Algal Assemblages in Multiple Habitats of Restored and Extant Wetlands

The functional and structural attributes of algal assemblages were studied in 25 restored and 20 extant depressional wetlands in southern central Michigan. Environmental conditions and algal assemblages were compared between restored and extant wetlands and among habitats within wetlands. Restored marshes generally had lower shading by macrophytes, nutrient concentrations, and sediment organic matter. Relative biovolume of non-diatom algae was significantly different among plankton, macrophyte and sediment habitats in restored wetlands, but did not differ between macrophytes and sediments in extant wetlands. Species composition of diatom assemblages was not significantly different between plants and sediments in both restored and extant wetlands. The observed differences in non-diatom algae could not be attributed to any measured environmental variable; however, diatom assemblage differences between habitats increased with light irradiance. Differences in sediment diatom assemblages were observed between restored and extant wetlands and were related to differences in nutrients, pH, and canopy cover. Differences were also observed between epiphytic diatom assemblages in restored and extant wetlands and they were related to light and dissolved oxygen. In summary, differences in light and nutrient availability were the main environmental factors differentiating algal communities in wetlands.     

Studies on Atmosphere Spores and Pollen and Their Influences on the Sporopollen Assemblages in the Sediments of Huanghai Sea

Totally, 321 grains of spores and pollens which consist of 23 genera and species, were collected from the atmosphere over Huanghai Sea during the survey in 1978–1979. It has been found that the amount of spores and pollen in the atmosphere was high in spring, lower in autumn and the lowest in summer and winter. The content of arboreal pollens amount to 74%, with 23% of herbaceous pollens and SM of spores. By comparing the spores and pollens in the atmosphere with those in the marine sedments it was revealed that they were well correlated but the former influences distinctly to the distribution of the latter, thus making a high content of herbaceous pollens in the sporopollen distributions in the marine sediments nearshore area and high content of arboreal pollens in area far from the coast.     

Spatial Distribution of Algal Assemblages in a Temperate Lowland Peat Bog

Samples of phytobenthos were collected during three different seasons in 2005 along a linear transect of a lowland peat bog at various spatial scales (10 cm, 1 m, 10 m) to investigate the seasonal dynamics, diversity, and factors influencing the spatial patterns of microalgal communities. Non‐metric multidimensional scaling (NMDS), similarity percentage (SIMPER) analyses, ANOSIM, Mantel tests and diversity indices were used to analyze the data. Seasonal dynamics were exhibited by an increase in diversity, and a decrease in dominance from May to October, with significant differences in species composition. Mantel tests showed the significant influence of distance, microhabitat type, and conductivity on maintaining the similarity of species composition on scales of 1 m and 10 m. The small‐scale processes (colonization and niche differentiation), microhabitat type, geographic distance and conductivity were found to be the main factors influencing the distribution of algal assemblages. We conclude that these factors are related to winter disturbance, and the consequent colonization and subsequent niche differentiation. (© 2009 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

The Changes in the Composition of the Diatom Assemblages Found in the Surface Sediments of Blelham Tarn in the English Lake District During 1973

A study has been made of the accumulation of diatom frustulesin the surface layers of lake sediments, taking advantage ofthe appearance of a new diatom bloom in Blelham Tarn in theEnglish Lake District. Results from monitoring the top 5 cmof sediment and seston trap material, and comparison with phytoplanktonrecords show that there is good agreement between all threeand that sediment diatom assemblages change in response to theliving populations so that the record of large ‘blooms’can be quickly diluted. The centric diatom, Stephanodiscus astraeavar. minutula appeared to sink out of the phytoplankton quicklyand mix down into older sediments fairly readily, circumstanceswhich may be assisted by the compact shape of its frustule.     

Fingerprinting Microbial Assemblages from the Oxic/Anoxic Chemocline of the Black Sea

Biomass samples from the Black Sea collected in 1988 were analyzed for SSU genes from Bacteria and Archaea after 10 years of storage at −80°C. Both clonal libraries and direct fingerprinting by terminal restriction fragment length polymorphism (T-RFLP) analyses were used to assess the microbial community. Uniform and discrete depth distributions of different SSU phylotypes were observed. However, most recombinant clones were not restricted to a specific depth in the water column, and many of the major T-RFLP peaks remain uncharacterized. Of the clones obtained, an -Proteobacteria and a Pseudoalteromonas-like clone accounted for major peaks in the fingerprint, while deeply branching lineages of α- and γ-Proteobacteria were associated with smaller peaks. Additionally, members were found among both the δ-Proteobacteria related to sulfate reducers and the Archaea related to phylotypes from the ANME groups that anaerobically oxidize methane.     

Oligochaete Assemblages in the Hyporheic Zone and Coarse Surface Sediments: Their Importance for Understanding of Ecological Functioning of Watercourses

The hyporheic zone and its interactions with coarse surface sediments is increasingly reported by aquatic ecologists because the water exchanges between surface and subsurface are important factors for the understanding of the ecosystem functioning. However, the hyproheic oligochaete assemblages have received less attention than other assemblages such as crustaceans. In addition, studies investigating the incidence of pollution in watercourses have mostly focused on the benthic zone and have neglected the hyporheic zone. Some examples are given from an unpolluted glacial river (Roseg), polluted plains rivers (Moselle, Rhône) and a protected wetland in an urbanized environment. The hyporheic zone kept the memory of past and present incidences of pollution, in particular when downwellings of polluted surface waters to the hyporheic zone predominated. The Active hydrologic Exchange Describers between surface and subsurface (AED oligochaete species) were the same in the glacial river Roseg, the rivers Rhône and Moselle and the urbanized wetland. The predominance of pollution-tolerant species like Limnodrilus hoffmeisteri was observed in polluted groundwater as well as in polluted surface coarse sediments. Moreover, the urbanized wetland exhibited a high species richness, suggesting that the hyporheic zone is a reservoir of species. The oligochaete communities enable biologists to simultaneously assess the pollution incidence, the permeability of coarse habitats, the water exchanges between surface and subsurface, and give an approximate measure of the metabolic activities in the sediments. Consequently, the simultaneous study of surface and hyporheic oligochaete assemblages is of great interest when considering the ecological functioning of watercourses and the incidence of pollution inputs.     

Algal production in the west-central North Sea

In 1976, 13 cruises were used for a plankton survey of an areaapproximately 300 x 150 km off the north-east coast of Englandfrom March to November. Results are presented of integratedzooplankton samples, surface measured nitrate, phosphate, silicateand chlorophyll, as well as other environmental characteristics.They show that the spring bloom started from near the DoggerBank and spread to most of the area by the end of April; thisdeclined and a nearshore production zone was seen in summer.This eventually disappeared and an offshore autumnal peak wasfound. The data are interpreted with use of a vertically integratedtwo-dimensional model. The model adequately explains the amplitudeand timing of the two-dimensional distributions of algal standingstock for the first half of the year but provides a poor representationafter that. It is inferred that annual primary production inthis region is low, about 40 g C.m^–2. This is due to lowoverwinter levels of nutrients and a shallow mixed layer depthof water. Pelagic fish are considered to have an ecologicalefficiency of 7–10% and demersal fish of about 4%. Thelatter figure may be due to underexploitation of demersal biomass.     

The Biodiversity and Antimicrobial Activity of Bacteria Isolated from the Bottom Sediments of the Chukchi Sea

Russian Journal of Marine Biology - Two hundred and forty eight strains of heterotrophic microorganisms were isolated from bottom sediments of the Chukchi Sea. A 16S rRNA gene sequence analysis was...     

Composition and Distribution of Recent Marine Ostracod Assemblages in the Bottom Sediments of Central Aegean Sea (SE Andros Island,Greece)

The present study provides a thorough analysis of the composition of recent marine ostracod populations from the bottom sediments of the central Aegean Sea, as well as their distribution patterns. In particular, a detailed qualitative and quantitative study of living ostracod assemblages was carried out in the marine environments of SE Andros Island. Sampling took place at Kastro and Korthi Gulf, both located at the southeastern coast of the Andros Island and from depth of 1.5 to 18 m, while additional samples were collected outside the gulfs at a depth of 120–180 m. Only ostracods considered to have been living at the time of collection were picked from the samples. A total of 51 species belonging to 34 genera were identified and four main ostracod assemblages, representing different biotopes, were distinguished. The results produced from the application of Q‐mode cluster analysis in the data set, the calculated assemblage structure indices for each sample, as well as the bathymetric and granulometric data are as follows: Hiltermannicythere rubra assemblage (occurs in substrates of sandy mud and at a water depth ranging from 40–60 m to the depth of 100 m or even more), Loxoconcha affinis, Xestoleberis sexmaculata assemblage (occurs in substrates of muddy very fine to fine sands and shallower environments), Semicytherura incogruens assemblage (occurs in very fine sands at a water depth from 10 to 28 m), Loculicytheretta pavonia and Neocytherideis fasciata, Pontocythere turbita assemblages (occurs mainly in fine sands and at a water depth between 3.5 and 15 m) and Urocythereis neapolitana assemblage (occurs in substrates of medium to coarse sand and at a water depth of less than 20 m). (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Numerical Characteristics of Pollen Assemblages of Surface Samples from the West Kunlun Mountains

A total of 31 suface sediment samples were collected from West Kunlun Mountain in south Xinjiang Autonomous Region in northwest China. These samples are from seven types of vegetation: Picea schrenkiana Fisch. et Mey. forest, Sabina Spach. woodland, sub-alpine steppe, alpine meadow, desert vegetion, cushion-vegetation and vegetation adjancent to glaciers. Pollen percentages and pollen concentrations were calculated in all samples. The dominant pollen types in the region are Chenopodiaceae, Artemisia, Picea, Ephedra, Gramineae, Cyperaceae, Rosaceae, Leguminosae, Compositae etc. In order to reveal the relationship between pollen composition and the vegetation type from which the soil sample was collected, principal component analysis and group average cluster analysis were employed on the pollen data. The results revealed that the major vegetation types in this region could be distinguished by pollen composition: a. Samples from desert vegetation were dominated by pollen of Chenopodiaceae (about 60195%). The percentages of all other pollen types were low. b. Picea forest samples were rich in Picea pollen (about 20%) Sabina forest had more Sabina pollen grains than other vegetation types (about 5%, others <1%). Pollen percentages of Artemisia, Chenopodiaceae and Ephedra were comparatively higher (each about 20%) in these samples from the two types of vegetations. C. Pollen percentages of Artemisia, Cyperaceae, Gramineae and Chenopodiaceae were high in both sub-alpine steppe and alpine meadow. But steppe containal more Artemisia and Chenopodiaceae (steppe 33.75% and 32.30%, meadow 15.57% and 19.48% in average), less Cyperaceae and Gramineae (steppe 2.58% and 7.60%, meadow 22.35% and 12.93% in average) than meadow. d. Samples from cushion-vegetation and vegetation adjacent to glaciers were mainly composed of pollen grains transported from other sites. It was not easy to distinguish them from other vegetation types. Principal component analysis and cluster analysis distinguish samples from Picea forest, Sabina woodland, sub-alpine steppe, alpine meadow and desert vegetation. Therefore we think it will be possible to apply the module to reconstruct past vegetation in this region and other similar regions. Regression analysis was also applied to reveal the relationships between pollen and plant percentages of Artemisia, Chenopodiaceae, Cyperaceae and Gramineae. The results indicated that a linear relationship existed between pollen and plant percentages for Artemisia, Chenopodiaceae and Cyperaeeae.     

Ecological Risk Assessment of Arsenic and Metals in Surface Sediments from Estuarine and Coastal Areas of the Southern Bohai Sea,China

Distribution and magnitude of arsenic and metals in surface sediments collected from the coastal and estuarine areas of the southern Bohai Sea, China, were investigated. Sediments from the estuarine and coastal areas of the Jie and Xiaoqing Rivers contained highest concentrations of arsenic, cadmium, copper, mercury, and zinc. Mean concentrations of Cu, Zn, Cr, Pb, and Cd were higher than background concentrations determined for the areas. The magnitude of both enrichment factors (EF) and geoaccumulation indices (I_geo) suggested that pollution with As and metals was occurring along estuarine and coastal areas of the southern Bohai Sea. Risk analysis also suggested that concentrations of As and metals were sufficiently elevated as to cause adverse biological effects in the study area. According to the ecological risk index (RI) values, the upstream of the Jie River has a very high ecological risk for the waterbody. The data provided in this study are considered crucial for controlling and remediation of As and metals’ pollution of the southern Bohai Sea.     

Large-Scale Distribution and Activity of Prokaryotes in Deep-Sea Surface Sediments of the Mediterranean Sea and the Adjacent Atlantic Ocean

The deep-sea represents a substantial portion of the biosphere and has a major influence on carbon cycling and global biogeochemistry. Benthic deep-sea prokaryotes have crucial roles in this ecosystem, with their recycling of organic matter from the photic zone. Despite this, little is known about the large-scale distribution of prokaryotes in the surface deep-sea sediments. To assess the influence of environmental and trophic variables on the large-scale distribution of prokaryotes, we investigated the prokaryotic assemblage composition (Bacteria to Archaea and Euryarchaeota to Crenarchaeota ratio) and activity in the surface deep-sea sediments of the Mediterranean Sea and the adjacent North Atlantic Ocean. Prokaryotic abundance and biomass did not vary significantly across the Mediterranean Sea; however, there were depth-related trends in all areas. The abundance of prokaryotes was positively correlated with the sedimentary concentration of protein, an indicator of the quality and bioavailability of organic matter. Moving eastwards, the Bacteria contribution to the total prokaryotes decreased, which appears to be linked to the more oligotrophic conditions of the Eastern Mediterranean basins. Despite the increased importance of Archaea, the contributions of Crenarchaeota Marine Group I to the total pool was relatively constant across the investigated stations, with the exception of Matapan-Vavilov Deep, in which Euryarchaeota Marine Group II dominated. Overall, our data suggest that deeper areas of the Mediterranean Sea share more similar communities with each other than with shallower sites. Freshness and quality of sedimentary organic matter were identified through Generalized Additive Model analysis as the major factors for describing the variation in the prokaryotic community structure and activity in the surface deep-sea sediments. Longitude was also important in explaining the observed variability, which suggests that the overlying water masses might have a critical role in shaping the benthic communities.     

Community Structure of Archaea from Deep-Sea Sediments of the South China Sea

Using the archaeal 16S rRNA gene, we determined the community structures of archaea of subseafloor sediments (～9-11 m below seafloor) from two geographically distant cores (MD05-2896, south, water depth 1,657 m; MD05-2902, north, water depth 3,697 m) in the South China Sea. Euryarchaeota accounted for 61.4% of total archaeal clone libraries at MD05-2896 and 56.2% at MD05-2902. At both locations, the Euryarchaeota-related sequences were dominated by Marine Benthic Group D, Terrestrial Miscellaneous Eryarchaeotal Group, and South African GoldMine Euryarchaeotal Group; the Crenarchaeota-related sequences were dominated by Marine Benthic Group B, Marine Group I, pSL12, and C3. The community structure showed no significant difference with depth at each location, suggesting the lack of stratification of archaeal populations in the deep-sea marine sediments in the South China Sea. On the other hand, the community structure is significantly different between the two sites, which may be related to geographical difference in the South China Sea.     

南海冷泉区深海沉积物中细菌的分离培养及多样性分析

为了认识南海深海冷泉区沉积物中可培养微生物的多样性,本文以冷泉区与非冷泉区两个站点的深海沉积物为样品,通过两种培养基(R2A海水培养基和2216E培养基)直接涂布或富集后平板分离纯化,从9个样品中共得到395株菌株,并通过16SrRNA基因鉴定,分属10个属。发现产芽胞细菌分布最广、丰度最大,包括3个属、15个种。其中芽胞杆菌(Bacillus)无论是在数量还是在种类上都分布最多。并且,随着水深和沉积物深度的增加,分离到的可培养微生物丰富度降低。本研究表明,即使在冷泉区,南海深海沉积物中产芽胞细菌也比较丰富。     

Anisakidae larvae found in marine fishes and squids from the Gulf of Tongking, the East China Sea and the Yellow Sea.

Marine fishes and squids caught in the Gulf of Tongking, the East China Sea and the Yellow Sea were dissected, and many Anisakidae larvae were found in them. The larvae of Anisakis simplex (Anisakis Type I larvae), the most important causative agent of anisakiasis, was found in about 30% of fishes and squids caught in the Gulf of Tongking and in about 60% of those caught in the East China Sea and the Yellow Sea. Larvae belonging to three other genera than Anisakis--Raphidascaris or Raphidascaroides, Hysterothylacium, and Terranova (Cannon Type I)--were also detected.     

Bacillus gaemokensis sp. nov., isolated from foreshore tidal flat sediment from the Yellow Sea

A Gram-positive, rod-shaped, endospore-forming organism, strain BL3-6^T, was isolated from tidal flat sediments of the Yellow Sea in the region of Tae-An. A 16S rRNA gene sequence analysis demonstrated that this isolate belongs to the Bacillus cereus group, and is closely related to Bacillus mycoides (99.0% similarity), Bacillus thuringiensis (99.0%), Bacillus weihenstephanensis (99.0%), Bacillus cereus (98.9%), Bacillus anthracis (98.8%), and Bacillus pseudomycoides (98.1%). The phylogenetic distance from any validly described Bacillus species outside the Bacillus cereus group was less than 95.6%. The DNA G+C content of the strain was 39.4 mol% and the major respiratory quinone was menaquinone-7. The major cellular fatty acids were iso-C_14:0 (17.8%), iso-C_16:0 (15.8%), and iso-C_12:0 (11.3%). The diagnostic amino acid of the cell wall was meso-diaminopimelic acid and the major cell wall sugar was galactose. The results of DNA-DNA hybridization (<55.6%) and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain BL3-6^T from the published Bacillus species. BL3-6^T therefore represents a new species, for which the name Bacillus gaemokensis sp. nov. is proposed, with the type strain BL3-6^T (=KCTC 13318^T =JCM 15801^T).     

南黄海、东海鲐鲹鱼索饵场浮游动物生态特征

本文采用比较的方法,研究了黄海南部东海北部和东海中南部两个鲐鲹鱼索饵场浮游动物生态特征。结果表明,南部渔场生物量的极差、变异系数小于北部渔场。若扣除个别站位的影响,则南部渔场的平均值高于北部渔场。北部渔场群落多样度、均匀度、丰富度、单纯度较高,南部渔场则相反。北部渔场浮游动物优势种较少,且大多数种具有较高的聚集强度;而南部渔场优势种较多,优势度低,聚集性差。