Progeny selection for agronomic characters in early generations of a potato breeding programme

 Repeatabilities of progeny means, and the univariate cross prediction method were used to study the effectiveness of progeny selection for agronomically important characters in early generations of potato (Solanum tuberosum L.) breeding. The study was based on 90 progenies (72 crosses+18 selfs) evaluated for three successive generations, i.e. seedling, first clonal and second clonal generations. Repeatabilities of progeny means were measured as correlation coefficients between generations. In the univariate cross prediction method, progeny means and within-progeny standard deviations were used to calculate the proportions of clones exceeding the target values, and correlation coefficients between generations for predicted and observed proportions of clones, were calculated. Population means varied from generation to generation. Correlation coefficients between generations for progeny means for most of the characters were significant, but moderate. These were higher than the correlation coefficients between predicted and observed proportions of clones exceeding the target values. The possibility of using progeny means as a selection parameter to reduce the number of genotypes to be examined in later stages by rejecting the poor crosses in seedling generation is discussed. Received: 8 January 1997/Accepted: 28 February 1997     

Cross prediction in a potato breeding programme by evaluation of parental material

Summary It is shown that it is possible to obtain an indication of the parental value of heterozygous cultivars of potatoes for the characters breeders' preference, total tuber weight, mean tuber weight and number of tubers. Three methods of predicting the characteristics of progeny produced from particular parental cultivars were examined, namely: univariate cross prediction (based on mean and variance), mid-parent values and mid-self values. All provided some indication of which crosses would give superior progeny, but univariate cross prediction gave rankings which correlated most highly with observed performance in the second clonal year for the characters breeders' preference and total tuber weight. Interestingly, mid-self values gave the best predictions in the case of mean tuber weight and number of tubers. It is suggested that such predictions of parental value, especially when based on univariate cross prediction at the seedling stage, are worth carrying out in practical breeding programmes.     

The repeatability of progeny means in the early generations of a potato breeding programme

The progenies from eight crosses between potato clones were examined. The clones were grown as seedlings in a glasshouse and subsequently from tubers in the field at two sites in two consecutive years. At harvest, all the clones were visually assessed by four breeders using a 1–9 scale of increasing desirability. Although there was a formally significant interaction between progenies and environments, the rank of the mean of a cross remained relatively consistent over different growing conditions. It is suggested, therefore, that progeny evaluation by breeders' visual preference can be used to identify the crosses with the highest potential of producing commercial cultivars.     

Use of mid-parent values and progeny tests to increase the efficiency of potato breeding for combined processing quality and disease and pest resistance

A potato breeding strategy is presented which avoids the common but ineffective practice of intense early-generation visual selection between seedlings in a glasshouse and spaced plants at a seed site. Once pair crosses have been made, progeny tests are used to discard whole progenies before starting conventional within-progeny selection at the unreplicated small-plot stage. Clones are also visually selected from the best progenies for use as parents in the next cycle of crosses whilst they are multiplied to provide enough tubers for assessment of their yield and quality. Mid-parent values, as well as progeny tests, are then used to select between the resultant crosses. Material from other breeding programmes can be included in the parental assessments and used in the next cycle of crosses if superior. Finally, in seeking new cultivars, the number of clones on which to practise selection is increased by sowing more true seed of the best progenies, but without selection until the small-plot stage. Traits considered are resistance to late blight [ Phytophthora infestans (Mont.) de Bary] and to the white potato cyst nematode [ Globodera pallida (Stone)], fry colour and tuber yield and appearance, as visually assessed by breeders. The theoretical superiority of the strategy for seeking new cultivars lies in being able to practise between-cross selection for a number of economically important traits within 1 or 2 years of making crosses, something that is not possible on individuals as seedlings in the glasshouse or spaced plants at the seed site. This also means that full-sib family selection can be operated on a 3-year cycle, an improvement on current practice of clonal selection on what is often at least a nine-year cycle. New cultivars can be sought with more confidence from the best progenies in each cycle, and modern methods of rapid multiplication used to reduce the number of clonal generations required to find the best clones.     

The efficiency of visual selection in early generations of a potato breeding programme

The efficiency of visual selection in the early generations of a potato breeding programme is examined. Tubers from 571 potato genotypes were scored by four breeders after being grown, from true seed, in a glasshouse and in the field for three consecutive years. The four breeders were in good agreement as to which clones would be selected in any environment. The association between breeders was greatest when the clones were grown in plots in the field. All correlations of breeders' preferences between different environments were significantly greater than zero, but only accounted for a small percentage of the total variation. Selection in both the glasshouse and first clonal year produced a desirable response. However, such selection carried a high cost in terms of losing clones with commercial potential. Comparison of a random sample of clones with ones from the same crosses which had been selected, indicated that selection in the glasshouse and first clonal year was at best random with some suggestion, however, of a negative effect.     

Organelle DNA variation in parental<Emphasis Type="Italic"> Solanum</Emphasis> spp. genotypes and nuclear-cytoplasmic interactions in<Emphasis Type="Italic"> Solanum tuberosum</Emphasis> (+)<Emphasis Type="Italic"> S. commersonii</Emphasis> somatic hybrid-backcross progeny

Nuclear-cytoplasmic interactions can influence fertility and agronomic performance of interspecific hybrids in potato as well as other species. With the aim of assessing the potential value of a novel recombinant cytoplasm derived by interspecific somatic hybridization, backcross progeny were produced by crossing a somatic hybrid between Solanum tuberosum (tbr) and the wild incongruous species S. commersonii (cmm) with various potato clones. BC₁ clones were evaluated for male fertility and other agronomic traits. Male fertility clearly depended on the cross direction and the cytoplasm source. Genotypes with cytoplasms sensitive to nuclear genes derived from Solanum commersonii and inducing male sterility showed identical mtDNA composition, as based on mtDNA analyses with various PCR-based and RFLP markers. On the other hand, genotypes with cytoplasms not inducing male sterility in the presence of the cmm nuclear genes showed a different mtDNA organisation. Analysis of cpDNA confirmed similarity of cytoplasmic composition in CMS-inducing genotypes and clear differences with the others. Genotypes with recombinant cytoplasm induced by somatic hybridization generally showed similar agronomic performances in reciprocal hybrids with tbr cytoplasm, suggesting that the novel cytoplasm can be used in potato breeding.Contribution no. 24 from the Institute of Plant Genetics, Research Division of Portici     

Identification of superior parents and crosses in potato breeding programmes

 The effectiveness of parent per se performance and their self values in the selection of superior parents and crosses in potato breeding programmes was studied by evaluating progenies of 72 crosses from 18×4 (female×male) matings, parents and their selfs for ten agronomically important characters for three successive generations. Simple correlation coefficients were computed between parent per se performance versus general combining ability effects, female per se performance versus progeny means of females, female self values versus progeny means of females, mid-parent values versus progeny means of crosses and mid-self values versus progeny means of crosses. The magnitude of the significant correlation coefficients showed that progeny means of crosses could be moderately predicted by the mid-self values for plant vigour and general impression in clonal generations. Similarly, the progeny means of females in clonal generations could be predicted by their per se performance for general impression. Female self values in the second clonal generation were moderately associated with progeny means of females in that generation for general impression and plant vigour. Parent per se performance and mid-parent values were, in general, ineffective in predicting the general combining ability and the progeny means of the crosses, respectively. The poor predictive powers of parent per se performance and mid-parent values are discussed in relation to the relative importance of specific and general combining ability effects. Received: 23 April 1997 / Accepted: 6 August 1997     

Spatial variation in local pollen flow and mating success in a Picea abies clone archive and their implications for a novel ��breeding without breeding�� strategy

Currently, Norway spruce (Picea abies) breeding in Sweden is based on crosses between the best clones followed by clonal testing of the progenies to select for the long-term breeding population. An alternative breeding strategy called “Breeding without Breeding” (BwB) is proposed, which, in principle, relies on the DNA marker-based pedigree reconstruction from wind-pollinated progenies instead of controlled crosses. To test whether the pedigree structure could be established from progenies of clonal trials, we investigated the spatial pattern of local pollen flow and paternity assignment in a clone archive of Norway spruce. The results showed that 42% of the progeny can be assigned to fathers within 30-m distance with high confidence. Effective pollen dispersal decreased rapidly with distance and followed exponential distribution on local scale. The extent of close-neighbor (within 6 m) mating ranged from 0% to 48% among grafts with an average of 13%. Distance explained 25% deviance in mating success, and other factors such as phenology and spatial configuration of the clones should have contributed the rest. The success of parentage assignment in clone archive opens up the possibility to apply BwB in clonal trials of species that are easy to propagate vegetatively. This procedure could substantially shorten the breeding cycle and still give similar gain per year as the conventional breeding.     

Phenetic Relationship of Rubber Tree Clones

Twenty clones of the breeding population of Hevea brasiliensis were evaluated for phenetic diversity. The test-clones included six clones developed in Nigeria, ten Malaysian clones, two clones from Indonesia and a clone from each of Brazil and Sri Lanka. Data collected on fifteen seed characters in 1998 and 1999 were utilized for multivariate analysis. Cluster analysis of data matrix of clonal mean seed characters was conducted to produce principal component axes, dendrograms and Tocher's clusters in 1998, 1999 and the combined data. There was taxonomic isolation of the recent collection from Brazil (IAN 710) from the other clones that are either members or descendants of the Wickham collection of 1876. There was a continuum of phenetic diversity from the highly divergent to the closely related pairs of clones. The highly divergent clones are expected to produce heterotic progenies in crosses while crosses among clones with close phenetic similarity should be avoided. This will guide against inbreeding depression and genetic erosion. This revised version was published online in July 2006 with corrections to the Cover Date.     

Establishment of a quasi-field trial in <Emphasis Type="Italic">Abies nordmanniana</Emphasis>—test of a new approach to forest tree breeding

This study used DNA markers to establish a quasi-field trial within a production Christmas tree stand produced from seed collected in an open-pollinated clonal seed orchard (CSO). A total of 660 offspring from the CSO, which comprised 99 clones of Abies nordmanniana, were genotyped with 12 microsatellites. Parentage was assigned successfully to 93% and 98% of the progeny at 95% and 80% confidence, respectively. The assignment rate declined only to 90% when the number of markers was reduced to 10. The distribution of parentage to the offspring among the CSO clones was highly skewed. The most successful clone was assigned as parent in 7% of the cases, and only 92 of the 119 potential parental genotypes were assigned as parents. The obtained pedigree was used to estimate breeding values for the CSO clones for five characters relevant for Christmas tree breeding. For high-heritability traits, such as flushing, accurate breeding values could be estimated for a considerable proportion of the clones. To estimate breeding values for low-heritability traits, such as Christmas tree quality score, more genotyped offspring will be required. The largest drawback of the method is the highly skewed distribution of parentage among the parents in the seed orchards, making it difficult to calculate breeding values for all clones. The approach seems well suited for tree breeding that puts more emphasis on pure selection of parental genotypes and less on estimating quantitative genetic parameters.     

Use of random amplified polymorphic DNA (RAPD) markers in the discrimination and verification of genotypes in Eucalyptus

We carried out four separate studies using random amplified polymorphic DNA (RAPD) markers to analyse samples of Eucalyptus supplied by several different organisations. The objective was to examine the reproducibility of the RAPD technique and its ability to discriminate between individual genotypes for verification of clonal identities. We found that RAPD profiles that are unique to a genotype can be generated reliably and simply and that even closely related genotypes can be distinguished. In addition, in each of the four studies, we detected cases where the plant material studied had been mis-sampled or mis-labelled (i.e. the RAPD profiles were not consistent with the identification numbers): (1) ramets of a Eucalyptus grandis clone were found to be derived from 2 different clones; (2) ramets labelled as 2 different Eucalyptus hybrid clones were found to be the same clone, owing to a mis-planted clonal hedge; (3) samples supplied as a single progeny of a controlled E. nitens cross were derived from two crosses involving different pairs of parents; (4) mis-labelling was detected for ramets of 4 of a set of 10 clones of E. grandis and E. camaldulensis. For three of the four studies, the detection of genotype mis-identifications was unexpected, suggesting that labelling or sampling errors during the handling of plant material are a frequent occurrence, with potentially serious economic consequences.     

Use of seedling progeny tests for genetical studies as part of a potato (Solanum tuberosum subsp. tuberosum) breeding programme

A diallel set of crosses, including selfs and some reciprocal crosses, was made between 15 parents chosen for their male fertility from those included in a tetraploid potato (Solanum tuberosum subsp. tuberosum) breeding programme at the Scottish Crop Research Institute. Seedling progeny tests were used to evaluate the progenies for non-race-specific resistance to late blight (Phytophthora infestans) in both foliage and tubers, quantitative resistance to the white potato cystnematode (PCN) (Globodera pallida) and the commercial worth of their tubers as judged by breeders' visual preference. No reciprocal differences were found. Comparisons of the selfs and crosses revealed inbreeding depression for breeders' preference, which varied among the parents from negligible to severe, whilst there were also statistically significant differences for foliage and tuber blight, but not for PCN. When the selfs were omitted from the combining ability analyses, large differences in general combining ability (GCA) were found for all four traits, and smaller differences in specific combining ability for tuber blight and breeders' preference. The only statistically significant correlation between GCAs for different traits was a favourable one of r = 0.56 between foliage and tuber resistance to late blight. It was concluded that prospects were good for simultaneously improving all four traits by multitrait genotypic recurrent selection.     

Genomic mating in outbred species: predicting cross usefulness with additive and total genetic covariance matrices

Diverse crops are both outbred and clonally propagated. Breeders typically use truncation selection of parents and invest significant time, land, and money evaluating the progeny of crosses to find exceptional genotypes. We developed and tested genomic mate selection criteria suitable for organisms of arbitrary homozygosity level where the full-sibling progeny are of direct interest as future parents and/or cultivars. We extended cross variance and covariance variance prediction to include dominance effects and predicted the multivariate selection index genetic variance of crosses based on haplotypes of proposed parents, marker effects, and recombination frequencies. We combined the predicted mean and variance into usefulness criteria for parent and variety development. We present an empirical study of cassava (Manihot esculenta), a staple tropical root crop. We assessed the potential to predict the multivariate genetic distribution (means, variances, and trait covariances) of 462 cassava families in terms of additive and total value using cross-validation. Most variance (89%) and covariance (70%) prediction accuracy estimates were greater than zero. The usefulness of crosses was accurately predicted with good correspondence between the predicted and the actual mean performance of family members breeders selected for advancement as new parents and candidate varieties. We also used a directional dominance model to quantify significant inbreeding depression for most traits. We predicted 47,083 possible crosses of 306 parents and contrasted them to those previously tested to show how mate selection can reveal the new potential within the germplasm. We enable breeders to consider the potential of crosses to produce future parents (progeny with top breeding values) and varieties (progeny with top own performance).     

Single cross alfalfa (Medicago sativa L.) hybrids produced via 2n gametes and somatic chromosome doubling: experimental and theoretical comparisons

Summary The potential breeding value of 2n gametes from diploid alfalfa (2n = 2x = 16) was tested by comparing single cross alfalfa hybrids produced via 2n = 2x gametes from diploids versus n = 2x gametes from somatic-chromosome-doubled, tetraploid counterparts. Three diploid clones, designated 2x-(rprp), homozygous for the gene rp (conditions 2n gamete formation by a first division restitution mechanism) were colchicine-doubled to produce their tetraploid counterparts, designated 4x-(SCD). These six clones were crossed as males to the same cytoplasmic male sterile clone. Yield comparisons of progeny from the six clones demonstrated a significant yield increase of the hybrid progeny from 2n = 2x gametes from the diploids over the hybrid progeny from n = 2x gametes from the chromosome doubled tetraploid counterparts. The yield gain ranged from a 12% increase to a 32% increase. Theoretical comparisons indicated the 2n = 2x gametes from diploids would have 12.5 to 50% more heterozygous loci, on average, than the n = 2x gametes derived from somatic doubling. These results confirm the importance of heterozygosity on alfalfa yield, and the results demonstrate that 2n gametes formed by first division restitution offer a unique method for producing highly heterotic alfalfa hybrids.     

Intraspecific variability in response to stimuli for male and ephippia formation in Daphnia pulex

Natural clones and clones from laboratory crossings of Daphnia pulex have been tested in their response to stimuli for male and ephippia formation. The clones are from ponds in Illinois, USA, an area with both obligate and cyclical clones of D. pulex. The progeny from two types of crosses were studied: 1) crosses between an obligate clone producing males and a cyclical clone producing only females, and 2) self-fertilization within a cyclical clone producing both sexes. Both the natural and the artificial clones showed great variation in response to environmental stimuli for males. Ephippia response seems more equal among the clones, but two of the artificial clones could hardly be stimulated to produce ephippia in the induction experiments. In crowded cultures, however, they produced a few. Crossings between cyclicals and obligates yielded mostly cyclical progeny. Progeny from the selfed clone had low survival and fecundity.     

Comparison of FDR- and SDR-derived tetraploid progeny from 2x×4x crosses using haploids of Solanum tuberosum L. that produce mixed modes of 2n eggs

 The relationship between heterozygosity and heterosis in tetraploid potato (Solanum tuberosum subsp. tuberosum L., 2n=4x=48) was examined in a series of first-division restitution (FDR)- and second-division restitution (SDR)-derived tetraploid subpopulations. The subpopulations were constructed using two 2n egg-producing, mixed-mode haploids (2n=2x=24) crossed to three tetraploid (2x= 4x=48) potato clones. Half-tetrad analysis using a co-dominant electrophoretic marker (Pgm-2), which is closely linked to the centromere, discriminated between FDR- and SDR-derived 4x progeny. The FDR:SDR ratio of the 4x progeny observed was dependent upon the haploid parent used in the 2x×4x cross. Field studies were conducted between 1992 and 1996 to compare the yield and specific gravity of the two subpopulations and their parents from three crosses. There was no difference in the total tuber yield or specific gravity between the FDR- and SDR-subpopulations based upon family means, despite the expectation that FDR-derived progeny would transmit a greater portion of the genome’s heterozygosity intact than SDR-derived progeny. The 4x parent in each family had a higher yield than either 4x progeny subpopulation. Inbreeding, as a consequence of the haploidization process and a lack of genetic diversity, may have negated any advantage of the FDR-derived progenies over the SDR-derived progenies. Received: 14 April 1998 / Accepted: 12 May 1998     

Comparisons of alfalfa somaclonal and sexual derivatives from the same genetic source

Summary Tetraploid alfalfa (Medicago sativa L.) clones were derived from the same diploid genetic background by four different methods. A phenotypically superior clone was selected from each method and compared for herbage yield and fertility. The four methods and their best clones were: a) In vitro somatic chromosome doubling of one diploid hybrid (HG2-4x); b) selection within a two allele tetraploid synthetic population derived from HG2-4x (HAG); c) somaclonal variant selection from cell suspension culture of the diploid hybrid (NS1); and d) sexual polyploidization of a sibling hybrid (HXG). Clones HG2-4x, HAG, and NS1 were likely diallelic or monoallelic at all loci. Clone HXG was probably tetrallelic or triallelic at most loci. Experiments measured fertility, clonal herbage yield, and herbage yield of test cross progeny for each selected clone. Fertility rankings were HXG = HAG > NS1 > HG2-4x. Clonal herbage yield rankings were HXG = HAG > NS1 > HG2-4x. Test cross progeny herbage yield rankings varied depending on the tester, but, in general, HXG HAG NS1 HG2-4x. Overall the best clones from the sexual methods exceeded the best somaclonal variant which, in turn, was better than the chromosome doubled clone.     

Chromosome doubling of 2x Solanum species by oryzalin: method development and comparison with spontaneous chromosome doubling in vitro

A potato breeding scheme implies the possibility of ploidy level manipulation either by reducing the chromosome number of cultivars from 48 to 24 to be able to cross them with diploid related species or by doubling diploid material to reach the generally optimal tetraploid level. In vitro spontaneous chromosome doubling is widely used but can lead to somaclonal variation. Since oryzalin has proven to be efficient as a chromosome doubling agent on potato cell suspension cultures, we tried this herbicide on various Solanum species and interspecific diploid hybrids. A 24 h dip in a 28.8 M aqueous oryzalin solution applied on apical buds was the most efficient treatment in terms of tetraploid plant production (mean = 4.1 tetraploid plants for 10 treated buds over 4 genotypes). However 50–100% of the regenerated tetraploid plants acclimatized after in vitro treatment proved to be chimaeric. Consequently, a selection procedure in the progeny was necessary to obtain real and stable doubled clones and final yields were low. This technique is easy to apply and could be a good alternative to chromosome doubling by spontaneous in vitro regeneration in the case of refractory genotypes especially where somaclonal variation is problematic. Percentage of tetraploids among the regenerated plants varied from 6 to 29% with the oryzalin doubling technique while it varied from 20 to 78% by in vitro spontaneous doubling for five diploid genotypes. An observation of the progeny indicated that chimaeras were more frequent using oryzalin (50–100% of the initially supposed tetraploid plants) than when chromosomes doubled spontaneously (4–67% of the initially supposed tetraploid plants).     

The effect of crossing distances and population subdivision on floral morphology inScleranthus annuus (Caryophyllaceae), a selfing annual

I used a discontinuous population ofScleranthus annuus (Caryophyllaceae) to study the effect of crossing distances on flower morphology of the progeny. Four types of progeny were produced by artificial selfing, crossing with pollen-donors from the same patch in the population, crossing with pollen from donors from other patches in the population and inter-population crosses. The size of gynoecium parts and 12 sepal characters in this petal-lacking species were significantly influenced by the type of cross and the patch in the population from where the seed-parents originated. All comparisons of progeny types except selfed vs progeny produced by within-patch crosses were significantly separated from each other, while all four seed-parent patches used were significantly separated in a multidimensional space.     

Use of Ipomoea trifida germ plasm for sweet potato improvement. 3. Development of 4x interspecific hybrids between Ipomoea batatas (L.) Lam. (2n=6x=90) and I. trifida (H.B.K) G. Don. (2n=2x=30) as storage-root initiators for wild species

Summary More than 28,000 pollinations were carried out between 5 Ipomoea batatas and 41 diploid I. trifida accessions of diverse origins to obtain 4x interspecific hybrids. From the resultant 730 seeds, 248 plants were finally obtained. Ploidy level determination of the progeny showed unexpected results: 52 individuals were hexaploid, 5 were pentaploid, 190 were tetraploid, as expected, and one was not determined. The existence of 5x and 6x progenies from 6x x 2x crosses not only confirmed the presence of 2n gametes but also their successful function in gene flow between ploidy levels and polyploidization within this genus. The progeny and their cultivated parents were planted in an observation field. The cultivated parents produced 0.49 kg/plant or less. Most 4x progenies did not produce storage roots or had very poor yields; nonetheless, and despite their cultivated parents' poor yields, 8 genotypes yielded between 0.81 and 1.50 kg/plant.A new scheme, using the 4x interspecific hybrids, is proposed for evaluating 2x and 4x wild accessions of the section Batatas to which the sweet potato belongs. Other possible uses of the 4x hybrids in breeding and genetics of the sweet potato are also discussed.