generalist high‐quality but opportunistic dispersers. The maintenance of both, generalist and specialist dispersers, in the dispersal assemblage community assures the dispersal services and increases the opportunities for regeneration and colonization of degraded areas under a land‐use change scenario.     

Some aspects of the synanthropization of nine species of the Turdidae family in Kaliningrad

Numbers, dynamics of distribution for ten years, and relations between density and the rate of urbanization in nine species of Turdidae are calculated. During the last ten years the area of spatial distribution of most species increased by 2–15 times. A positive relationship between the numbers of birds and the rate of urbanization is revealed in the Redstart (R_{N 142} = 0.16; p = 0.049) and the Black Redstart (R_{N 134} = 0.25; p = 0.03), a negative relationship was observed in the Nightingale (R_{N 134} = ?0.23; p = 0.006) and the Robin (R_{N 43} = ?0.28; p = 0.06). The numbers of Whinchat, Wheatear, and thrushes does not depend on the rate of urbanization.     

A review of the cues used for rejecting foreign eggs from the nest by the Eurasian blackbird (Turdus merula)

Avian brood parasitism is reproductively costly for hosts and selects for cognitive features enabling anti‐parasitic resistance at multiple stages of the host''s breeding cycle. The true thrushes (genus Turdus) represent a nearly worldwide clade of potential hosts of brood parasitism by Cuculus cuckoos in Eurasia and Africa and Molothrus cowbirds in the Americas. The Eurasian blackbird (Turdus merula) builds an open‐cup nest and is common within much of the common cuckoo''s (C. canorus) breeding range. While this thrush is known to be parasitized at most only at low rates by this cuckoo, the species is also a strong rejector of nonmimetic foreign eggs in the nest. Given their open‐cup nesting habits, we predict that Eurasian blackbirds primarily use visual cues in making a distinction between own and parasitically or experimentally inserted foreign eggs in the nest. We then provide a comprehensive and quantitative review of the literature on blackbird egg rejection studies. This review corroborates that vision is the primary sensory modality used by blackbirds in assessing eggs, but also brings attention to some other, less commonly studied cues which appear to influence rejection, including predator exposure, individual experience, stage of clutch completion, and maternal hormonal state. Blackbirds are also able to recognize and eject even highly mimetic eggs (including those of conspecifics) at a moderate rate, apparently relying on many of the same sensory cues. Although the cues involved in foreign egg recognition by Eurasian blackbirds do not appear specialized to nonmimetic cuckoo parasitism, we cannot differentiate between the possibility of egg rejection being selected by mostly conspecific parasitism or by the evolutionary ghost of a now‐extinct, mimetic cuckoo host‐race.     

Multiple Chromosomal Rearrangements Structured the Ancestral Vertebrate Hox-Bearing Protochromosomes

While the proposal that large-scale genome expansions occurred early in vertebrate evolution is widely accepted, the exact mechanisms of the expansion—such as a single or multiple rounds of whole genome duplication, bloc chromosome duplications, large-scale individual gene duplications, or some combination of these—is unclear. Gene families with a single invertebrate member but four vertebrate members, such as the Hox clusters, provided early support for Ohno's hypothesis that two rounds of genome duplication (the 2R-model) occurred in the stem lineage of extant vertebrates. However, despite extensive study, the duplication history of the Hox clusters has remained unclear, calling into question its usefulness in resolving the role of large-scale gene or genome duplications in early vertebrates. Here, we present a phylogenetic analysis of the vertebrate Hox clusters and several linked genes (the Hox “paralogon”) and show that different phylogenies are obtained for Dlx and Col genes than for Hox and ErbB genes. We show that these results are robust to errors in phylogenetic inference and suggest that these competing phylogenies can be resolved if two chromosomal crossover events occurred in the ancestral vertebrate. These results resolve conflicting data on the order of Hox gene duplications and the role of genome duplication in vertebrate evolution and suggest that a period of genome reorganization occurred after genome duplications in early vertebrates.     

Opposing Nodal/Vg1 and BMP signals mediate axial patterning in embryos of the basal chordate amphioxus

The basal chordate amphioxus resembles vertebrates in having a dorsal, hollow nerve cord, a notochord and somites. However, it lacks extensive gene duplications, and its embryos are small and gastrulate by simple invagination. Here we demonstrate that Nodal/Vg1 signaling acts from early cleavage through the gastrula stage to specify and maintain dorsal/anterior development while, starting at the early gastrula stage, BMP signaling promotes ventral/posterior identity. Knockdown and gain-of-function experiments show that these pathways act in opposition to one another. Signaling by these pathways is modulated by dorsally and/or anteriorly expressed genes including Chordin, Cerberus, and Blimp1. Overexpression and/or reporter assays in Xenopus demonstrate that the functions of these proteins are conserved between amphioxus and vertebrates. Thus, a fundamental genetic mechanism for axial patterning involving opposing Nodal and BMP signaling is present in amphioxus and probably also in the common ancestor of amphioxus and vertebrates or even earlier in deuterostome evolution.     

Molecular characterization and distribution of Haemoproteus minutus (Haemosporida,Haemoproteidae): A pathogenic avian parasite

Recently, the lineage hTURDUS2 of Haemoproteus minutus (Haemosporida, Haemoproteidae) was reported to cause mortality in captive parrots. This parasite lineage is widespread and prevalent in the blackbird Turdus merula throughout its entire distribution range. Species identity of other closely related lineages recently reported in dead parrots remains unclear, but will be important to determine for a better understanding of the epidemiology of haemoproteosis. Using polymerase chain reaction (PCR)-based and microscopic methods, we analyzed 265 blood samples collected from 52 species of wild birds in Eurasia (23 samples from Kamchatka Peninsula, 73 from Sakhalin Island, 150 from Ekaterinburg and 19 from Irkutsk regions of Russia). Single infections of the lineages hTURDUS2 (hosts are redwing Turdus iliacus and fieldfare Turdus pilaris), hTUPHI1 (song thrush Turdus philomelos) and hTUCHR01 (fieldfare, redwing, song thrush and brown-headed thrush Turdus chysolaus) were detected. We identified species of these haemoproteids based on morphology of their blood stages and conclude that these lineages belong to H. minutus, a widespread parasite of different species of thrushes (genus Turdus), which serve as reservoir hosts of this haemoproteid infection. Phylogenetic analysis shows that the lineages hTURDUS2, hTUCHR01 and hTUPHI1 of H. minutus are closely related to Haemoproteus pallidus (lineages hPFC1 and hCOLL2), Haemoproteus pallidulus (hSYAT03), and Haemoproteus sp. (hMEUND3); genetic distance among their mitochondrial cytochrome b (cyt b) lineages is small (< 1% or < 4 nucleotides). All these blood parasites are different in many morphological characters, but are similar due to one feature, which is the pale staining of their macrogametocytes' cytoplasm with Giemsa. Because of the recent publications about mortality caused by the lineages hTUPHI1 and hTURDUS2 of H. minutus in captive parrots in Europe, H. minutus and the closely related H. pallidus and H. pallidulus are worth more attention as these are possible agents of haemoproteosis in exotic birds. The present study provides barcodes for molecular detection of different lineages of H. minutus, and extends information about the distribution of this blood parasite.     

Phylogenetic relationships and natural hybridization in Triadica inferred from nuclear and chloroplast DNA analyses

Triadica (Euphorbiaceae) is a small genus endemic to East Asia and Southeast Asia, consisting of three species differentially adapted to heterogeneous habitats. To date, the phylogenetic relationships of this genus have not been resolved, and there has been no evidence for interspecific hybridization in Triadica. In this study, we sequenced the nrITS regions, two nuclear genes and a chloroplast gene to reconstruct the molecular phylogeny of Triadica and to test the hypothesis of natural hybridization between Triadica sebifera and Triadica cochinchinensis, and between T. sebifera and Tridica rotundifolia. Phylogenetic analysis showed that T. sebifera diverged first within this genus, and T. cochinchinensis and T. rotundifolia were sister species. Both of the two putative hybrids show chromatogram additivity at each of the two nuclear genes, providing convincing evidence for natural hybridization between T. sebifera and T. cochinchinensis, and between T. sebifera and T. rotundifolia. The chloroplast gene sequences of both hybrids were identical with that of T. sebifera, suggesting that T. sebifera was the maternal parent of the two hybrids. This is the first report of natural hybridization in Triadica, and the hybrids identified in this study should be a good starting point for further hybridization-based breeding in T. sebifera.     

Large-scale features affect spatial variation in seed dispersal by birds in juniper woodlands

Fruit–frugivore interactions have received great attention from evolutionary, ecological and applied perspectives. However, despite the fact that large-scale approaches may offer new insights on fruit–frugivore interactions, little work has been devoted to exploring the factors shaping large-scale variation of seed dispersal. This paper studies the spatial variation in seeds regurgitated within pellets by wintering thrushes (genusTurdus) in a set of 26 Spanish juniper (Juniperus thurifera) woodlands scattered along a latitudinal gradient during two winters of contrasting cone and bird abundance. It explicitly explores whether pellet rain variation among woodlands was related to changes in vegetation cover, temperature, day length duration and bird abundance. Top regression models in the Akaike information criterion framework explained 34 % and 70 % of variance in pellet numbers in low and high crop and bird abundance years, respectively. In both winters, the spatial variation in pellets correlated to thrush abundance and day length duration. Pellet abundance linked to cone distribution only in the year of high crop, in which many migratory, extra-Iberian thrushes arrived to exploit the resource. Strong dependence of seed dispersion on large-scale features affecting bird numbers (e.g. the arrival of extra-Iberian migratory birds) and feeding behaviour (e.g. latitudinal variation in day length duration) suggests a primary role for variables acting at large scale on this mutualistic interaction.     

Long-term stability of the seasonal succession of different zooplankton species in a brackish water lagoon (southern Baltic Sea)

While it has been widely suggested that freshwater fishes from East Asia invaded the western Palaearctic, details about this process are largely unknown. Here, using the cytochrome b gene, we evaluated the phylogenetic relationships of a small group of Eurasian primary freshwater fishes (Cobitidae), which are widely distributed and species rich in East Asia and Europe, with the purpose of inferring their invasion process of Europe from East Asia. Though phylogenetic relationships of cobitids were not well resolved, our analysis could identify three sister groups formed by the European and East Asian cobitids, which brought new insights into the biogeography of the genera Cobitis, Misgurnus, and Sabanejewia. The present results support the view that Asian cobitid fishes may have invaded Europe at least five times independently, and once reverse colonization of European cobitids to East Asia could also be found. Ancestral Sabanejewia might have been the first cobitids to cross Siberia and invade the EMZS (Euro-Mediterranean zoogeographic subregion) about 33.54 million years ago (MYA). One lineage of Cobitis and the ancestor of Misgurnus fossilis (Linnaeus) almost in the same time invaded the Europe, responding to 16.71 MYA and 16.59 MYA, respectively. Three different lineages of Cobitis were found to have invaded the EMZS from East Asia, and once reverse invasion to East Asia occurred to one subclade of European Cobitis. And our data also suggest that the diversity of East Asian cobitid fishes, especially of the genus Cobitis, is greatly underestimated. Handling editor: C. Sturmbauer