酵母双杂交相关方法的改良及应用

对酵母双杂交实验过程中较为耗时的阳性克隆鉴定过程进行改进,以期建立一种快速有效的鉴定方法。分别采用液氮冻融法、超声破碎法、渗透压破壁法以及煮沸裂解法裂解酵母细胞,获得质粒作为PCR模板,直接测序鉴定筛选到的相互作用蛋白。以液氮冻融法和超声破碎法裂解细胞获得的质粒为模板进行PCR,得到特异的产物,测序鉴定结果明确,与经典的鉴定方法相比效果相当,但更加经济快捷;而渗透压破壁法和煮沸裂解法则效果不好。说明前两种方法可代替常规方法用于阳性克隆的鉴定,从而加快酵母双杂交实验中大量阳性克隆的筛查工作。     

The use of an enzymatic kit to measure plasma creatinine in the mouse and three other species

Plasma creatinine concentrations were determined in mice, rats, dogs and humans using a kinetic alkaline picrate method and an enzymatic method with a centrifugal analyser. Lower creatinine values were obtained for all four species using the enzymatic method, but the differences between methods were greater for mice and rats. Removal of creatininase from the enzymatic method reagents gave proportionally higher values for non-creatinine chromogens in mice and rats. A single enzymatic method was not specific for creatinine when used for these species.     

Evaluation of real-time PCR vs automated ELISA and a conventional culture method using a semi-solid medium for detection of Salmonella

AIMS: Evaluation of iQ-Check PCR Salmonella for Salmonella detection in artificially and naturally contaminated food and environmental field samples. METHODS AND RESULTS: Artificially contaminated samples (poultry meat and ground red meat) subjected to cold- and freeze-stress, and 120 naturally contaminated samples (swabs and meat) were tested for Salmonella using the diagnostic semi-solid Salmonella medium (DIASALM) method, the Vidas assay and the iQ-Check PCR assay after 24 h enrichment in buffered peptone water. CONCLUSIONS: Both the iQ-Check PCR and the Vidas assay provide a rapid and user friendly screening method for detection of Salmonella. False negative samples were obtained for the inoculated samples using both the iQ-Check PCR assay and the Vidas method when Salmonella cells were severely stressed. In total 45 of 120 naturally contaminated field samples showed Salmonella positive using the DIASALM method. The agreement percentage with the DIASALM method was respectively 92% for the iQ-Check PCR and 95% for the Vidas method. SIGNIFICANCE AND IMPACT OF THE STUDY: False-negative samples were obtained for the inoculated samples using both the iQ-Check PCR assay and the Vidas method when Salmonella cells were severely stressed, e.g. freezing at -18 degrees C for 7 days. Of the 120 naturally contaminated field samples 45 showed Salmonella positive using the DIASALM method. The agreement percentage with the DIASALM method was 92% for the iQ-Check PCR and 95% for the Vidas method respectively.     

一种早期胚胎体外培养新方法的建立

建立一种不依赖于液体石蜡的早期胚胎体外培养方法——套皿法,并比较了4种不同处理方法体外培养胚胎的效果。结果显示,采用套皿法进行胚胎培养,盖液体石蜡和不盖液体石蜡皿中的胚胎在各阶段的发育率差异不显著。与套皿法相比,用单皿微滴覆盖法(Brinster法)培养的胚胎在各阶段的发育率显著降低。不覆盖液体石蜡单皿中的胚胎则阻断于二细胞阶段。实验设计的套皿法是一种有效的早期胚胎体外培养方法,为早期胚胎体外培养提供了一种新方法。     

不同营养评价方法对住院患者营养状况评价的比较及意义

目的:分析比较身高标准体重法、体质指数法(BMI法)、体质指数校正法与生物电阻抗测量方法在住院患者营养评价中的意义。方法:随机抽取我院内科176名患者作为观察对象,用以上4种方法分别进行营养状况评价,测量结果采用单因素卡方分析法和Ridit分析比较。结果:用4种方法评价同一群体住院病人的营养状况时,其结果的差异有显著意义。结论:评判体脂和肥胖时应该首选能反映身体脂肪量及比例和身体内脂肪分布的腰臀比指标。标准体重法、BMI法和BMI校正法三种方法,在评价住院患者的营养状况时,最好能将腰臀比指标与其他指标共同使用。     

4种黑曲霉基因组DNA提取方法的比较

目的:筛选适合提取曲霉DNA的方法.方法:比较2个菌落培养时间段(3d内和10d左右)提取DNA质量的差异;运用氯化苄法、石英砂+CTAB法、Biospin法和微波法分别提取黑曲霉基因组DNA,然后用直接电泳、浓度测定、PCR扩增等方法比较所提DNA的浓度和质量.结果:培养3d内的菌落提取的DNA纯度较高,无需纯化即可用于后续实验;4种方法制备的DNA均可用于PCR等后续实验,其中以石英砂+CTAB法提取的DNA纯度好,产率最高.结论石英砂+CTAB法是一种适用于曲霉DNA提取的简便方法.     

Pyrosequencing of a short fragment of the amelogenin gene for gender identification

We report a pyrosequencing method for detecting a short amelogenin fragment to aid the gender identification. The PCR products (44/45 bp), including primers and target sequence (4/5 bp) consisting of three point mutations and one indel mutation, were sequenced by the pyrosequencing method. 100 randomly chosen DNA samples of healthy donors were analyzed with this method, and all of them were correctly typed. The sensitivity of the technique was 0.5 ng template DNA. No specific peak was found in any detected animals or organisms except for monkey. For blood samples that were left outside for 26 weeks and DNA degraded artificially by digesting with DNaseI, this method gave more accurate results than the conventional method. Moreover, four bone samples analyzed using the method gave clear pyrograph. This method is easy, quick, cheap and suitable for high-throughput analysis, especially for identifying the gender of highly-degraded DNA samples.     

A method for characterizing ultrasonically-derived follicular data in heifers

A method was developed for ultrasonically characterizing follicular waves in heifers without the necessity of maintaining day-to-day identities of individual follicles (nonidentity method). Results were compared to a method in which the identities of individual follicles were maintained from day to day (identity method). Data collected daily during 5 estrous cycles were processed by each method, independently, by different operators. The nonidentity method involved grouping and then profiling follicles in order of decreasing diameters without regard to day-to-day identities. The profiling scheme distinguished between follicles of the left versus the right ovary. The dominant and subordinate follicles were readily distinguishable in the nonidentity profiles. When successive dominant follicles developed in the opposite ovary, the follicles were profiled directly. When two successive dominant follicles developed on the same ovary, size information was obscured for a few days where the profiles for each follicle crossed, but continuity of the profiles on each side of the area of ambiguity was maintained. The nonidentity method seemed equivalent to the identity method in determining characteristics of the dominant follicle (e.g., maximal diameter, growth rate, regression rate). Day of emergence of a wave and day of divergence in diameters between dominant and subordinate follicles were readily determined by inspection of the nonidentity profiles. A greater number of subordinate follicles per wave was detected by the nonidentity method due to the inability to individually identify all detected follicles by the identity method. Regression of follicles from a previous wave into the subordinate follicles of a succeeding wave was apparent by either method. The nonidentity method seemed suitable for most needs, was less tedious, and required less skill than the identity method.     

Evaluation of sampling methods and development of sample plans for estimating predator densities in cotton

The cost-reliability of five sampling methods (visual search, drop cloth, beat bucket, shake bucket, and sweep net) was determined for four groups of predatory arthropods on cotton plants in Texas. The beat bucket sample method was the most cost-reliable sampling method for Orius adults, and the beat bucket and drop cloth were the most cost-reliable methods for Orius nymphs. The drop cloth and beat bucket were the most cost-reliable methods for sampling spiders. For sampling adult Coccinellidae, the sweep net and the beat bucket were the most cost-reliable. The visual sample method was the least cost-reliable method for Orius adults and nymphs and spiders. No one sampling method was identified as the optimum method for all four predator groups. However, the relative cost-reliability of the beat bucket method ranked first or second among the five sampling methods and this method was chosen for further evaluation in field studies in Texas and Arizona. The relative cost-reliability of 1-, 3-, 5-, and 10-plants per beat bucket sample varied with predator group, but multiple plant sample units were equal to or more cost-reliable than the one plant sample unit. Fixed sample plans for the beat bucket method were developed for Orius adults, Orius nymphs, spiders, and adult Coccinellidae, and the sum of these groups using the 3-, 5-, and 10-plant sample unit sizes. The greater cost-reliability of the beat bucket sampling method and its ease of use is of particular advantage in assessing predator densities in a commercial cotton field monitoring program.     

A comparison of four methods for measuring roots of field crops in three contrasting soils

Rooting measurements have been made at different growth stages for sugar beets (1987) and for cereals (1988) on three different sites using four different root measurement techniques: (a) the core method where roots were extracted and root length is directly measured, (b) the core-break method where the visible roots were counted on the faces of a broken soil column, (c) the trench profile wall method where the number of visible roots were counted and the root length density was estimated on a profile wall, and (d) the monolith method where the roots were extracted from monoliths dug out from a profile wall. The calibration curves between the field methods and the extraction methods were not linear, and regression coefficients differed significantly between different sites, crops and between fields with different agronomic management, e.g. irrigation and liquid manure application. Differences between growth stages were comparably low compared with those found between locations. Root length densities obtained with the trench profile method were on average 10-fold lower in the sand brown earth, 6-fold lower in the vertisol and 4 times lower in the cambisol compared to data obtained with the core method. It is therefore concluded that the core-break method and the trench profile wall method deliver no reliable data for comparing rooting intensities between different soils and between different crops if they are not calibrated with an extraction method for each site and crop.     

一种利用Profile-1生物发光仪快速测定土壤中微生物量的改良方法

开发了一种利用Profile-1生物发光仪测定土壤中微生物量的改良方法,并以此方法分别测定了标准大肠杆菌茵液以及3种不同类型的土壤(九段沙湿地土壤,崇明东滩大田土壤和崇明实验地改良土壤)的微生物量,并将结果与Profile-1生物发光仪自带的标准分析方法以及传统的菌落计数法进行比较。结果显示,改良的ATP提取方法(BAB改良分析法)和Profile-1生物发光仪自带的标准分析方法都可用于液体样品中微生物量的测定,其灵敏度和准确度无显著差异(P0.05)。但在测定土壤样品时,菌落计数法测定结果大约占BAB改良分析法测定结果的1%～5%,占Profile-1生物发光仪自带的标准分析方法的测定结果的22%～99%。这表明在分析土壤样品时,BAB改良分析法较Profile-1生物发光仪自带的标准分析方法的ATP提取效率更高,可显著提高仪器检测土壤样品的灵敏度和可靠性,因此可有效应用于各类土壤的微生物量的监测,为土壤环境监控提供微生物量的可靠数据。     

Why do people choose particular methods for suicide?

A study of people's reasons for choosing a method for suicide indicated that females are more concerned with quickness, painfulness and disfigurement, but less concerned with the availability of the method. Those choosing guns were more concerned about the quickness of the method and less concerned about disfigurement. These results were discussed for their implications as to whether people will switch methods for suicide if one method is made less easily available.     

Does the condylar lift-off method or the separation method better detect loss of contact between tibial and femoral implants based on analysis of single-plane radiographs following total knee arthroplasty?

BackgroundLoss of contact between the femoral and tibial implants following total knee arthroplasty (TKA) has been related to accelerated polyethylene wear and other complications. Two methods have been used to detect loss of contact in single-plane fluoroscopy, the condylar lift-off method and the separation method. The objectives were to assess the ability of each method to detect loss of contact.MethodsTKA was performed on ten cadaveric knee specimens. Tibial force was measured in each compartment as specimens were flexed from 0° to 90° while internal-external and varus-valgus moments were applied. Single-plane radiographs taken simultaneously with tibial force were analyzed for loss of contact using the two methods. Receiver operating characteristic (ROC) and optimum threshold distances were determined.ResultsFor the lift-off method and the separation method, the areas under the ROC curves were 0.89 vs 0.60 for the lateral compartment only and 0.81 vs 0.70 for the medial compartment only, respectively. For the lift-off method, the optimum threshold distances were 0.7 mm in the lateral compartment only and 0.1 mm in the medial compartment only but the false positive rate for the medial compartment only almost doubled. For both compartments jointly, the areas under the ROC curves decreased to 0.70 and 0.59 for the lift-off and separation methods, respectively.ConclusionWhen detecting loss of contact using single-plane fluoroscopy, the lift-off method is useful for the lateral compartment only but not for the medial compartment only and not for both compartments jointly. The separation method is not useful.     

Automated Enzymatic Method for the Determination of Ammonia: Application to Rumen Fluid, Gut Fluid, and Plasma

The enzymatic method for the determination of ammonia with glutamate dehydrogenase has been adapted to the AutoAnalyzer. The automated method was applicable for NH₃ measurement in sheep rumen samples, swine gut fluid samples, and bovine plasma. Results were compared with those of the Conway diffusion method and the manual enzymatic method. The automated method allows 30 samples per h to be analyzed routinely. Values were comparable with those with the manual method, but lower than those with the Conway diffusion method.     

条斑紫菜丝状体总RNA提取方法比较

目的:为了获得质量较高的条斑紫菜丝状体总RNA,对几种常用提取方法进行研究。方法:以条斑紫菜自由丝状体为材料,比较了用异硫氰酸胍法、CTAB法、SDS/酚法、TRIzol法、RNAplant法提取的RNA的质量和纯度。结果:异硫氰酸胍法提取RNA的成本低,但纯度不高;CTAB法产率较小,且不能完全去除多糖或蛋白质;SDS/酚法未能获得完整的RNA;TRIzol法未能见到5SrRNA条带,且带有杂带;而RNAplant法提取RNA的质量好、纯度高、提取效率高,其D260nm/D280nm值为1.836,经逆转录得到的双链cDNA扩增产物长度在200bp以上。结论:实验结果表明RNAplant法更适于条斑紫菜丝状体总RNA的提取。     

森林生态系统CO2通量的研究方法及研究进展

介绍了测量森林生态系统CO2通量的微气象法和箱式法。其中,微气象学方法着重介绍了涡旋相关法和驰豫涡旋积累法的基本原理及数据分析过程中应注意的问题。并简要介绍了能量平衡法和空气动力学法。箱式法主要介绍了其测定基本原理和数据的模型化处理及应注意的问题。同时,对近年来欧洲和美洲在森林生态系统CO2通量研究中所取得的进展进行了概述。     

皱边石杉内生真菌DNA提取有效方法比较

目的:优化确定适用于皱边石杉内生真菌DNA提取的有效方法,并评价其效果。方法:运用氯化苄改良法、CTAB改良法分别提取皱边石杉内生真菌菌丝体DNA。结果:氯化苄改良法可从17个内生真菌菌丝体中均获得了高质量的DNA,除5、13、14号生长缓慢的内生真菌其菌丝体DNA浓度≤60ng/μL,其余样品的DNA浓度均≥200ng/μL。而CTAB改良法仅适宜于平板培养菌落生长迅速、菌落疏松,发酵培养菌丝体产量高的1、2、3、9、10、12号菌株。结论:氯化苄改良法是适宜于皱边石杉内生真菌DNA提取的理想方法。     

临床标本细菌基因组DNA提取方法探讨

目的优化细菌基因组DNA提取方法,使其适合临床细菌分子生物学检测需要。方法分别采用专用DNA提取液法、热裂解法、溶菌酶法、热裂解法与碱性裂解法组合改良法,对纯培养细菌和临床标本中细菌基因组DNA进行提取。结果专用DNA提取液法、溶菌酶法提取成功率为100%,热裂解法革兰阳性菌提取成功率为0%,革兰阴性菌成功率为100%,碱性裂解液法在NaOH浓度大于4 mmol时提取成功,临床标本在NaOH溶液超过20 mmol/L并含2%SDS时细菌基因组DNA的提取成功率为100%。结论热裂解法与碱性裂解法组合改良法提取细菌基因组DNA方便快速、简单实用,适用临床标本检测。     

不同方法分离的成人睾丸支持细胞与胰岛共移植的效果对比

目的比较成人睾丸支持（Sertoli）细胞不同分离方法的效果,建立成人Sertoli细胞简便高效的分离方法。方法将质量相等的睾丸组织按照不同分离方法随机分为3组：A组采用胰蛋白酶、DNA酶、胶原酶和透明质酸酶一步消化法;B组采用胰蛋白酶和DNA酶第一步消化,胶原酶和透明质酸酶第二步消化;C组采用胰蛋白酶和DNA酶第一步消化,透明质酸酶第二步消化,胶原酶第三步消化;D组为对照组。采用形态学观察和免疫组化鉴定Sertoli细胞;MTT法和流式细胞仪法测定3组Sertoli细胞的活性和纯度;应用生存分析方法比较3组Sertoli细胞与胰岛共移植至糖尿病鼠的效果。结果分离获得的细胞经形态学和免疫组化鉴定,具有Sertoli细胞的特征,A、B、C三组Sertoli细胞的纯度分别为（85．17±1．8）％、（92．33±2．5）％和（93．12±2．6）％,B组和C组的Sertoli细胞纯度显著高于A组（t=7．35,t=7．95,P=0．00,P=0．00）。B组Sertoli细胞活性于培养14d时达到峰值,此后缓慢下降。B组Sertoli细胞活性显著高于A组和C组（t=4．02,t=2．77,P=0．00,P=0．01）,且B组Sertoli细胞与胰岛共移植术后胰岛移植物存活时间显著高于A、c、D组（F=165．548,P=0．000）。结论采用两步消化的方法能够获得纯度和活性较高的Sertoli细胞,其与胰岛共移植能够显著延长移植物存活。     

三种人全血基因组DNA提取方法的比较

目的：比较改良酚一氯仿抽提法、盐析法、试剂盒法从人全血中提取基因组DNA的效果,以期建立一种快速、经济的提取高质量基因组DNA的方法。方法：分别用上述三种方法从人全血中提取基因组DNA,通过紫外分光光度计、琼脂糖凝胶电泳、聚合酶链式反应（PCR）、限制性内切酶酶切检测提取的基因组DNA的产量、纯度和质量。结果：改良酚一氯仿抽提法与试剂盒法提取的基因组DNA相比,DNA的产量有统计学差异,DNA的纯度无统计学差异,但试剂盒法提取的基因组DNA有较明显的降解现象：盐析法与改良酚．氯仿抽提法、试剂盒法相比,基因组DNA的产量和纯度都存在统计学差异,并且基因组DNA聚合酶链式反应（PCR）扩增的稳定性也明显劣于另外两种方法;三种方法提取基因组DNA均能进行限制性内切核酸消化。结论：改良酚一氯仿抽据取法是一种经济、快速、高效、稳定提取人全血基因组DNA的方法,适用于批量临床标本处理。