Structure and properties of a ferrocenylpyrimidine-bromanilic acid hydrogen-bonded supramolecular complex

A hydrogen-bonded assembly composed of ferrocenylpyrimidine (FcPM) and bromanilic acid (BA), represented as [FcPM](BA)(acetone)_0.5, was prepared and crystallographically characterized. The asymmetric unit of the crystal contained two crystallographically independent molecules of FcPM and BA, which were alternately connected to form one-dimensional zigzag chains via OH?N hydrogen bonds. The BA molecules were stacked to form one-dimensional columns. No charge transfer was observed between FcPM and BA. Acetone molecules, which were located in channels, were desorbed at 433 K.     

Structure and properties of a macrocyclic silver(II) supramolecular polymer

A new silver(II) complex, {[Ag(L1)](NO₃)₂·4H₂O}_n (1) (L = 3,14-dimethyl-2,6,13,17-tetraazatricyclo[14,4,0^1.18,0^7.12] docosane) has been synthesized and structurally characterized by a combination of analytical, spectroscopic, electrochemical and X-ray diffraction methods. The complex 1 exhibits a 1D supramolecular polymer with the silver(II) macrocycle L1 and nitrate ions, where 1D chain is formed by hydrogen bonds between the two sets of pre-organized N-H groups of the macrocycle and nitrate ions. The lattice water molecules mediate to interconnect each 1D chain to form the 2D supramolecular sheet. In 1 the unusual high oxidation state of Ag(II) is stabilized by the tetraazamacrocyclic ligand L1. The cyclic voltammogram for 1 indicates that the electrochemical oxidation of [Ag(L1)]²⁺ is an irreversible process.     

Zinc complexes of the antibacterial drug oxolinic acid: Structure and DNA-binding properties

The neutral mononuclear zinc complexes with the quinolone antibacterial drug oxolinic acid in the absence or presence of a nitrogen donor heterocyclic ligand 2,2′-bipyridine or 1,10-phenanthroline have been synthesized and characterized. The experimental data suggest that oxolinic acid is on deprotonated mode acting as a bidentate ligand coordinated to the metal ion through the ketone and one carboxylato oxygen atoms. The crystal structures of (chloro)(oxolinato)(2,2′-bipyridine)zinc(II), 2, and bis(oxolinato)(1,10-phenanthroline)zinc(II), 3, have been determined with X-ray crystallography. The biological activity of the complexes has been evaluated by examining their ability to bind to calf-thymus DNA (CT DNA) with UV and fluorescence spectroscopies. UV studies of the interaction of the complexes with DNA have shown that they can bind to CT DNA and the DNA-binding constants have been calculated. Competitive studies with ethidium bromide (EB) have shown that complex 3 exhibits the ability to displace the DNA-bound EB indicating that it binds to DNA in strong competition with EB.     

Structure and properties of two polymorphs of tetra-n-butylammonium bis(maleonitriledithiolato)platinate(1−)

Structural determination of tetra-n-butylammonium bis(maleonitriledithiolato)platinate(1−), a polymorphic compound, revealed that one polymorph consists of a columnar arrangement of dimers of the anion and is isomorphous with a corresponding nickelate complex. In contrast to the nickelate complex, the complex exhibited no spin-Peierls transition; strong antiferromagnetic interactions were observed between the anions due to dimerization in the column. The other polymorph consists of a tetramer unit of the anion.     

Three complexes based on ligands 1-hydroxybenzotriazole and 1,4-benzenedicarboxylic acid: Synthesis, structures and luminescence properties

Three new complexes, [Mn(OBt)₂(H₂O)₄]·3H₂O (1) (OBt = 1-hydroxybenzotriazole ion), [Zn₂(OBt)₂(BDC)(H₂O)·H₂O]_n (2) (H₂BDC = 1,4-benzenedicarboxylic acid), and [Cu₃(OBt)₂(BDC)(μ₃-OH)₂(H₂O)₂·2H₂O]_n (3) were synthesized by hydrothermal method and were characterized by elemental analysis, IR spectroscopy, TGA, XRPD, and single-crystal X-ray diffraction. The results from single-crystal X-ray diffraction indicate that 1, 2 and 3 are zero-dimensional (0D), two-dimensional (2D) and two-dimensional (2D) frameworks, respectively. In particular, there are all two crystallographically unique metal ions in the structures of complexes 2 and 3. Complex 2 possesses two helical chains in its structure. In the structure of 3, the chains that are built from tri-copper clusters and μ₃-O atoms are connected with BDC²⁻ to construct 2D grid structure. The luminescence properties of the three complexes were investigated.     

Structure and magnetic properties of polynuclear copper(II) compounds with syn-anti carboxylato- and bromo-bridges

Synthesis, spectroscopic and magnetic properties, and X-ray crystal structures of two copper(II) polymers Cu(2-qic)Br (2-qic = quinoline-2-carboxylate) (1) and Cu(2-pic)Br (2-pic = pyridine-2-carboxylate) (2) are described. These compounds are isostructural with Cu(2-qic)Cl and Cu(2-pic)Cl, respectively, the X-ray crystal structures of which were reported recently. Both complexes are polynuclear copper(II) compounds (1D and 2D, respectively) based on syn-anti carboxylate bridges and additionally on linear monobromo- (in 1) and dibromo-bridging (in 2) motifs. The magnetic properties were investigated in the temperature range 1.8-300 K. They reveal the occurrence of strong antiferromagnetic coupling (J₁ = −102.5 cm⁻¹) through the single bromo-bridge in 1, which is much stronger than that transmitted by the single chloro-bridge (J = −57.0 cm⁻¹). Very weak ferromagnetic interaction through the syn-anti carboxylate bridge J₂ is expected as it was observed in isomorphous Cu(2-qic)Cl (J = 0.37 cm⁻¹). For 2 a weak ferromagnetic couplings through the syn-anti carboxylate (zJ′ = 1.35 cm⁻¹) and dibromo-bridges (J = 8.31 cm⁻¹) were found. The experimental results indicate that the observed ferromagnetic exchange through dibromo-bridge is weaker than that in the chloride analog (J = 15.0 cm⁻¹). The magnitude of magnetic interactions is discussed on the basis of structural data of compounds 1 and 2 and their halide analogues.     

Structure and magnetic properties of polynuclear chloro- and hydroxo-bridged copper(II) complexes formed by a tetramacrocyclic derivative of 1,4,7-triazacyclononane

Two new copper(II) complexes of the ligand 1,2,4,5-tetrakis(1,4,7-triazacyclononan-1-ylmethyl)benzene (L^dur) have been synthesized and characterized by single crystal X-ray studies. The first, [Cu₄L^dur(μ₂-OH)₄]Cl₂(PF₆)₂ · 8H₂O (1), was isolated from a solution of L^dur and Cu²⁺ at pH 9. Under acidic conditions (pH 3), a polymeric complex, {[Cu₄L^dur(μ₂-Cl)₆](PF₆)₂ · 10H₂O}_n (2), crystallized from solution. In both complexes, each of the four triazacyclononane (tacn) rings of the L^dur ligand facially coordinate to separate metal centres. Pairs of Cu(II) centres are then doubly-bridged by hydroxo groups in 1, leading to tetranuclear complex cation units featuring pairs of isolated copper(II) dimers with Cu₂(μ₂-OH)₂ cores folded at the O?O lines. Two forms of the tetranuclear units, featuring slightly different Cu₂(μ₂-OH)₂ core geometries, are present in equal amounts within the crystal lattice. In complex 2, chloro bridging ligands link pairs of Cu(II) centres from neighbouring tetranuclear units, forming a 1D helical polymeric structure. Variable-temperature magnetic susceptibility measurements suggest that the hydroxo-bridged copper(II) centres within one of the tetranuclear units in 1 are weakly antiferromagnetically coupled (J = −27 cm⁻¹), whilst those in the other interact ferromagnetically (J = +19 cm⁻¹). Similar measurements indicate weak ferromagnetic coupling (J = +16 cm⁻¹) for the chloro-bridged copper(II) centres in 2.     

Extended structures of three new coordination polymers based on 1,10-phenanthroline derivatives and 1,4-benzenedicarboxylate mixed ligands: Preparation, structural characterization and properties

Three coordination polymers, namely, [Cd(HOIP)₂(1,4-bdc)] (1), [Cu(HOIP)(1,4-bdc)] (2) and [Cu(PDIP)(1,4-bdc)] (3) (HOIP = 2-(4-hydroxylbenzene) imidazo[4,5-f]1,10-phenanthroline, PDIP = 2-(3-pyridine) imidazo[4,5-f]1,10-phenanthroline, and 1,4-bdc = 1,4-benzenedicarboxylate), have been synthesized under the hydrothermal conditions. All complexes have been characterized by elemental analyses, IR and single-crystal X-ray diffraction. Structural analyses reveal that complex 1 possesses infinite one-dimensional (1D) chain bridged by 1,4-bdc ligands, complexes 2 and 3 both exhibit two-dimensional (2D) (4,4) network structures based on dinuclear [Cu₂O₂] units. However, the weak interactions are different in complexes 1-3. Moreover, the thermal properties of all complexes, fluorescence property of 1, and the electrochemical behavior of 3 are also reported in this paper.     

Syntheses, structures and magnetic properties of two new metal complexes based on a pyridyl-diphosphonate ligand

Two new first-raw transition metal diphosphonate complexes, namely, {[Ni₃([hpyedpH)₂(H₂O)₄]·(H₂O)₂}_n (1) and [Mn[hpyedpH₂](H₂O)]_n (2), based on a multidentate ligand 1-hydroxy-2-(3-pyridyl)-ethylidene-1,1-diphosphonic acid (hpyedpH₄) have been synthesized under hydrothermal reaction and structurally characterized by single-crystal X-ray diffraction, IR spectroscopy and element analyses. The data reveals that complex 1 is a 2D layer structure, whereas the complex 2 possesses a 1D motif. The powder X-ray diffraction (PXRD) patterns for complexes 1 and 2 were collected as well, which match well with the ones calculated from their single-crystal structure data. Magnetic measurements show that complex 1 is a ferrimagnet with T_c = 5.0 K. Magnetic studies of complex 2 indicate antiferromagnetic behavior.     

Zn(II) and Hg(II) complexes of naphthalene based thiosemicarbazone: Structure and spectroscopic studies

Synthesis, structure and spectroscopic characterization of 2-thiophenealdehyde-N(4)-napthylthiosemicarbazone and its complexes with biologically important Zn(II) and toxic Hg(II) metal ions have been reported. The crystal structure of the complexes reveals that both are distorted tetrahedral. In the Hg(II) complex the ligand is neutral and mondented where as in Zn(II) complex the ligand is bidented and anionic. Whereas conductivity measurement study shows both the complexes are molecular species. The beautiful changes in absorption spectra along with isosbestic points upon addition of respective metal salts to the ligand solution convincingly support the formation of metal complexes in solution phase. The other spectroscopic studies also show good correlation with their solid state structures.     

Synthesis, structures and properties of dinuclear cadmium(II) complexes based on polybenzimidazole binucleating ligands

Three novel cadmium(II) complexes [Cd₂(tbpo)(O₂CC₆H₄-p-NO₂)₂]ClO₄·3CH₃OH (1) [Cd₂(bbap)(O₂CC₆H₄-p-NO₂)₂]ClO₄·4.5CH₃OH·0.75H₂O (2) and [Cd(ntb)(O₂CC₆H₄-p-NO₂)]ClO₄·4CH₃OH (3) have been synthesized and characterized by IR, elemental analysis, ¹H NMR and X-ray crystallography, where tbpo⁻ and bbap⁻ are anions of N,N,N′,N′-tetrakis(2-benzimidazolylmethyl)-2-hydroxo-1,3-diaminopropane and 2,6-bis[bis(2-benzimidazolylmethyl)aminomethyl]-4-methylphenol, respectively; ntb is tris(2-benzimidazolymethyl)amine. Complexes 1 and 2 contain μ-phenolate-bridged and μ-alkoxo-bridged dicadmium(II) cores with the Cd1?Cd2 separation of 3.671 Å for complex 1 and 3.718 Å for 2. One of the 4-nitrobenzoate anions bridged the two cadmium(II) ions in syn-anti mode through its carboxylate group, the other 4-nitrobenzoate is only coordinated with Cd2 in bidentate chelating mode. The two central cadmium(II) atoms are in trigonal bipyramidal and pentagonal bipyramidal geometry. In complex 3, the cadmium(II) atom is coordinated with four nitrogen atoms of ntb and one carboxylate oxygen atom of 4-nitrobenzoate in distorted trigonal bipyramidal geometry. Experiment shows that there is a higher affinity of 4-nitrobenzoate anion as coligand with the dinuclear [Cd₂(tbpo)]³⁺ and [Cd₂(bbap)]³⁺ cores than that with the mononuclear [Cd(ntb)]²⁺ core.     

Structure of the PRYSPRY-domain: implications for autoinflammatory diseases

We determined the first structure of PRYSPRY, a domain found in over 500 different proteins, involved in innate immune signaling, cytokine signaling suppression, development, cell growth and retroviral restriction. The fold encompasses a 7-stranded and a 6-stranded antiparallel beta-sheet, arranged in a beta-sandwich. In the crystal, PRYSPRY forms a dimer where the C-terminus of an acceptor molecule binds to the concave surface of a donor molecule, which represents a putative interaction site. Mutations in the PRYSPRY domains of Pyrin, which are responsible for familial Mediterranean fever, map on the putative PRYSPRY interaction site.     

Two heterometal-organic coordination polymers with chelidamic acid: Syntheses, structures and optical properties

Two heterometal-organic coordination polymers with chelidamic acid ligands, [AgNd(C₇H₃NO₅)₂·3H₂O]_n (1) and 0.75H₃O·[K_0.25Nd(C₇H₃NO₅)₂·3H₂O]·1.75H₂O (2), have been synthesized and characterized by X-ray single-crystal diffraction. The crystal structure of 1 features that chelating units composed of one Nd(III) ion and two tridentate chelating chelidamic acid ligands are connected by the Ag(I) ions to form a one-dimensional chain, further linked by hydrogen bonds into a 3D network. As for 2, discrete independent molecules, made up of Nd(III) and K(I) ions and chelidamic acid ligands, are linked through the hydrogen bonds to form a 1D chain, which are further inter-linked through the complex hydrogen bonds to form a 3D network. The optical properties of 1 and 2 were investigated in terms of fluorescent spectra, which both exhibit good luminescence.     

Crystal structures and spectroscopic properties of palladium complexes isolated from Pd-EDTA solutions

Two complexes were isolated from aqueous Pd(NO₃)₂-Na₂H₂EDTA solutions and studied by single crystal X-ray diffraction, IR/Raman spectroscopy, and photoelectron spectroscopy. The first complex, Pd(Hkpda)₂ (kpda = ketopiperazinediacetate dianion, C₈H₁₀N₂O₅), forms yellow parallelepipeds during slow evaporation of Pd(NO₃)₂-Na₂H₂EDTA solution at 25 °C, and is a result of EDTA oxidation. The second one, [Pd(μ-H₂EDTA)]₂ · 2NaNO₃ · 7.5H₂O, with two EDTA molecules acting as bridges between two palladium atoms, forms yellow bipyramides during fast evaporation at 60 °C. In both complexes, the palladium atoms adopt a planar trans-geometry by bonding to two nitrogen and two oxygen atoms of two ligand molecules.     

Structure and biological properties of the copper(II) complex with the quinolone antibacterial drug N-propyl-norfloxacin and 2,2'-bipyridine

The neutral mononuclear copper complex with the quinolone antibacterial drug N-propyl-protected norfloxacin, Hpr-norfloxacin, in the presence of the nitrogen donor heterocyclic ligand 2,2'-bipyridine has been prepared and characterized. The crystal structure of (chloro)(2,2'-bipyridine)(pr-norfloxacinato)copper(II), 1, has been determined and refined with X-ray crystallography. X-band electron paramagnetic resonance (=EPR) spectroscopy at liquid helium temperatures from powdered samples indicates the presence of dimeric units in consistency with the crystal structure. In aqueous solutions of 1 the EPR behavior indicates mixture of dimeric and monomeric species. The antimicrobial activity of the complex has been tested on three different microorganisms and the best inhibition (MIC=0.25mugmL(-1)) has been exhibited against Escherichia coli. The study of the interaction of the complex with calf-thymus DNA has been performed with diverse spectroscopic techniques and has shown that complex 1 is bound to calf-thymus DNA by the intercalative mode. Potential anticancer cytostatic and cytotoxic effects of complex 1 on human promyelocytic leukemia HL-60 and human chronic myelogenous leukemia K562 cell lines have been investigated. Complex 1 shows an increased antiproliferative and necrotic effect on both HL-60 and K562 human leukemia cells in comparison to the free pr-norfloxacin.     

Structure of a novel class II phospholipase D: catalytic cleft is modified by a disulphide bridge

Phospholipases D (PLDs) are principally responsible for the local and systemic effects of Loxosceles envenomation including dermonecrosis and hemolysis. Despite their clinical relevance in loxoscelism, to date, only the SMase I from Loxosceles laeta, a class I member, has been structurally characterized. The crystal structure of a class II member from Loxosceles intermedia venom has been determined at 1.7 Å resolution. Structural comparison to the class I member showed that the presence of an additional disulphide bridge which links the catalytic loop to the flexible loop significantly changes the volume and shape of the catalytic cleft. An examination of the crystal structures of PLD homologues in the presence of low molecular weight compounds at their active sites suggests the existence of a ligand-dependent rotamer conformation of the highly conserved residue Trp230 (equivalent to Trp192 in the glycerophosphodiester phosphodiesterase from Thermus thermophofilus, PDB code: 1VD6) indicating its role in substrate binding in both enzymes. Sequence and structural analyses suggest that the reduced sphingomyelinase activity observed in some class IIb PLDs is probably due to point mutations which lead to a different substrate preference.     

Cyclic metal-radical complexes based on 2-[4-(1-imidazole)phenyl]-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide: Syntheses, crystal structures and magnetic properties

Using new nitronyl nitroxide radical ligand 2-[4-(1-imidazole)phenyl]-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide (NITPhIm), three new complexes [M(hfac)₂(NITPhIm)]₂ (M = Cu(II) 1, Mn(II) 2, Co(II) 3; hfac = hexafluoroacetylacetonate) have been prepared. Three complexes possess cyclic dimer structure in which each NITPhIm radical links two different metal ions through the oxygen of nitroxide group and the nitrogen of imidazole. The magnetic studies show the copper(II) ion interacts ferromagnetically with the directly bonding nitronyl nitroxide while manganese(II) and cobalt(II) ions strong antiferromagnetically interact with the directly coordinated nitroxide groups. There is a weak antiferromagnetic coupling between the metal ion and the nitroxide through phenyl and imidazole rings of the radical ligand, which is agreement with spin polarization mechanism. The results show that the minor changes in the structure of radical ligand can change the magnetic behavior of radical-metal complex.     

Synthesis, crystal structure, and properties of two sandwich-type tungstovanadates

Two dimeric tungstovanadates of the form [M₄(H₂O)₂(VW₉O₃₄)₂]¹⁰⁻ (M = Mn^II, Co^II) were synthesized and characterized by elemental analysis, thermogravimetric analysis and infrared spectroscopy. X-ray single crystal analysis revealed that the two polyanion clusters with isomorphic structure consist of two lacunary [VW₉O₃₄]⁹⁻ Keggin moieties linked by four Mn^II or Co^II ions, forming a sandwich-type structure. The temperature-dependent magnetic susceptibility measurements showed a dominant antiferromagnetic interaction in complex 1, while ferromagnetic interactions were found in complex 2. The electrochemical behaviors of complexes 1 and 2 were investigated in buffer solution at pH 4.8. Surface photovoltage spectroscopy (SPS) and electric field-induced SPS (EFISPS) revealed that complex 1 bears the behavior of an n-type semiconductor, while complex 2 shows no obvious signal.     

Structure of variant 2 scorpion toxin from Centruroides sculpturatus Ewing

Centruroides sculpturatus Ewing variant 2 toxin (CsE-v2) is a neurotoxin isolated from the venom of a scorpion native to the Arizona desert. The structure of CsE-v2 was solved in two different crystal forms using a combination of molecular replacement and multiple isomorphous replacement techniques. Crystals of CsE-v2 display a temperature-dependent, reversible-phase transition near room temperature. At lower temperature the space group changes from P3(2)21 to P3(1)21 with an approximate doubling of the C-axis. The small-cell structure, which has one molecule per asymmetric unit, has an R factor of 0.229 at 2.8 A resolution. The large-cell structure has two molecules per asymmetric unit and was refined at 2.2 A resolution to an R factor of 0.255. CsE-v2 is a rigid, compact structure with four intrachain disulfide bonds. The structure is similar to other long-chain beta neurotoxins, and the largest differences occur in the last six residues. The high-resolution structure of CsE-v2 corrects an error in the reported C-terminal sequence; the terminal tripeptide sequence is Ser 64-Cys 65-Ser 66 rather than Ser 64-Ser 65-Cys 66. Comparison of CsE-v2 with long-chain alpha toxins reveals four insertions and one deletion, as well as additional residues at the N and C termini. Structural alignment of alpha and beta toxins suggests that the primary distinguishing feature between the two classes is the length of the loop between the second and third strands in a three-strand beta sheet. The shorter loop in alpha toxins exposes a critical lysine side chain, whereas the longer loop in beta toxins buries the corresponding basic residue (either arginine or lysine).