Stabilization of the Escherichia coli elongation factor Tu-GTP-aminoacyl-tRNA complex

The effect of ammonium sulfate on the Escherichia coli elongation factor Tu-GTP-aminoacyl-tRNA complex has been studied. The half-lives of 12 E. coli aminoacyl-tRNA species were determined at 37 degrees C in the presence and absence of an equimolar amount of EF-Tu-GTP and in the presence and absence of 1.5 M ammonium sulfate. The results indicate that the addition of 1.5 M ammonium sulfate to the ternary complex increased the stability of all 12 complexes studied. In addition, the effects of various salts and crystallization agents on the stability of the E. coli EF-Tu-GTP-phenylalanyl-tRNA complex was studied in detail. Binding parameters were also measured under various conditions at 37 degrees C. The results indicate that the stability and the Kassoc of the ternary complex, using phenylalanyl-tRNA, can be increased by the presence of polyethylene glycol or ammonium sulfate.     

Phosphofructokinase from lycopersicon esculentum fruits-II. Changes in the regulatory properties with dissociation

The regulatory properties of PFK. from the tomato are discussed in relation to the dissociation of the oligomeric form of the enzyme. Both the oligomeric and monomeric forms of PFK were inhibited by citrate, malate, PEP, 2-phosphoglycerate, phosphoglycolate and ammonium sulphate. PEP was the most potent inhibitor of PFK activity with 9 and 10 μn PEP causing 50%, inhibition of the oligomeric and monomeric forms of PFK respectively. The inhibition by all these metabolites of the oligomeric form of PFK was sigmoidal while their inhibition of the monomeric form was hyperbolic. The magnitude of inhibition by these metabolites is affected by the levels of Mg²⁺. The oligomeric form of the enzyme is more resistant to citrate inhibition than the monomeric form. In the presence of citrate or ammonium sulphate, the kinetics of the oligomeric form of PFK with F6P yielded positive cooperativity while in their absence, the kinetics revealed negative cooperative interactions. Phosphoenolpyruvate had no effect on the nature of the kinetics with F6P. ADP is stimulatory to the oligomeric form while it is slightly inhibitory to the monomeric form. The significance of these properties and their relation with the regulation of PFK activity in vivo are discussed.     

The effect of ions on the enzymatic properties of beef-liver glutamate dehydrogenase.

The effect of various salts on the enzymatic activity of beef-liver glutamate dehydrogenase, on the binary enzyme-reduced coenzyme (NADH or NADPH) comples, as well as on the ternary complex with glutamate was investigated in aqueous solution (0.067M phosphate buffer, pH 7.6). Binding studies in the analytical ultracentrifuge and circular dichroism measurements indicated dissociation of the coenzyme from the enzyme-coenzyme complex by the action of various salts. The efficiency of this change was largely dependent on the type of anion present and generally followed the series: acetate < Br^? < I^? < SCN^?. Acetate ions and guanidinium thiocyanate showed exceptional behaviour in some cases, while K⁺ and Na⁺ gave similar results. The reversibility of the ion effects on the enzymatic activity was demonstrated by dilution tests. Upon addition of salts, the inhibitory effect of GTP was slightly changed in most cases, while the activating effects of ADP and L -leucine were practically abolished and with ADP, the halides caused an additional inhibition. Assuming an equilibrium involving dissociation of the enzyme-coenzyme complex by the action of salts, an exponent of 1.3 for NaBr and of 2.0 for KSCN was calculated for the respective concentrations. The apparent equilibrium constants were evaluated to be about 20 times greater for KSCN than for NaBr.     

ACTIVATION, INHIBITION AND AGGREGATION OF CHOLINE ACETYLTRANSFERASE (EC 2.3.1.6)

—Mercuric chloride, silver acetate and cupric sulphate (0·1 mm ) completely inhibited purified choline acetyltransferase from bovine caudate nuclei. At the same concentration cadmium chloride and zinc acetate gave a 50 per cent inhibition. Potassium and sodium salts more than doubled the enzymatic activity while creatinine hydrochloride more than tripled it. Guanidine hydrochloride was less effective than creatinine hydrochloride but more effective than KCl and NaCl. Sodium chloride and creatinine hydrochloride had a synergistic effect on the enzyme. When ammonium sulphate was used to fractionate the choline acetyltransferase that had been extracted from bovine caudate nuclei, the enzyme aggregated into different molecular sizes as determined by exclusion chromatography on Bio-gel A-1·5 m. The molecular weight of the largest aggregate was at least 10⁶ daltons. The initial tissue extract contained only one molecular species of ChAc as did a partially purified preparation in which ammonium sulphate was not used in the purification.     

Induction of synchronous secondary somatic embryogenesis in Camellia sinensis (L.) O. Kuntze

Nutritional effect of nitrate salts of potassium and ammonium, together with different concentrations of sulphate salts of aluminium, potassium, magnesium, and ammonium on secondary somatic embryogenesis, wereinvestigated. Nitrate salts of potassium (9.39 mmol/L) and ammonium (10.31 mmol/L) with only 1.5 mmol/L potassium sulphate produced maximum number of synchronous secondary embryos (i.e. 20-25 secondary embryos per primary embryo in 91.6 percnt; responsive explants).Of the different factorial combinations of glutamine, BAP, and IBA tested, maximum number of synchronous secondary embryos developed on a medium supplemented with 8.88 μmol/L BAP, 0.98 μmol/L IBA and 10 mmol/L glutamine.Synchronous and normal development of secondary embryos could thus be obtained when optimal concentrations of PGRs, glutamine, nitrates, and salts of potassium sulphate were combined together.Germination of the embryos (up to 52 percnt;) was acheived only when sulphate salts of potassium were removed from the medium.     

Nitrogen balance sheet of (NH4)2SO4-gypsum pellets and mixtures and ureaformaldehyde applied to corn in pots of sand

Summary A comparison of ammonium sulphate added to sand pots in different ways and ureaformaldehyde as sources of N to corn plants was carried out. The results showed that nitrogen utilization by plants from ammonium sulphategypsum pellets was greater than its utilization when ammonium sulphate was mixed with gypsum or when the pellets were ground or from ureaformaldehyde. The leached nitrogen from the pellets, ammonium sulphate applied in 3 portions and ureaformaldehyde was not significantly different and was lower than other ammonium sulphate treatments. The nitrogen remaining in pots fertilized by ureaformaldehyde was much greater than the corresponding amount in the case of all ammonium sulphate treatments. Gaseous loss of nitrogen took place in all nitrogen treatments with the loss from ammonium sulphate-gypsum pellets being the lowest.Incubation in sand of ureaformaldehyde, urea, and ammonium sulphate was carried out to understand better the growth conditions of corn fertilized by ureaformaldehyde. In the case of ureaformaldehyde- and urea-sand systems, the pH increased, NO₂ ^– accumulated and considerable loss of nitrogen took place. The pH, the NO₂ ^– accumulation and the loss of N tended to decrease with gypsum increments. re]19720801     

A15N tracer study to compare nitrogen supply by Azolla and ammonium sulphate to IR8 rice plants grown under flooded conditions

Summary A pot experiment was carried out using a Bangladesh sandy loam paddy soil of pH 6.9 to compare the rates at which nitrogen from Azolla and ammonium sulphate was available to a high yielding rice variety, IR8, grown for 60 days in pots with 4 cm standing flood water.¹⁵N tracer studies confirm that nitrogen from ammonium sulphate was more available to the rice plants than from Azolla. An application of 6, 9 and 18 mg N of Azolla pot^–1 (each pot contained 250 g soil) increased shoot dry matter yields by 13, 29 and 49% for an uptake of 19, 36 and 85% more nitrogen; the corresponding increases on using ammonium sulphate were 33, 54 and 114% for an increased uptake of 57, 90 and 177% more nitrogen, respectively. About 34% of applied¹⁵N of Azolla was taken up by the rice plants in 60 days but 61% of¹⁵N of the ammonium sulphate was absorbed during this period. About 45% of the Azolla-N was released in 60 days, 55% remained in the soils as undecomposed material and 11% was lost as gas. The gaseous loss of¹⁵N from ammonium sulphate was 14%; 25% remained in the soils.     

Genes coding for valine transfer ribonucleic acid-3b in Drosophila melanogaster.

The genes for tRNA_3b^val were localized to 84D and 92B on the polytene chromosomes of Drosophila melanogaster with a possible minor site at 90B-C by hybridization in situ and autoradiography with ¹²⁵I-labeled tRNA_3b^val. Flies carrying a duplication of the 84D region had increased amounts (30%) of tRNA_3b^val in proportion to the increased number of genes. While a proportional decrease in the amount of tRNA^val_3b in flies bearing a deletion of the same region was found, the total acceptance of valine remained at the level found in the wild type.     

Fermentation Studies with Streptomyces griseus: II. Synthetic Media for the Production of Streptomycin

Synthetic media for streptomycin fermentation were studied to determine which media gave highest yields of streptomycin. The effect of salts on streptomycin production by Streptomyces griseus was examined, and a suitable combination of salts was established in a glucose-casein medium. This medium yielded 3,000 μg/ml of the antibiotic with an inoculum of 1.6%. Substitution of amino acids for casein was examined. Of 17 amino acids tested, best results were obtaind with sodium aspartate. Substitution of ammonium salts was tried, and an excellent streptomycin yield was obtained with a medium containing ammonium citrate.     

Interference of Copper Sulphate in Growth of Erwinia amylovora

To understand the toxicity of copper salts on Erwinia amylovora, which are used in the control of fire blight, bacterial growth and cell metabolism was assayed with copper sulphate in the presence or absence of complex-forming compounds such as various amino acids or citrate. In minimal medium without amino acids copper sulphate strongly interfered with the growth of E. amylovora. A concentration of 15 μm CuSO₄ resulted in about 50% growth inhibition. In contrast to a strong effect of streptomycin, copper ions barely killed the cells when incubated in minimal medium for 1 h. The addition of 4 g asparagine per litre relieved a‘bacteriostatic’effect of copper ions and allowed growth of the bacteria at 2 mm CuSO₄. Other amino acids had a similar effect in the protection of E. amylovora against copper ions. This was in contrast to glycine betain, which was unable to suppress growth inhibition by CuSO₄. Presumably, the free ammonium groups of amino acids participated in the protective effect. The addition of citrate, exceeding the amount of copper-ions, was also protective. Bioluminescence of E. amylovora cells was expressed via a constitutive promoter from the lux-operon of Vibrio fischeri. The light emission is dependent on active cell metabolism. In a novel approach to determine the immediate response of E. amylovora after the addition of copper sulphate, the change of bioluminescence was determined. Addition of copper ions to MM3 medium strongly affected the bioluminescence, but no change in light production was noticed, when citrate or asparagine were present in addition to copper sulphate. A decrease of bioluminescence to 50% was observed for 50 μm CuSO₄ in the absence of amino acids.     

Anion transporters in plant mitochondria

The swelling of potato (Solanum tuberosum L.) mitochondria in isosmotic ammonium salts of phosphate, chloride, malate, succinate, and citrate was investigated by measuring light scattering. Potato mitochondria swell spontaneously in ammonium phosphate, and this swelling can be inhibited in N-ethylmaleimide. They swell in ammonium malate or succinate only after the addition of inorganic phosphate and in ammonium citrate only after the addition of both phosphate and a dicarboxylic acid. Pentylmalonate inhibits swelling in ammonium citrate solutions by competing for dicarboxylate entry. The results indicate that potato mitochondria possess a phosphate-hydroxyl carrier, a dicarboxylate carrier, and a tricarboxylate carrier.     

The culture of plant cells with ammonium salts as the sole nitrogen source

Soybean cell suspension cultures grew on defined media with ammonium as the sole nitrogen source if Krebs cycle acids were added. Satisfactory growth was obtained with ammonium salts of citrate, malate, fumarate, or succinate, when compared with the regular medium containing nitrate and ammonium. Little or no growth occurred when ammonium salts of shikimate, tartrate, acetate, carbonate, or sulfate were used. The cells also grew well with l-glutamine as nitrogen source. The specific activities of glutamine synthetase and isocitrate dehydrogenase (nicotinamide adenine dinucleotide phosphate) were lower than in cells grown on a nitrate medium, but ammonium enhanced the activity of glutamate dehydrogenase. Cells of soybean, wheat, and flax have been cultured for an extended period on the ammonium citrate medium.     

The effects of high concentrations of salts on photosynthetic electron transport of immobilized thylakoids: Functional stability

Summary Stability studies of photosynthetic activity under continuous saturating illumination are presented. Chloroplast membranes (thylakoids) are isolated in a classical Hepes/sorbitol buffer or in high salt concentration buffers (citrate or sulphate) and then immobilized in a co-crosslinking serum albumin-glutaraldehyde matrix. The activities of these immobilized systems tested in a batch reactor are greatly increased by high concentrations of salts (223 and 277 mol ferrocyanide/mg of chlorophyll per hour for citrate; 243 and 267 mol ferrocyanide/mg of chlorophyll per hour for sulphate, compared with 141 mol ferrocyanide/mg of chlorophyll per hour for sorbitol). In continuous stirred-tank reactors, the conversion rates increase when high concentrations of salts are present in the buffer (approximately 36% for citrate and 34% for sulphate compared with 18% for sorbitol). The functional stability of these immobilized systems during continuous illuminations is higher in citrate (7.5 h) than in sulphate (5.5 h) or sorbitol (3.5 h). These experiments performed in batch or in continuous stirred-tank reactors underline the importance of salt ions in the reaction media.Abbreviations ADP Adénosine diphosphate - ATP Adénosine triphosphate - EDTA Ethylenediaminetetraacetate - Hepes 4-(2-hydroxyethyl)-1 piperazine-ethane sulphonic acid - Sorbitol thylakoids thylakoids isolated in sorbitol buffer - Citrate thylakoids thylakoids isolated in potassium citrate buffer - Sulphate thylakoids thylakoids isolated in sodium sulphate buffer - Immobilized sorbitol thylakoids thylakoids isolated in sorbital buffer and then immobilized in an albumin matrix - Immobilized citrate thylakoids thylakoids isolated in potassium citrate buffer and then immobilized in an albumin matrix - Immobilized sulphate thylakoids thylakoids isolated in sodium sulphate buffer and then immobilized in an albumin matrix - Control thylakoids thylakoids isolated in sorbitol buffer and tested in sorbitol buffer - High salt thylakoids thylakoids isolated in high salt concentration buffer and tested in this buffer     

Extraction of peroxidase from bitter gourd (Momordica charantia) by three phase partitioning with dimethyl carbonate (DMC) as organic phase

Three phase partitioning (TPP) is most renowned technique used for extraction and purification of natural products. In previous studies of TPP, t-butanol is mainly used as an organic phase. This is the first report that explores ability of dimethyl carbonate (DMC) in the field of TPP as an alternate solvent for t-butanol. In the present study TPP process with t-butanol and DMC as organic phase along with different salts was applied to waste bitter gourd powder to obtained peroxidase enzyme. DMC was found to be compatible with most of salts such as ammonium sulphate and sodium citrate and explored as more efficient solvent than t-butanol. This TPP system provides 4.84 fold purity of peroxidase enzyme at optimum source concentration of 0.15 g/mL, with a system comprising DMC as organic phase, sodium citrate (20%) as salt, agitation speed 120 rpm, pH 7, temperature 30 °C and extraction time of 3 h. Present study has aimed for extraction and separation of peroxidase from bitter gourd waste with TPP technique and ensures the scope of carbonated solvents in extraction and purification of proteins.     

Ammonium ion & citric acid supplementation in batch cultures ofAspergillus niger B 60

Summary The effect of a single pulse of ammonium sulphate or of citrate upon the progress and final outcome of a batch citric acid fermentation was studied. It was found that the optimum addition time for the supplemental N was in the range of 40 to 75 h. Final citric acid concentration achieved was significantly increased when the concentration of N source added was between 0.25 and 0.5 kg m^–3. The mechanism of the observed stimulation seemed to be an indirect one. Addition of exogenous citric acid to the broth, led to an increase in citrate production by the culture. The optimum time for citric acid addition was around 90 h.Nomenclature Y_p/s Yield of citric acid produced (kg) on sucrose consumed (kg) - P/t Overall citric acid productivity (kg m^–3 h^–1)     

Molecular trigger for pre-transfer editing pathway in Valyl-tRNA synthetase: A molecular dynamics simulation study

Pre-transfer editing pathway in Valyl-tRNA synthetase (ValRS) is a very important process to maintain the high fidelity of protein synthesis. However, molecular basis for this pathway remains unclear. Here we employed molecular dynamics (MD) simulation to study two complexes, ValRS·tRNA^val·Val-AMP (complex V) and ValRS·tRNA^val·Thr-AMP (complex T), and compared their simulation trajectories, in order to understand how the pre-transfer editing pathway is triggered by the noncognate substrate Thr-AMP. The MD simulations showed that the binding of Thr-AMP to ValRS led to different motions from those in complex V: clockwise rotation of the editing domain along the hinge region, and strong motions in the catalytic domain, especially in KMSKS loop. We found that the changed motion of Trp495 induced by Thr-AMP serves as a signal to discriminate Thr-AMP from Val-AMP, and the rigid ⁴⁹¹ILFL⁴⁹⁴ segment then propagates this signal from Trp495 to Asp490 and induces dissociation of the salt-bridge Asp490-Arg346 and formation of the salt-bridge Glu189-Lys533. The change in salt-bridges alters the motion of KMSKS loop and the editing domain, and eventually triggers the pre-transfer editing pathway. This study provides a model for the molecular trigger of the pre-transfer editing pathway in ValRS, and is useful for further exploring this process.     

A Neutron Scattering Study of the Ternary Complex EF-Tu•GTP-valy1-tRNAVal 1A

Abstract

The complex formation between elongation factor Tu (EF-Tu), GTP, and valyl-tRNA^Val _1A has been investigated in a hepes buffer of “pH” 7.4 and 0.2 M ionic strength using the small-angle neutron scattering method at concentrations of D₂O where EF-Tu (42% D₂O) and tRNA (71% D₂O) are successively matched by the solvents. The results indicate that EF-Tu undergoes a conformational change and contracts as a result of the complex formation, since the radius of gyration decreases by 15% from 2.82 to 2.39 nm. tRNA^Val _1A, on the other hand, seems to mainly retain its conformation within the complex, since the radii of gyration for the free (after correction for interparticular scattering) and complexed form are essentially the same. 2.38 and 2.47 nm, respectively.     

Brain-Derived Neurotrophic Factor – A Major Player in Stimulation-Induced Homeostatic Metaplasticity of Human Motor Cortex?

Repetitive transcranial magnetic stimulation (rTMS) of the human motor hand area (M1_HAND) can induce lasting changes in corticospinal excitability as indexed by a change in amplitude of the motor-evoked potential. The plasticity-inducing effects of rTMS in M1_HAND show substantial inter-individual variability which has been partially attributed to the val⁶⁶met polymorphism in the brain-derived neurotrophic factor (BDNF) gene. Here we used theta burst stimulation (TBS) to examine whether the BDNF val⁶⁶met genotype can be used to predict the expression of TBS-induced homeostatic metaplasticity in human M1_HAND. TBS is a patterned rTMS protocol with intermittent TBS (iTBS) usually inducing a lasting increase and continuous TBS (cTBS) a lasting decrease in corticospinal excitability. In three separate sessions, healthy val⁶⁶met (n = 12) and val⁶⁶val (n = 17) carriers received neuronavigated cTBS followed by cTBS (n = 27), cTBS followed by iTBS (n = 29), and iTBS followed by iTBS (n = 28). Participants and examiner were blinded to the genotype at the time of examination. As expected, the first TBS intervention induced a decrease (cTBS) and increase (iTBS) in corticospinal excitability, respectively, at the same time priming the after effects caused by the second TBS intervention in a homeostatic fashion. Critically, val⁶⁶met carriers and val⁶⁶val carriers showed very similar response patterns to cTBS and iTBS regardless of the order of TBS interventions. Since none of the observed TBS effects was modulated by the BDNF val⁶⁶met polymorphism, our results do not support the notion that the BDNF val⁶⁶met genotype is a major player with regard to TBS-induced plasticity and metaplasticity in the human M1_HAND.     

Coordination chemical studies on metalloenzymes. IX. Properties of the ternary complex between cobalt(II)-bovine carbonic anhydrase and bidentate ligands

The spectrum, thermodynamic parameters, and proton longitudinal relaxation time of the ternary complex between various bidentate ligands (2-pyridinecarboxylate, 2-quinolincarboxylate, 8-quinolinecarboxylate, and 2-pyridylacetate) and cobalt(II)-bovine carbonic anhydrase were measured to clarify the nature of the ternary complex. The formation constants of the ternary complexes of bidentate ligands are in the order of (2-pyridinecarboxylate ? 8-quinolinecarboxylate ? 2-quinolinecarboxylate ≈2-pyridylacetate). The degree of the shift of the band characteristic of five-coordinate species at 13-15 kcm^-1 (cm^-1 × 10^-3) and that of the higher energy band at 21–22 kcm^-1 decrease almost in the same order. These results are explained on the basis of the contribution of the bond formation between the nitrogen atom of the heterocyclic ring of ligands and cobalt ion. The formation constants of the ternary complex of bidentate ligands were compared to the stability constants of various ligands with a cobalt ion but there is no correlation in these values. The rate constant of break-up of the ternary complex was discussed on the coordination geometry of the ternary complex on the basis of the degree of the distortion.     

Preparation of bovine blood coagulation factors X1 and X2

A method is described for the preparation of both Factor X1 and Factor X2 from citrated bovine blood. The proteins from the plasma were first adsorbed on barium citrate by adding barium chloride solution. The precipitate formed was stirred with citrate/NaOH pH 6.9 buffer; barium and other clotting factors were removed by adding ammonium sulphate (up to 30% saturation) to the suspension. The Factor X was then precipitated by 65% ammonium sulphate, after resolution in citrate buffer chromatographed on DEAE-Sephadex and purified by rechromatography on DEAE-Sephadex and DEAE-Sepharose, respectively. This yielded Factor X1 and Factor X2 with respective purifications of about 16 000 and 24 000-fold that of the plasma. The apparent molecular mass of both Factor X1 and Factor X2 was 55 kDa as estimated by the sodium dodecyl sulphate-polyacrylamide gel electrophoresis. Factor X2 had a higher specific biological activity of about 340 000 units/mg compared to that of Factor X1 of about 230 000 units/mg.