Isolation and characterization of microsatellite loci for Florida largemouth bass, Micropterus salmoides floridanus, and other micropterids

We isolated and characterized 52 novel microsatellite markers from Florida largemouth bass, Micropterus salmoides floridanus, for use in conservation, management and population genetic studies. Markers were assessed in M. s. floridanus from peninsular Florida (n = 30) and averaged eight alleles per locus with observed heterozygosity of 0.57 (range 0–0.97). Cross‐taxa amplification was successful among 88% of tested congeners. These polymorphic and potentially taxon‐diagnostic markers contribute to the limited number of microsatellites currently available for micropterids and specifically M. s. floridanus.     

Hunting behavior of Florida largemouth bass, Micropterus salmoides floridanus, in a channelized river

The distribution and behavior of Florida largemouth bass, Micropterus salmoides floridanus, and their main prey (sunfish, genus Lepomis, and the cichlid Tilapia mariae) were studied in southern Florida to determine how fish behave in the simplified habitats found in channelized rivers. Time budgets were constructed from focal animal observations on 69 bass. Patterns of behavior associated with hunting were performed during a significantly higher proportion of the time when bass were in vegetated habitats. Scan samples of the behavior of 236 observed bass revealed that hunting was more common in areas of high structural complexity. Only 38% of observed bass were solitary, with the majority occurring in groups with either conspecifics or in mixed-species groups with similar sized bluegill sunfish, Lepomis macrochirus. Largemouth bass (n=1014) and sunfish (n=1372) were significantly more abundant in areas with vegetation and were almost entirely absent from the water column in the center of the canal. All species of fish avoided the water column, where currents were swift and no cover was available. The structure of the habitat appears to be important in the way largemouth bass organize their activity patterns. This suggests that habitat availability in channelized rivers significantly influences important behaviors such as hunting, thus potentially altering energy budgets and population dynamics of both predator and prey.     

The diet of largemouth bass, Micropterus salmoides, in Lake Naivasha, Kenya

Lake Naivasha is a freshwater lake situated in the eastern rift valley of Kenya. Only five species of fish are present, all of which have been introduced. Of these, Oreochromis leucostictus, Tilapia zillii and Micropterus salmoides (largemouth black bass) support an important gillnet fishery with bass also being taken for sport. Until bass reached 260 mm f.l. they depended upon invertebrate food organisms. Thereafter crayfish, fish and frogs became increasingly important the larger the size of the bass. The most important invertebrate prey species was the water boatman, Micronecta scutellaris , followed by chironomid and culicid pupae. Zooplank-ton was consumed but only in large quantity by fish smaller than 80 mm. For bass over 260 mm the crayfish, Procambarus darkii , was the principal food. The largemouth bass in Lake Naivasha are generalized macro-predators, feeding principally on free-living animals of a kind most likely to be found in the littoral zones.     

Aquatic vegetation and largemouth bass population responses to water-level variations in Lake Okeechobee,Florida (USA)

A five-year study examined the responses of submerged aquatic vegetation (SAV), emergent vegetation, and largemouth bass (Micropterus salmoides) to variations in water level in a large lake in Florida, USA. SAV was assessed using a combined transect survey/spatial mapping approach, emergent vegetation was quantified with aerial photography and GIS, and bass were surveyed by electro-shocking. During the period leading up to this study (1995–1999), water levels were high in the lake, and the SAV was reduced in spatial extent and biomass, compared to its condition in the early 1990s. Spatial extent of emergent vegetation also was low, and largemouth bass surveys indicated low densities and failure to recruit young fish into the population. This was attributed to the lack of critical vegetative habitat. In spring 2000, the lake was lowered by discharging water from major outlets, and this was followed by a regional drought. Water levels dropped by 1m, and there was widespread development of Chara lawns in shoreline areas, with coincident increases in water clarity. There was some germination of vascular SAV, but Chara was the extreme dominant, such that structural complexity remained low. There was no substantive improvement in bass recruitment. During 2001, water levels declined further, and emergent plants germinated in exposed areas of the lake bottom. SAV was restricted to sites farther offshore, and continued to be dominated by Chara. There again was no bass response. In 2002, conditions changed when water levels increased to a moderate depth, flooding shoreline habitat to 0.5m. Vascular SAV increased in biomass and spatial extent, such that the community developed a high structural complexity. At the same time, emergent aquatic plants developed dense stands along the western shoreline. Largemouth bass had a strong recruitment of young fish for the first time in 5years. Recruitment continued to be successful in 2003, when spatial extent of SAV was somewhat reduced by higher water but total biomass and diversity remained high. These results demonstrate an important effect of inter-annual variation in water depth on the population dynamics of aquatic plants and fish in a subtropical lake.     

Impact of exotic fish removal on native communities in farm ponds

Introduced largemouth bass (Micropterus salmoides spp.) and bluegill (Lepomis macrochirus spp.) are thought to threaten native aquatic organisms worldwide and hence their eradication has recently begun in Japan. Our previous studies suggested that the removal of largemouth bass increases native fish, shrimp, dragonflies, and exotic crayfish, but decreases macrophytes. To test this prediction, we removed the exotic fishes by draining farm ponds and compared the numbers of these organisms before and after the drain, as well as between drained and undrained ponds. The number of dragonfly Pseudothemis zonata, crayfish, shrimp, and goby increased rapidly after the drain, but the coverage of macrophyte declined. The reduction in macrophyte is assumed to be caused by increased herbivory by crayfish. The number of exuviae of damselfly Cercion calamorum and the total number of species of odonate also decreased after the drain. These decreases can be due to the reduction of macrophyte because reduced odonate species are known to use macrophytes as oviposition sites. Therefore, the removal of largemouth bass has a potential to cause negative effects on some native organisms. We propose that reduction of exotic crayfish should be considered when eradicating the exotic fishes.     

The complete mitochondrial genomes of largemouth bass of the northern subspecies (Micropterus salmoides salmoides) and Florida subspecies (Micropterus salmoides floridanus) and their applications in the identification of largemouth bass species

The largemouth bass belongs to the family Centrarchidae, which includes two subspecies: the northern subspecies, Micropterus salmoides salmoides, and the Florida subspecies, Micropterus salmoides floridanus. In this study, the complete mitochondrial genomes of the two subspecies were sequenced, and their genetic differences were identified. The mitogenomes of M. s. salmoides and M. s. floridanus are 16,486 and 16,479?bp in length, respectively. The two subspecies consisted of 37 genes (13 protein-coding genes, 2 ribosomal RNA, and 22 transfer RNA), which are typical for vertebrate mtDNA. Phylogenetic analysis provided statistical support for the monophyly of the family Centrarchidae. Comparison of the two subspecies' mitogenomes revealed a relatively high number (450) of single nucleotide polymorphisms (SNPs) in protein-coding genes. We characterized SNPs in the partial cytochrome c oxidase subunit 1 gene of different individuals from three cultured populations, one wild northern subspecies population, and one wild Florida subspecies population. Twenty-eight SNPs were fixed with alternative nucleotides in the two subspecies, which could be used for differentiating them. Based on this gene, phylogenetic tree and genetic distance analyses supported that cultured largemouth bass in China belongs to the northern subspecies.     

Morphological correlates of swimming activity in wild largemouth bass (Micropterus salmoides) in their natural environment

Individual variation in morphology has been linked to organismal performance in numerous taxa. Recently, the relationship between functional morphology and swimming performance in teleost fishes has been studied in laboratory experiments. In this study, we evaluate the relationship between morphology and swimming activity of wild largemouth bass (Micropterus salmoides) during the reproductive period, providing the first data derived on free-swimming fish not exposed to forced swim trials in the laboratory. Sixteen male largemouth bass were angled from their nests, telemetered, and subsequently monitored by a whole-lake acoustic hydrophone array with sub-meter accuracy. Additionally, eleven morphological measurements were taken from digital images of each fish. A principal components analysis of the morphological measurements described 79.8% of the variance. PC1 was characterized by measures of overall body stoutness, PC2 was characterized by measures of the length and depth of the caudal region, and PC3 characterized individuals with relatively large anterior portions of the body and relatively small caudal areas. Of these variables, only PC3 showed significant relationships to swimming activity throughout the parental care period. PC3 was negatively correlated with multiple measures of swimming activity across the parental care period. Furthermore, swimming performance of individual male bass was noted to be repeatable across the parental care period indicating that this phenomenon extends beyond the laboratory.     

Annual cycles of growth and reproduction in hatchery–reared Florida largemouth bass, Micropterus salmoides floridanus, raised on forage or pelleted diets

Annual cycles of growth and reproduction of hatchery–reared Florida largemouth bass, Micropterus salmoides floridanus , were investigated. Animals were raised on either forage (goldfish, Carassius auratus ) or a pelleted salmon feed. Male and female year–class 1 largemouth bass were sampled throughout one complete yearly cycle (January–December). A biphasic growth cycle was observed in both forage–fed and pellet–fed fish. No increase in body length or weight was observed until approximately midway through the spawning period (May), after which fish grew at a consistent rate for the remainder of the study. The reproductive cycle of forage–fed fish was characterized by a rapid increase in gonadosomatic index (GS1) between January and April, followed by a prolonged spawning period (April–July) during which GSI progressively declined. Fully regressed gonads were observed in September and October, and a resumption of gonadal recrudescence was observed between October and December. Visceral adipose deposits (expressed as mesenteric fat index; MFI) were resorbed during gonadal growth and the initial stages of the spawning period, and restored during the post–spawning phase. Fish raised on pelleted feed had growth and reproductive cycles that parallelled those of forage–fed fish, but several significant differences were observed between the two diet groups. During the growth phase of the cycle, pellet–fed largemouth bass grew significantly faster than forage–fed largemouth bass, and had significantly larger MFIs than forage–fed largemouth bass at all times of the year. Pellet–fed fish also had significantly larger GSIs than forage–fed fish. These data indicate that diet composition may be an important determinant of growth and reproductive function in this species.     

Benthic assemblages of wetlands invaded by Tarebia granifera (Lamarck, 1822) (Caenogastropoda: Thiaridae) in the iSimangaliso Wetland Park,South Africa

Tarebia granifera is a freshwater/estuarine gastropod invading many tropical and sub-tropical areas around the world. This snail is native to southeast Asia and was accidentally introduced into South Africa during the last decade. The current study investigated shallow-water benthic assemblages of different invaded and uninvaded localities across locations spanning a large range of environmental conditions in the iSimangaliso Wetland Park. Using a correlation-based approach, we found that native benthic assemblages were more closely associated with environmental conditions than with densities of T. granifera. However, there were significant negative correlations between T. granifera abundance and Shannon Diversity at two of the invaded locations. This alien species has successfully invaded, and become dominant in, different types of water bodies with different assemblage compositions and physico-chemical characteristics, ranging from freshwater ponds to saline estuaries and lakes. The current data set is presented as an essential baseline for future studies. It is recommended that future work focuses on specific localities, in order to determine if changes in diversity are driven by non-native species or by other disturbances (e.g., climate change).     

Predictors of Introduction Success in the South Florida Avifauna

Biological invasions are an increasing global challenge, for which single-species studies and analyses focused on testing single hypotheses of causation in isolation are unlikely to provide much additional insight. Species interact with other species to create communities, which derive from species interactions and from the interactions of species with the scale specific elements of the landscape that provide suitable habitat and exploitable resources. I used logistic regression analysis to sort among potential intrinsic, community and landscape variables that theoretically influence introduction success. I utilized the avian fauna of the Everglades of South Florida, and the variables body mass, distance to nearest neighbor (in terms of body mass), year of introduction, presence of congeners, guild membership, continent of origin, distribution in a body mass aggregation or gap, and distance to body-mass aggregation edge (in terms of body mass). Two variables were significant predictors of introduction success. Introduced avian species whose body mass placed them nearer to a body-mass aggregation edge and further from their neighbor were more likely to become successfully established. This suggests that community interactions, and community level phenomena, may be better understood by explicitly incorporating scale.     

Genetic population structure of the net-winged midge, Elporia barnardi (Diptera: Blephariceridae) in streams of the south-western Cape, South Africa: implications for dispersal

SUMMARY 1. The net‐winged midges (Diptera: Blephariceridae), with highly specific habitat requirements and specialised morphological adaptations, exhibit high habitat fidelity and a limited potential for dispersal. Given the longitudinal and hierarchical nature of lotic systems, along with the geological structure of catchment units, we hypothesise that populations of net‐winged midge should exhibit a high degree of population sub‐structuring. 2. Sequence variation in the cytochrome c oxidase subunit I (COI) region of the mitochondrial DNA (mtDNA) was examined to determine patterns of genetic variation and infer historical and contemporary processes important in the genetic structuring of populations of Elporia barnardi. The DNA variation was examined at sites within streams, between streams in the same range, and between mountain ranges in the south‐western Cape of South Africa. 3. Twenty‐five haplotypes, 641 bp in length, were identified from the 93 individuals sampled. A neighbour‐joining tree revealed two highly divergent clades (～5%) corresponding to populations from the two mountain ranges. A number of monophyletic groups were identified within each clade, associated with individual catchment units. 4. The distribution of genetic variation was examined using analysis of molecular variance (amova ). This showed most of the variation to be distributed among the two ranges (～80%), with a small percentage (～15%) distributed among streams within each range. Similarly, variation among streams on Table Mountain was primarily distributed among catchment units (86%). A Mantel's test revealed a significant relationship between genetic differentiation and geographical distance, suggesting isolation by distance (P < 0.001). 5. Levels of sequence divergence between the two major clades, representing the two mountain ranges, are comparable with those of some intra‐generic species comparisons. Vicariant events, such as the isolation of the Peninsula mountain chain and Table Mountain, may have been important in the evolution of what is now a highly endemic fauna. 6. The monophyletic nature of the catchment units suggests that dispersal is confined to the stream environment and that mountain ridges provide effective physical barriers to dispersal of E. barnardi.     

Effects of crayfish size,orientation, and movement on the reactive distance of largemouth bass foraging in clear and turbid water

Laboratory experiments were performed in clear and turbid water to determine the effects of prey size, orientation, and movement on the reactive distance of largemouth bass (Micropterus salmoides) when feeding on crayfish (Procambarus acutus). In clear water, the reactive distance increased linearly with an increase in prey size, and prey movement resulted in a significant increase in the reactive distance. Prey orientation (head-on versus perpendicular) did not change the reactive distances. In moderately turbid water, the reactive distance did not increase with increased prey size, and prey movement did not result in any changes in the reactive distance. The absence of any effects of prey orientation in clear water or prey movement in turbid water is inconsistent with results from studies using different species (primarily planktivorous fish). I propose that largemouth bass change their foraging tactics as prey visibility changes. When prey are highly visible (low turbidity), predators attack (react) only after prey recognition, which is based on multiple cues such as prey size (length, width) and movement. When prey are less visible (high turbidity), predators attack immediately upon initial prey sighting, which does not depend on prey size or movement.     

Use of habitat by the black rat (Rattus rattus) at North Head,New South Wales: an observational and experimental study

This study investigated the habitats used by an introduced species of rodent, the black rat Rattus rattus (Linnaeus), at North Head in New South Wales, Australia. At a coarse scale, combined live‐trapping and radio‐tracking indicated that animals used forest proportionately more than open, heath or scrub macrohabitats that were available. To identify the components contributing to this pattern, microhabitat use was assessed by scoring vegetative and structural features around trap stations, and by using spool‐and‐line tracking. The results indicated that rats preferred microhabitats providing a deep cover of leaf litter and dense understorey with numerous vertical stems. As statistical analysis did not distinguish which of these components was more important in determining habitat use, we designed an experiment to test the importance of a single component: leaf litter. Cover of litter was enhanced experimentally at 75 trap stations and reduced at 75 others, and the response of rats monitored by live‐trapping on two occasions. Although no clear response was found in the first run of the experiment, due to low numbers, rats strongly selected trap stations with enhanced leaf litter in the second run. These results indicate that litter cover affects use of habitat by the black rat. Access to food resources and avoidance of predators may contribute to the observed local patterns of abundance.     

Establishment of a mitochondrial DNA sequence database for the identification of fish species commercially available in South Africa

The limitations intrinsic to morphology-based identification systems have created an urgent need for reliable genetic methods that enable the unequivocal recognition of fish species, particularly those that are prone to overexploitation and/or market substitution. The aim of this study was to develop a comprehensive reference library of DNA sequence data to allow the explicit identification of 53 commercially available fish species in South Africa, most of which were locally caught marine species. Sequences of approximately 655 base pairs were generated for all species from the cytochrome c oxidase I (COI) gene, the region widely adopted for DNA barcoding. Specimens of the genus Thunnus were examined in further detail, employing additional mitochondrial DNA control region sequencing. Cumulative analysis of the sequences from the COI region revealed mean conspecific, congeneric and confamilial Kimura 2-parameter distances of 0.10%, 4.58% and 15.43%, respectively. The results showed that the vast majority (98%) of fish species examined could be readily differentiated by their COI barcodes, but that supplementary control region sequencing was more useful for the discrimination of three Thunnus species. Additionally, the analysis of COI data raised the prospect that Thyrsites atun (snoek) could constitute a species pair. The present study has established the necessary genetic information to permit the unambiguous identification of 53 commonly marketed fish species in South Africa, the applications of which hold a plethora of benefits relating to ecology research, fisheries management and control of commercial practices.     

Species-specific impact of introduced largemouth bass Micropterus salmoides in the Groot Marico Freshwater Ecosystem Priority Area,South Africa

Largemouth bass Micropterus salmoides are among the world's 100 worst invaders and negatively affect aquatic biodiversity in many regions worldwide. In South Africa there is a paucity of empirical studies describing their impacts. The impact of M. salmoides on the fish community in the Groot Marico River catchment, an otherwise near-pristine river ecosystem and a freshwater ecosystem priority area, was assessed from surveys conducted in 2012. Fish presence and abundance were enumerated using multiple survey techniques, and their association with key habitat variables and the presence or absence of M. salmoides were assessed. A total of 14 native fish species were recorded, besides introduced M. salmoides, which occupied the majority of the mainstem and several tributaries downstream of barriers to upstream movement. Canonical correspondence analysis showed that only one native species, the Marico barb Barbus motebensis, had a negative spatial association with M. salmoides. Assessment of relative distributions showed this species to be excluded from M. salmoides-invaded river reaches, whereas the other native species were not visibly affected by the invader. This species-specificity of the impact of M. salmoides indicates that their impacts in South African streams may be dependent on predator-naiveté of prey.     

Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species

Molecular genetic analyses show that introduced populations undergoing biological invasions often bring together individuals from genetically disparate native-range source populations, which can elevate genotypic variation if these individuals interbreed. Differential admixture among multiple native-range sources explains mitochondrial haplotypic diversity within and differentiation among invasive populations of the lizard Anolis sagrei. Our examination of microsatellite variation supports the hypothesis that lizards from disparate native-range sources, identified using mtDNA haplotypes, form genetically admixed introduced populations. Furthermore, within-population genotypic diversity increases with the number of sources and among-population genotypic differentiation reflects disparity in their native-range sources. If adaptive genetic variation is similarly restructured, then the ability of invasive species to adapt to new conditions may be enhanced.     

Effects of 17-beta estradiol and 4-nonylphenol on phase II electrophilic detoxification pathways in largemouth bass (Micropterus salmoides) liver

The effects of in vivo exposure to a natural and synthetic estrogen upon three hepatic phase II enzyme pathways involved in cellular protection against reactive intermediates were investigated in the largemouth bass (Micropterus salmoides). The pathways analyzed included glutathione S-transferases (GST), glutathione (GSH) biosynthesis and NAD(P)H-dependent quinone reductase (QR). Following exposure to 17-beta estradiol (E2, a model natural estrogen; 2 mg/kg, i.p.) or 4-nonylphenol (NP, a model synthetic estrogen; 5 mg/kg and 50 mg/kg, i.p.), serum vitellogenin concentrations in male fish were markedly increased. Exposure to E2 did not affect steady-state GST-A mRNA expression, although GST catalytic activity toward 1-chloro 2,4-dinitrobenzene (CDNB) was elevated at 48 h post-injection. In addition, the rates of bass liver GST-4-hydroxy-2-nonenal (GST-4HNE) conjugation were elevated by E2 exposure at all timepoints. In contrast, exposure to NP decreased steady-state GST-A mRNA levels, but did not alter GST catalytic activities. Hepatic GSH levels were not significantly affected by exposure to either compound, although a trend towards increased GSH biosynthesis was observed with both compounds. Although bass liver quinone reductase catalyzed 2,6-dichloroindophenol (DCP) reduction, unlike in rodents, these catalytic activities were not inhibited by dicoumarol. Exposure to 5 mg/kg NP significantly increased hepatic QR activities. Collectively, our data suggest that exposure to E2 or NP alters the ability of largemouth bass to biotransform environmental chemicals through glutathione S-transferase and quinone reductase catalytic pathways.     

Comparison of dietary mercury exposure in two sympatric top predator fishes, largemouth bass and northern pike: a bioenergetics modeling approach

Physical and ecologicalfactors, including lake temperature, fishphysiology, and diet, influence methylmercury(MeHg) exposure in fish. We employedbioenergetics modeling to compare dietary MeHgexposure in sympatric top predators, largemouthbass (Micropterus salmoides) and northernpike (Esox lucius). We comparedsimulations using field data to hypotheticalsimulations with (1) ± 25% change in meandaily lake temperature for juvenile and adultbass and pike; (2) ± 25% change inlong-term growth rate of pike; (3) adult bassdiet shift from generalist predator to strictpiscivore. Bass and pike MeHg exposures weresimilar in baseline simulations and reflectedpatterns in field tissue concentrations. Thisoccurred despite the fact that bass consumedhighly contaminated benthic invertebrates,while pike exclusively consumed lesscontaminated fish prey. Higher temperaturesincreased adult bass and pike MeHg exposures by35% and 27%, respectively. Shifting adultbass diets to 100% fish resulted in a 54%decrease in exposure, while increasing pikegrowth rates resulted in a 24% decrease. Bioenergetics modeling proved useful inunderstanding the influence of temperature,prey-base, and predator growth on differencesin Hg exposure across fish species.     

The effect of largemouth bass Micropterus salmoides on aquatic macro-invertebrate communities in the Wit River,Eastern Cape,South Africa

Fish predation is one of the driving forces of freshwater invertebrate community structures, with alien predators having a pronounced effect. A quantitative assessment of aquatic invertebrates in the Wit River, Sundays River catchment, Eastern Cape, South Africa, was undertaken to assess the impact of the alien fish Micropterus salmoides on their relative abundance and community structure. Communities in the stones-in-current and marginal vegetation biotopes were sampled in the presence and absence of M. salmoides in late summer (February–April) 2008. Results suggest that the presence of M. salmoides does have an impact on indigenous macroinvertebrate fauna and communities. Community structure in the stones-in-current biotopes did not differ significantly between sections of the river with or without fish. However, there was a significant difference in community structure in marginal vegetation between sections of river. In sections with M. salmoides several large or conspicuous taxa (Odonata, Hemiptera and Coleoptera) were significantly reduced (p < 0.05) or even absent, while cryptic/inconspicuous taxa (Trichoptera, Leptoceridae and Mollusca, Physidae) were significantly more abundant (p < 0.05).     

Isolation and characterization of 149 novel microsatellite DNA markers for striped bass,Morone saxatilis,and cross‐species amplification in white bass,Morone chrysops,and their hybrid

To support detailed genetic analysis of striped bass (Morone saxatilis) and white bass (Morone chrysops), we isolated 153 microsatellite loci from repeat‐enriched striped bass DNA libraries. Of these, 147 markers amplified in striped bass (average 4.7 alleles per locus) and 133 in white bass (average 2.2 alleles per locus). One hundred twenty‐two markers amplified in their hybrid. Development of new microsatellite markers will facilitate evaluations of genetic structure in wild populations and will support pedigree analysis and linkage mapping for selective breeding.