Integrating spatially explicit habitat projections into extinction risk assessments: a reassessment of Amazonian avifauna incorporating projected deforestation

Aim We aimed to complete the first systematic assessment of extinction risk based on projected population declines derived from spatially explicit habitat projections for any taxonomic group at a regional scale, to use the outputs to ascertain the efficacy of an existing protected area network in covering species of conservation concern, and identify gaps therein. Location This study focused on Amazonia; an area of exceptional biodiversity, currently experiencing the highest absolute rate of forest loss globally but where the proportion of species assessed as ‘threatened’ on the International Union for the Conservation of Nature (IUCN) Red List in the region is below global averages. Methods For all forest‐dependent Amazonian bird species (814), we revised extinction risk estimates by combining data from a spatially explicit deforestation model with generation length estimates. By overlaying distribution maps for these revised threatened species, we identified crisis areas (areas of projected deforestation supporting the highest numbers of threatened species), refugia (areas projected to retain forest supporting the highest numbers of threatened species) and areas of high irreplaceability: short‐ and long‐term priorities for new protected areas (PAs). Results The number of species qualifying as threatened rose substantially from 24 (3%) to 64–92 (8–11%). Areas of particular concern are the crisis and highly irreplaceable areas within the ‘arc of deforestation’ in the southern Brazilian Amazon states of Rondônia, Mato Grosso and Pará. Main conclusions Through a novel application of the IUCN Red List criteria, we present a spatially accurate rendering of the extinction risks of Amazonian birds. Important areas in the Amazon are not secure. We identify priorities for expansion of the PAs network and key locations where protection should be enforced. We recommend a collaborative approach employing our methods to repeat this process for other taxonomic groups.     

A checklist of Lecythidaceae in the upper Madeira River,Rondônia,Brazil with comments on diversity and conservation

The Lecythidaceae or Brazil Nut family are ubiquitous in non-flooded lowland forests of the Amazon, where they are indicative of well-preserved or little-disturbed habitats. A recent checklist of the Brazilian flora reported 10 genera and 119 species for that country, of which 104 are found in the Amazon region. However, the botanical knowledge in many regions of the country remains far from complete. This study aimed to analyze the diversity of Lecythidaceae in the upper Madeira River region in Rondônia, an area where botanical data is scarce. Lecythidaceae collections deposited in the CEN, INPA and RON herbaria were examined, and four field expeditions in the study area were carried out. For that region, we recorded 37 species of Lecythidaceae belonging to 7 genera: Eschweilera (21 species), Couratari (6), Cariniana (3), Gustavia (3), Allantoma (2), Bertholletia (1) and Lecythis (1). Among these species, five are listed as threatened in the IUCN Red List. The total number of species found in the upper Madeira River of Rondônia alone is higher than the 28 species reported to date for the entire state of Rondônia in the Brazilian Flora Checklist (Smith et al., 2015), and adds 13 new records of Lecythidaceae for the state. Considering that this study is restricted to the northern part of the state, our results suggest that the number of Lecythidaceae species in Rondônia is severely underestimated. Our findings highlight the need for more intensive floristic studies in the Amazon region, which should target areas that are botanically unexplored but have high biodiversity potential. Such studies will provide valuable information to support both taxonomic studies and species conservation assessments.     

Genetic Diversity and Natural Population Structure of Cacao (Theobroma cacao L.) from the Brazilian Amazon Evaluated by Microsatellite Markers

A sample of 94 accessions of Theobroma cacao L. (cacao), representing four populations from the Brazilian Amazon (Acre, Rondônia, lower Amazon and upper Amazon) were analyzed using microsatellite markers to assess the genetic diversity and the natural population structure. From the 19 microsatellite loci tested, 11 amplified scorable products, revealing a total of 49 alleles, including two monomorphic loci. The Brazilian upper Amazon population contained the largest genetic diversity, with the most polymorphic loci, the highest observed heterozygosity; and the majority of rare alleles, thereby this region might be considered part of the center of diversity of the species. The observed heterozygosity for all the Brazilian populations (H _o = 0.347) was comparable with values reported for other similar upper Amazon Forastero cacao populations, with the Acre and Rondônia displaying the lowest values. The lower Amazon population, traditionally defined as highly homozygous, presented an unexpectedly high observed heterozygosity (H _o = 0.372), disclosing rare and distinct alleles, with large identity with the upper Amazon population. It was hypothesized that part of the lower Amazon population might derive from successive natural or intentional introduction of planting material from other provenances, mainly upper Amazon. Most of the loci exhibited a lower observed heterozygosity than expected, suggesting that self-pollination might be more common than usually assumed in cacao, but excess of homozygotes might also derive from sub-grouping (Wahlund effect) or from sampling related individuals. Most of the gene diversity was found to occur within groups, with small differentiation between the four Brazilian Amazon populations, typical of species with high gene flow.     

Soil organic carbon stock change due to land use activity along the agricultural frontier of the southwestern Amazon,Brazil, between 1970 and 2002

The southwestern portion of the Brazilian Amazon arguably represents the largest agricultural frontier in the world, and within this region the states of Rondônia and Mato Grosso have about 24% and 32% of their respective areas under agricultural management, which is almost half of the total area deforested in the Brazilian Amazon biome. Consequently, it is assumed that deforestation in this region has caused substantial loss of soil organic carbon (SOC). In this study, the changes in SOC stocks due to the land use change and management in the southwestern Amazon were estimated for two time periods from 1970–1985 and 1985–2002. An uncertainty analysis was also conducted using a Monte Carlo approach. The results showed that mineral soils converted to agricultural management lost a total of 5.37 and 3.74 Tg C yr^?1 between 1970–1985 and 1985–2002, respectively, along the Brazilian Agricultural Frontier in the states of Mato Grosso and Rondônia. Uncertainties in these estimates were ±37.3% and ±38.6% during the first and second time periods, respectively. The largest sources of uncertainty were associated with reference carbon (C) stocks, expert knowledge surveys about grassland condition, and the management factors for nominal and degraded grasslands. These results showed that land use change and management created a net loss of C from soils, however, the change in SOC stocks decreased substantially from the first to the second time period due to the increase in land under no‐tillage.     

The phylogeography of Amazonia revisited: new evidence from riodinid butterflies

Abstract A fully resolved cladogram for 19 species in the Charis cleonus group of riodinid butterflies, which have closely parapatric ranges throughout the Amazon basin, is used to derive an area cladogram for the region. This represents the first comprehensive species‐level analysis using insects and results in a hypothesis of Amazonian area relationships that is the most detailed to date. The Charis area cladogram is interpreted as supporting an historical vicariant split between the Guianas and the remainder of the Amazon and then between the upper and lower Amazon. The latter two clades can be further divided into the six most widely recognized areas of endemism and even smaller endemic centers within these, some of which, especially along the Madeira and lower Amazon Rivers, have never been previously hypothesized for butterflies. The overall pattern of historical interrelationships indicated is Guiana + ((Rondônia + (Pará+ Belém)) + (Imeri + (Napo + Inambari))). The area relationships for riodinid butterflies show substantial congruence with those presented from the literature for amphibians, reptiles, birds, primates, rodents, and marsupials, suggesting a common vicariant history for these organisms. A summary area cladogram generated by combining area cladograms for all the aforementioned groups of organisms indicated the pattern of historical interrelationships to be (Guiana + (Rondônia + (Pará+ Belém))) + (Imeri + (Napo + Inambari)). Charis cleonus group species distributions are noticeably larger around the upland periphery of Amazonia and smaller in the central and lower regions. A significant positive correlation between the proportion of range area above 100 m and total range size for each species is used to suggest that past sea‐level rises may explain smaller range sizes in low‐lying regions and that riverine barriers have been important in shaping the current distribution of C. cleonus group species.     

Multilocus phylogeography of the Wedge-billed Woodcreeper Glyphorynchus spirurus (Aves,Furnariidae) in lowland Amazonia: Widespread cryptic diversity and paraphyly reveal a complex diversification pattern

Amazonian rivers function as important barriers to dispersal of Amazonian birds. Studying population genetics of lineages separated by rivers may help us to uncover the dynamics of biological diversification in the Amazon. We reconstructed the phylogeography of the Wedge-billed Woodcreeper, Glyphorynchus spirurus (Furnariidae) in the Amazon basin. Sampling included 134 individuals from 63 sites distributed in eight Amazonian areas of endemism separated by major Amazonian rivers. Nucleotide sequences were generated for five genes: two mtDNA genes (1047 bp for cyt b and 1002 bp for ND2) and three nuclear genes (647 bp from the sex-linked gene ACO, 319 bp from the intron of G3PDH, and 619 bp from intron 2 of MYO). In addition, 37 individuals were randomly selected from the Rondônia and Inambari areas of endemism for genomic fingerprinting, using five ISSR primers. Our results reveal allopatric and well-supported lineages within G. spirurus with high levels of genetic differentiation (p-distances 0.9–6.3%) across opposite banks of major Amazonian rivers. The multilocus phylogenetic reconstructions obtained reveal several incongruences with current subspecies taxonomy. Within currently recognized subspecies, we found high levels of both paraphyly and genetic differentiation, indicating deep divergences and strong isolation consistent with species-level differences. ISSR fingerprinting supports the existence of genetically differentiated populations on opposite sides of the Madeira River. Molecular dating suggests an initial vicariation event isolating populations from the Guiana center of endemism during the Late Miocene/Early Pliocene, while more recent events subdivided Brazilian Shield populations during the Lower Pleistocene.     

Incorporating phylogenetic information for the definition of floristic districts in hyperdiverse Amazon forests: Implications for conservation

Using complementary metrics to evaluate phylogenetic diversity can facilitate the delimitation of floristic units and conservation priority areas. In this study, we describe the spatial patterns of phylogenetic alpha and beta diversity, phylogenetic endemism, and evolutionary distinctiveness of the hyperdiverse Ecuador Amazon forests and define priority areas for conservation. We established a network of 62 one‐hectare plots in terra firme forests of Ecuadorian Amazon. In these plots, we tagged, collected, and identified every single adult tree with dbh ≥10 cm. These data were combined with a regional community phylogenetic tree to calculate different phylogenetic diversity (PD) metrics in order to create spatial models. We used Loess regression to estimate the spatial variation of taxonomic and phylogenetic beta diversity as well as phylogenetic endemism and evolutionary distinctiveness. We found evidence for the definition of three floristic districts in the Ecuadorian Amazon, supported by both taxonomic and phylogenetic diversity data. Areas with high levels of phylogenetic endemism and evolutionary distinctiveness in Ecuadorian Amazon forests are unprotected. Furthermore, these areas are severely threatened by proposed plans of oil and mining extraction at large scales and should be prioritized in conservation planning for this region.     

Using indirect methods to constrain symbiotic nitrogen fixation rates: a case study from an Amazonian rain forest

Human activities have profoundly altered the global nitrogen (N) cycle. Increases in anthropogenic N have had multiple effects on the atmosphere, on terrestrial, freshwater and marine ecosystems, and even on human health. Unfortunately, methodological limitations challenge our ability to directly measure natural N inputs via biological N fixation (BNF)—the largest natural source of new N to ecosystems. This confounds efforts to quantify the extent of anthropogenic perturbation to the N cycle. To address this gap, we used a pair of indirect methods—analytical modeling and N balance—to generate independent estimates of BNF in a presumed hotspot of N fixation, a tropical rain forest site in central Rondônia in the Brazilian Amazon Basin. Our objectives were to attempt to constrain symbiotic N fixation rates in this site using indirect methods, and to assess strengths and weaknesses of this approach by looking for areas of convergence and disagreement between the estimates. This approach yielded two remarkably similar estimates of N fixation. However, when compared to a previously published bottom-up estimate, our analysis indicated much lower N inputs via symbiotic BNF in the Rondônia site than has been suggested for the tropics as a whole. This discrepancy may reflect errors associated with extrapolating bottom-up fluxes from plot-scale measures, those resulting from the indirect analyses, and/or the relatively low abundance of legumes at the Rondônia site. While indirect methods have some limitations, we suggest that until the technological challenges of directly measuring N fixation are overcome, integrated approaches that employ a combination of model-generated and empirically-derived data offer a promising way of constraining N inputs via BNF in natural ecosystems.     

A study of Culicoides in Rondônia,in the Brazilian Amazon: species composition,relative abundance and potential vectors

There is very little information available about Culicoides species (Diptera: Ceratopogonidae) in the western Brazilian Amazon. However, studies of the fauna of this region are essential to knowledge of the species and potential vectors within it. Thus, the present study aims to evaluate the abundance, richness and composition of Culicoides species in rural areas in the state of Rondônia, Brazil. Culicoides specimens were collected in forest and pasture environments in the municipality of Porto Velho, using light traps. A total of 1708 individuals (1136 females and 572 males) belonging to 33 species were collected; 28 of these samples represent new records for the state of Rondônia and include the first record of Culicoides contubernalis in Brazil. Culicoides insignis was the most abundant species (86.1%). Species richness was greater in forest areas (32 species, 96.96%), whereas pastures presented the greatest number of Culicoides captured (n = 1540, 90.1%). This study shows that Culicoides populations differ between forest and pasture environments and indicates that the abundance of C. insignis is an important factor in epidemiological vigilance studies in the region.     

New and interesting species of Hymenochaetaceae from the Brazilian Amazonia

Coltricia globispora sp. nov. is described as new based on specimens collected in the Parque Natural Municipal de Porto Velho, in the state of Rondônia, Brazilian Amazonia. It is characterized by small pores (7–8 per mm), monomitic hyphal system, and globose, smooth and guttulate basidiospores (5.5–6.6 (?7) μm). Phellinus griseoporus has been found for the first time in Brazil, and Cyclomyces iodinus, P. merrillii, P. membranaceus and P. umbrinellus in the Brazilian Amazonia. Coltricia cinnamomea, P. calcitratus and Phylloporia chrysites are new occurrences to the state Rondônia, while C. hamata and Phylloporia spathulata to the state of Pará. The knowledge about Hymenochaetaceae in the Brazilian Amazonia is briefly discussed, and a key to the neotropical species of Coltricia is provided.     

Titi monkeys (Callicebus spp., Atelidae: Platyrrhini) in the Brazilian state of Rondônia

Five species of titi monkey (Callicebus brunneus, Callicebus caligatus Callicebus cinerascens, Callicebus donacophilus, andCallicebus moloch) were recorded in surveys of primate populations at 26 sites throughout the Brazilian state of Rondônia. The distribution of the two species,C. cinerascens andC. donacophilus (recorded in the state for the first time), appeared to be related to that of non-forest ecosystems, the former in thecerrado woodlands, and the latter in gallery forests of the Guaporé grasslands. The results of the surveys also indicate thatC. brunneus has a more restricted distribution in southern Rondônia than was previously thought, whereasC. moloch is more widespread. However, the ecological factors that determine species distribution in the south of the state remain unclear on the basis of the available data. All species were observed in small social groups of no more than five individuals, which are typical of the genus, generally in the middle and lower forest strate.     

Tree Species Distribution along Environmental Gradients in an Area Affected by a Hydroelectric Dam in Southern Amazonia

We describe the patterns of composition and abundance of tree species and their relationships to environmental factors in an area affected by the Jirau hydroelectric dam on the Madeira River in the Brazilian state of Rondônia. Trees were sampled in 20 1‐ha forest plots distributed among areas affected and unaffected by the hydroelectric reservoir. Predictors of species distribution included in the analyses were soil fertility (sum of bases) and texture, slope, and the vertical distance from the nearest drainage. We sampled 8504 individuals belonging to 909 species/morphospecies. Floristic differences occurred throughout the reservoir area and between the sides of the river, and were strongly associated with edaphic and geological factors. The predictor with the greatest effect on the floristic changes was the sum of bases, coupled with the vertical distance from the nearest drainage, the latter reflecting the influence of the riparian zone. The forests sampled were heterogeneous and included transitional formations between unflooded terra firme and seasonally inundated (varzea, campinarana) forests. Although a considerable number of species (253) were restricted to plots affected by the reservoir, most of these species have a widespread distribution in the Amazon region. However, conservation measures are required in order to preserve species associations and ecosystems processes similar to those most affected by the reservoir such as the river floodplains. Our study reinforces the need to consider the heterogeneity of habitats affected by reservoirs when making decisions concerning the building of hydroelectric dams in the Amazon.     

Combined exposure to hydroelectric expansion,climate change and forest loss jeopardies amphibians in the Brazilian Amazon

Aim

Human‐driven impacts constantly threat amphibians, even in largely protected regions such as the Amazon. The Brazilian Amazon is home to a great diversity of amphibians, several of them currently threatened with extinction. We investigated how climate change, deforestation and establishment of hydroelectric dams could affect the geographic distribution of Amazonian amphibians by 2030 and midcentury.

Location

The Brazilian Amazon.

Methods

We overlapped the geographic distribution of 255 species with the location of hydroelectric dams, models of deforestation and climate change scenarios for the future.

Results

We found that nearly 67% of all species and 54% of species with high degree of endemism within the Legal Brazilian Amazon would lose habitats due to the hydroelectric overlapping. In addition, deforestation is also a potential threat to amphibians, but had a smaller impact compared to the likely changes in climate. The largest potential range loss would be caused by the likely increase in temperature. We found that five amphibian families would have at least half of the species with over 50% of potential distribution range within the Legal Brazilian Amazon limits threatened by climate change between 2030 and 2050.

Main conclusions

Amphibians in the Amazon are highly vulnerable to climate change, which may cause, directly or indirectly, deleterious biological changes for the group. Under modelled scenarios, the Brazilian Government needs to plan for the development of the Amazon prioritizing landscape changes of low environmental impact and economic development to ensure that such changes do not cause major impacts on amphibian species while reducing the emission of greenhouse gases.

     

Habitat use of the ocelot (Leopardus pardalis) in Brazilian Amazon

Amazonia forest plays a major role in providing ecosystem services for human and sanctuaries for wildlife. However, ongoing deforestation and habitat fragmentation in the Brazilian Amazon has threatened both. The ocelot is an ecologically important mesopredator and a potential conservation ambassador species, yet there are no previous studies on its habitat preference and spatial patterns in this biome. From 2010 to 2017, twelve sites were surveyed, totaling 899 camera trap stations, the largest known dataset for this species. Using occupancy modeling incorporating spatial autocorrelation, we assessed habitat use for ocelot populations across the Brazilian Amazon. Our results revealed a positive sigmoidal correlation between remote‐sensing derived metrics of forest cover, disjunct core area density, elevation, distance to roads, distance to settlements and habitat use, and that habitat use by ocelots was negatively associated with slope and distance to river/lake. These findings shed light on the regional scale habitat use of ocelots and indicate important species–habitat relationships, thus providing valuable information for conservation management and land‐use planning.     

Arbovirus detection in synanthropic mosquitoes from the Brazilian Amazon and in mosquito saliva using Flinders Technology Associates cards

Although arbovirus transmission and identifying target vectors may provide a baseline for planning disease control strategies, there are many gaps in knowledge regarding these mosquitoes and viral species in urban, rural, or sylvatic habitats in the Brazilian Amazon. Our goal was to screen for dengue, chikungunya, and Zika viruses in synanthropic mosquitoes and with Flinders Technology Associates (FTA) cards using insect saliva. Mosquitoes were caught using ovitraps and aspirators in the city of Porto Velho, Rondônia, Brazil. Honey-baited FTA cards were placed in mosquito cages for 15 days; whole mosquitoes and FTA cards were analysed for viral RNA using RT-qPCR assays. One pool of Aedes aegypti females was found to be infected with the Zika virus and one male mosquito was infected with dengue-4, suggesting natural vertical/venereal transmission. Our study also reported evidence of vertical/venereal transmission of ZIKV in Culex quinquefasciatus males for the first time in the Brazilian Amazon, and the feasibility of using FTA cards to detect arboviruses in the saliva of field-collected mosquitoes. Vertical/venereal transmission of viruses by atypical mosquito species reinforces the need for combined viral and entomological screening in arbovirus surveillance programs.     

Agricultural intensification increases deforestation fire activity in Amazonia

Fire-driven deforestation is the major source of carbon emissions from Amazonia. Recent expansion of mechanized agriculture in forested regions of Amazonia has increased the average size of deforested areas, but related changes in fire dynamics remain poorly characterized. We estimated the contribution of fires from the deforestation process to total fire activity based on the local frequency of active fire detections from the Moderate Resolution Imaging Spectroradiometer (MODIS) sensors. High-confidence fire detections at the same ground location on 2 or more days per year are most common in areas of active deforestation, where trunks, branches, and stumps can be piled and burned many times before woody fuels are depleted. Across Amazonia, high-frequency fires typical of deforestation accounted for more than 40% of the MODIS fire detections during 2003–2007. Active deforestation frontiers in Bolivia and the Brazilian states of Mato Grosso, Pará, and Rondônia contributed 84% of these high-frequency fires during this period. Among deforested areas, the frequency and timing of fire activity vary according to postclearing land use. Fire usage for expansion of mechanized crop production in Mato Grosso is more intense and more evenly distributed throughout the dry season than forest clearing for cattle ranching (4.6 vs. 1.7 fire days per deforested area, respectively), even for clearings >200 ha in size. Fires for deforestation may continue for several years, increasing the combustion completeness of cropland deforestation to nearly 100% and pasture deforestation to 50–90% over 1–3-year timescales typical of forest conversion. Our results demonstrate that there is no uniform relation between satellite-based fire detections and carbon emissions. Improved understanding of deforestation carbon losses in Amazonia will require models that capture interannual variation in the deforested area that contributes to fire activity and variable combustion completeness of individual clearings as a function of fire frequency or other evidence of postclearing land use.     

Campylocentrum benellii and C. paludosum spp. nov. (Angraecinae–Orchidaceae): two new leafless species from Brazil

The leafless condition is present in two neotropical epiphyte genera of Orchidaceae, Campylocentrum and Dendrophylax. Only the first one is reported from Brazil, where seven leafless species are recorded, and four of them are endemic. This study describes two new species of Campylocentrum from the Atlantic forest of São Paulo state and Amazon forest of Acre, Mato Grosso and Rondônia states. It also provides a key to the Brazilian species of leafless Campylocentrum, illustrations, and a discussion of the affinities of the new species with allied ones.     

Dynamics of Aboveground and Soil Carbon and Nitrogen Stocks and Cycling of Available Nitrogen along a Land-use Gradient in Rondônia,Brazil

High rates of deforestation in the Brazilian Amazon have the potential to alter the storage and cycling of carbon (C) and nitrogen (N) across this region. To investigate the impacts of deforestation, we quantified total aboveground biomass (TAGB), aboveground and soil pools of C and N, and soil N availability along a land-use gradient in Rondônia, Brazil, that included standing primary forest, slashed primary and secondary forest, shifting cultivation, and pasture sites. TAGB decreased substantially with increasing land use, ranging from 311 and 399 Mg ha^–1 (primary forests) to 63 Mg ha^–1 (pasture). Aboveground C and N pools declined in patterns and magnitudes similar to those of TAGB. Unlike aboveground pools, soil C and N concentrations and pools did not show consistent declines in response to land use. Instead, C and N concentrations were strongly related to percent clay content of soils. Concentrations of NO₃-N and NH₄-N generally increased in soils following slash-and-burn events along the land-use gradient and decreased with increasing land use. Increasing land use resulted in marked declines in NO₃-N pools relative to NH₄-N pools. Rates of net nitrification and N-mineralization were also generally higher in postfire treatments relative to prefire treatments along the land-use gradient and declined with increasing land use. Results demonstrate the linked responses of aboveground C and N pools and soil N availability to land use in the Brazilian Amazon; steady reductions in aboveground pools along the land-use gradient were accompanied by declines in inorganic soil N pools and transformation rates.     

Multiple facets of biodiversity are threatened by mining-induced land-use change in the Brazilian Amazon

Aim

Mining is increasingly pressuring areas of critical importance for biodiversity conservation, such as the Brazilian Amazon. Biodiversity data are limited in the tropics, restricting the scope for risks to be appropriately estimated before mineral licensing decisions are made. As the distributions and range sizes of other taxa differ markedly from those of vertebrates—the common proxy for analysis of risk to biodiversity from mining—whether mining threatens lesser-studied taxonomic groups differentially at a regional scale is unclear.

Location

Brazilian Amazon.

Methods

We assess risks to several facets of biodiversity from industrial mining by comparing mining areas (within 70 km of an active mining lease) and areas unaffected by mining, employing species richness, species endemism, phylogenetic diversity and phylogenetic endemism metrics calculated for angiosperms, arthropods and vertebrates.

Results

Mining areas contained higher densities of species occurrence records than the unaffected landscape, and we accounted for this sampling bias in our analyses. None of the four biodiversity metrics differed between mining and nonmining areas for vertebrates. For arthropods, species endemism was greater in mined areas. Mined areas also had greater angiosperm species richness, phylogenetic diversity and phylogenetic endemism, although less species endemism than unmined areas.

Main Conclusions

Unlike for vertebrates, facets of angiosperm and arthropod diversity are relatively higher in areas of mining activity, underscoring the need to consider multiple taxonomic groups and biodiversity facets when assessing risk and evaluating management options for mining threats. Particularly concerning is the proximity of mining to areas supporting deep evolutionary history, which may be impossible to recover or replace. As pressures to expand mining in the Amazon grow, impact assessments with broader taxonomic reach and metric focus will be vital to conserving biodiversity in mining regions.     

Terena Amerindian group autosomal STR data: comparison studies with other Brazilian populations

Allele frequencies for the high polymorphic short tandem repeats (STR) loci PentaE, PentaD, D18S51, D21S11, TH01, D3S1358, FGA, D16S539, D7820, D13S317, vWA and D81179 were analysed in an native Amerindian population from Mato Grosso do Sul state named Terena. Deviations from Hardy–Weinberg expectations were evaluated and the results showed no differences from equilibrium in all loci. The combined power of discrimination and the combined power of exclusion for the 12 tested STR loci were 0.99999999 and 0.999999 respectively. The Terena population data were compared to other from 11 Brazilian populations (Amazônia, Pernambuco, Mato Grosso do Sul, São Paulo, Rio Grande do Sul, Alagoas, Sergipe, Rio Grande do Norte, Santa Catarina, Rondônia and Rio de Janeiro) representing the major Brazilian geographic regions. The F_ST comparative analysis showed no significant differences between all those populations except when comparing Terena with the remained ones.