Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals

Phytophthora ramorum is an oomycete plant pathogen classified in the kingdom Stramenopila. P. ramorum is the causal agent of sudden oak death on coast live oak and tanoak as well as ramorum blight on woody ornamental and forest understorey plants. It causes stem cankers on trees, and leaf blight or stem dieback on ornamentals and understorey forest species. This pathogen is managed in the USA and Europe by eradication where feasible, by containment elsewhere and by quarantine in many parts of the world. Genomic resources provide information on genes of interest to disease management and have improved tremendously since sequencing the genome in 2004. This review provides a current overview of the pathogenicity, population genetics, evolution and genomics of P. ramorum. Taxonomy: Phytophthora ramorum (Werres, De Cock & Man in't Veld): kingdom Stramenopila; phylum Oomycota; class Peronosporomycetidae; order Pythiales; family Pythiaceae; genus Phytophthora. Host range: The host range is very large and the list of known hosts continues to expand at the time of writing. Coast live oak and tanoak are ecologically, economically and culturally important forest hosts in the USA. Rhododendron, Viburnum, Pieris, Syringa and Camellia are key ornamental hosts on which P. ramorum has been found repeatedly, some of which have been involved in moving the pathogen via nursery shipments. Disease symptoms: P. ramorum causes two different diseases with differing symptoms: sudden oak death (bleeding lesions, stem cankers) on oaks and ramorum blight (twig dieback and/or foliar lesions) on tree and woody ornamental hosts. Useful websites: http://nature.berkeley.edu/comtf/ , http://rapra.csl.gov.uk/ , http://www.aphis.usda.gov/plant_health/plant_pest_info/pram/index.shtml , http://genome.jgi‐psf.org/Phyra1_1/Phyra1_1.home.html , http://pamgo.vbi.vt.edu/ , http://pmgn.vbi.vt.edu/ , http://vmd.vbi.vt.edu./ , http://web.science.oregonstate.edu/bpp/labs/grunwald/resources.htm , http://www.defra.gov.uk/planth/pramorum.htm , http://www.invasive.org/browse/subject.cfm?sub=4603 , http://www.forestry.gov.uk/forestry/WCAS‐4Z5JLL     

Web Watch

Plant biology - with an emphasis on photosynthesis

The Great Plant Escape http://www.urbanext.uiuc.edu/gpe/gpe.html

The Power of Green.http://researchmag.asu.edu/stories/power.html

Photosynthesis http://biology.ck.uc.edu/courses/biol04/photosyn.htm

An Introduction to Photosynthesis and its Applicationhttp://photoscience.la.asu.edu/photosyn/education/photointro.html

Aliens Explorers - Photosynthesis http://www.alienexplorer.com/ecology/topic3.html

The Photosynthesis Processhttp://www.ifmt.nf.ca/mi-net/enviro/photo3.htm     

Inter- and intra-specific diversity of Cuban Pinguicula (Lentibulariaceae) based on morphometric analyses and its relation with geographical distribution

Background: Phenotypic variations have been observed in populations of west Cuban Pinguicula species. Such populations occur in patches under different ecological conditions associated with specialised habitats and separated by geographical and ecological barriers, which can lead to morphological differentiation.

Aims: To analyse morphological diversity among species and populations of Cuban Pinguicula; and to test if morphological variability is associated with geographical distribution and distance between populations.

Methods: We sampled a total of eight populations of P. albida, P. cubensis and P. filifolia and tested for morphometric differences among them by Principal Component Analysis (PCA) and analysis of variance (ANOVA) based on 31 quantitative traits. We also assessed the geographical isolation with respect to morphological distance.

Results: The studied species showed high morphological variability at both species and population level. Reproductive characteristics appeared to be more promissory than vegetative ones in distinguishing geographical groups since they clearly defined populations; nevertheless a strong component of individual variation was observed. According to the distance analysis, such morphological variations were correlated with fragmented populations and isolation and allowed the differentiation of two morphotypes of P. albida and two of P. filifolia.

Conclusions: We conclude that high phenotypic variation of the analysed species is related to geographical and ecological isolation which have led to the differentiation of morphotypes within species.     

Inter-regional hybrids of native and non-native Centaurea sulphurea inherit increased competitive ability from the non-natives

Background: Exotic species can rapidly develop adaptations to their non-native regions, such as increased size and competitive ability. Although these traits are believed to be responsible for invasive success, some non-invasive exotic species display them too. This suggests that increased size and competitive ability might be necessary but not sufficient to turn an exotic into a successful invader.

Aim: To assess size and competitive ability of the exotic non-invasive weed Centaurea sulphurea, and of inter-regional hybrids between native and non-native populations.

Methods: We experimentally produced a cohort of C. sulphurea individuals from the native range of the species in Spain, from its non-native range in California, as well as hybrids between the two regions. We grew these plants in pots in competition with the grass Bromus hordeaceus, or alone in control pots.

Results: Individuals from California were larger and better competitors than individuals from Spain. Furthermore, inter-regional hybrids showed competitive responses similar to that of individuals from California.

Conclusions: Our results confirm that increased competitive ability might be more frequent than previously thought among introduced species, since it can be detected in at least some exotic non-invasive species. They also illustrate the importance of maternal effects, how locally adapted traits are conserved and spread in the non-native ranges of exotic species, and suggest that plant size and competitive ability are not directly associated in this species.     

The taxonomic status and range extension of Grimmia exquisita J.Muñoz (Grimmiaceae,Bryophyta)

Introduction. We found an unusual specimen collected in 1975 from Xinjiang Province, China which may represent Grimmia exquisita J.Muñoz. However, this species is known only from the type localities and its taxonomic status is still controversial.

Methods. A voucher of the Chinese specimen is deposited in IFP herbarium. This specimen was studied with the typical anatomical and morphological methods applied within Grimmia (Maier, 2010).

Key Results. The Chinese species represents G. exquisita. After examining the type specimens of G. exquisita, we confirmed that it should be recognised as a distinct species.

Conclusions. This study expands the distribution area of G. exquisita to East Asia. The Chinese specimen was discovered in a rather different habitat to its types and consequently, G. exquisita may be a more widely distributed species. Evaluation of the Grimmia specimens in many different herbaria is needed.     

Colletotrichum: tales of forcible entry, stealth, transient confinement and breakout

Taxonomy: Imperfect, anamorphic fungus (subdivision Deuteromycotina, form-class Deuteromycetes, form-subclass Coelomycetidae, form-order Melanconiales, form-family Melanconiaceae) with 39 ‘accepted’ species [Sutton, B.C. (1992) The genus Glomerella and its anamorph Colletotrichum. In: Colletotrichum: Biology, Pathology and Control (Bailey, J.A. and Leger, M.J., eds). Wallingford, UK: CAB International, pp. 1–26.] which continue to be revised and clarified by molecular taxonomic techniques. Species complexes and subspecific groups have been proposed. Host range: Species of Colletotrichum attack a large number of important tropical and sub-tropical crop species and cause economically significant diseases of cereals, grain legumes, vegetables, forage legumes, fruit crops and perennial crops. Tropical and sub-tropical fruit production is significantly affected by postharvest anthracnose. Disease symptoms: Symptoms of the attack are commonly known as anthracnose and comprise dark, sunken, lenticular necrotic lesions containing the acervuli of the pathogen. Key attractions: A model fungus for research on host specificity, mycoherbicides, appressorial melanization, appressorial function, quiescent infection, fungal lifestyles, intracellular hemibiotrophy and the determinants of the switch from biotrophy to necrotrophy among others. Useful websites: http://www.uark.edu/depts/plant/ , http://www.sorghumanthracnose.org/ , http://www.iacr.bbscr.ac.uk/ppi/staff/roc_rc.html     

Nomenclature of the horned turbans previously known as Turbo cornutus [Lightfoot], 1786 and Turbo chinensis Ozawa & Tomida, 1995 (Vetigastropoda: Trochoidea: Turbinidae) from China,Japan and Korea

Based on the examination of old literature, the names of two species of Batillus Schumacher, 1817, a subgenus of Turbo Linnaeus, 1758, are revised. Turbo cornutus [Lightfoot], 1786 should be restricted to the species endemic to southern China and Taiwan. Turbo chinensis Ozawa & Tomida, 1995 is the junior synonym of T. cornutus. The species of Japan and Korea has long been misidentified with T. cornutus. Turbo japonicus Reeve, 1848 has been used for two very different species: one from Mauritius and another from Japan, with the species from Mauritius being valid, and a member of the subgenus Marmarostoma Swainson, 1840, while the Japanese/Korean species, lacking an available name, is provided with a new replacement name, T. sazae nom. nov.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:7E99BA4B-CEB5-4510-BC5E-7852232926B8     

Dicranum scottianum Turner (Dicranaceae): synonyms,a type and the correct author

Introduction. The moss Dicranum scottianum Turner, described based on material collected in Ireland by Robert Scott, is currently known from Europe and Macaronesia (Canary Islands and the Azores). The previously proposed authorship of ‘Turner ex Robt. Scott’ and lectotype for this name proved to be erroneous.

Methods. Over 60 herbarium specimens, including types, of D. scottianum and putative allies were examined with the aim of outlining the diagnostic features of the taxon or taxa concerned, and establishing any necessary synonymy.

Key results. The true authorship of Dicranum scottianum by Turner is re-established, and the name is effectively lectotypified with extant original material from BM. The type specimen and some subsequent collections of the species are described and illustrated. New nomenclatural synonyms of D. scottianum (namely Dicranum canariense Hampe ex Müll.Hal., D. erythrodontium Hampe ex Müll.Hal. and Orthodicranum allorgei J.J.Amann & Loeske) are detailed.

Conclusions. Dicranum scottianum is characterised by its asymmetrical leaves with one side of the leaf wider than the other, the difference in the angle of insertion of the lamina with respect to the costa (one side of the leaf is inserted at a 45° angle and the other is plane but widely incurved), the laminal cells that are thick-walled with quadrate or rectangular lumina (seen in cross-section), and the wide and deep costa that has two bands of stereids.     

Morphological differentiation of Icelandic Redpolls,Acanthis flammea islandica

Capsule The analyses support the grouping of the three Acanthis species, although a large split is observed between the A. hornemanni subspecies.

Aims To investigate the morphological variation in A. f. islandica among different periods of the year and its morphological differentiation from the other subspecies A. f. flammea and A. f. rostrata, and also from the redpoll species, A. cabaret and the two subspecies of A. hornemanni, exilipes and hornemanni.

Methods The subspecies status of the Icelandic population was evaluated with Amadon's rule, by comparing its variation of traits to the distribution of the traits in different species/subspecies of the group.

Results A. f. islandica is characterized by intermediate wing, bill and tail lengths. Based on the 75% rule, wing length and bill depth can be used to discriminate A. f. islandica from both extreme morphs of redpolls (currently classified as different species); A. hornemanni and A. cabaret, and tail and wing length can distinguish A. f. islandica from its conspecifics A. f. flammea. The overall morphological divergence within the redpoll complex is not supported by association to the studied nuclear markers.

Conclusion The taxonomic status of the three redpoll species is supported by Amadon's rule, however the subspecies status of the Icelandic Redpoll remains unclear.     

Spatial patterns of species diversity in sand dune plant communities in Yucatan,Mexico: importance of invasive species for species dominance patterns

Background: Coastal ecosystems in Mexico remain understudied in spite of their ecological, economic and conservation value and are being impacted by human activities along the coast. Knowledge on spatial patterns of plant species distribution that helps preserve these fragile ecosystems is crucial.

Aims: We evaluated differences in species richness, species diversity and species dominance patterns in 16 plant communities as well as the degree to which differences were driven by climatic conditions in sandy dunes in Yucatán. We evaluated the importance of invasive species in mediating patterns of species diversity and species dominance patterns.

Results: We found wide variation in plant species richness, species diversity and species dominance patterns among communities that stems from broad climatic differences along dune systems. Invasive plants represent almost one-third of total species richness and seem to be drastically changing the species dominance patterns in these communities.

Conclusions: Regional climatic differences along the Yucatán north coast seems to be a major driver of plant diversity and species composition. Our findings suggest that invasive plants have successfully colonised and spread along the coast over the past 30 years. Even though invasive species do not alter spatial patterns of species diversity, they are becoming more dominant with potential detrimental consequences for native plants.     

Transplanting the leafy liverwort Herbertus hutchinsiae: a suitable conservation tool to maintain oceanic-montane liverwort-rich heath?

Background: Translocating plants for conservation purposes can be a useful tool to enhance existing populations, restore lost populations or create new ones, but has rarely been done for bryophytes, especially liverworts.

Aims: Here, the leafy liverwort Herbertus hutchinsiae, a representative species of oceanic-montane liverwort-rich heath, was translocated to unoccupied habitat within its current range, to establish whether its restricted distribution is due to habitat or dispersal limitation.

Methods: Feasibility of establishing new populations outside the current distribution range was assessed, to test the suitability of the species for assisted colonisation. Furthermore, transplants were grown at degraded sites where the species had declined to assess potential for restoration.

Results: Although maximal growth rates occurred within-range, transplants grew at all sites, indicating that the species could be dispersal limited; a conclusion supported by distribution modelling.

Conclusions: Assisted colonisation is thus an option for this species to overcome dispersal limitation and to track future climate space. Reinforcement of populations at degraded sites is only recommended if the pressure causing the degradation has been removed. These findings provide an evidence base for practical conservation management.     

Squalius semae,a new species of chub from the Euphrates River,Eastern Anatolia (Teleostei: Cyprinidae)

In a study of the fishes of the Euphrates River (Persian Gulf basin) three species of Squalius belonging to the cephalus-group were found: The Tohma population was identified as S. seyhanensis and the Merzimen and Hilvan populations as S. berak. The comparison of 28 metric and 5 meristic parameters and morphological characters showed that the populations of the northern Euphrates River drainages are distinct and belong to a hitherto unnamed species. We describe it here as Squalius semae sp. n.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:D195B69C-C6CB-4DEB-B85D-5B695F917CE5     

Genetic profiling of the critically endangered palm species Medemia argun using newly developed chloroplast DNA markers

Background: Medemia argun is a rare wild palm tree species. Its global existence is assumed to include the main population of about 1000 trees in the Nubian Desert of Sudan and some scattered individuals in southern Egypt. The species had previously been assumed to be extinct, but then reported to be extant about 20 years ago.

Aims: To assess genetic variation and explore population genetic structure of M. argun, through development and analysis of microsatellite markers.

Methods: The genome sequence mining approach was applied in order to identify microsatellites in the chloroplast genome of Bismarckia nobilis, a species closely related of M. argun. A set of 49 markers were designed, and their characteristics are now provided. Seven chloroplast DNA markers were developed for use in the genetic characterisation of this threatened species.

Results: Five markers were found polymorphic in M. argun, which enabled the assessment of the genetic diversity of the species. Significant genetic differentiation was observed among generations and collection sites, accompanied by low genetic variation. The seven markers developed were polymorphic among the wild relatives Hyphaene thebaica and Borassus aethiopum.

Conclusions: This is the first study to report molecular markers for M. argun. Our results suggest that the genetic consequences of population fragmentation in M. argun are beginning to be evident.     

Characteristics of Capoeta oguzelii,a new species of cyprinid fish from the Ezine Stream,Black Sea basin,Turkey (Teleostei: Cyprinidae)

Four species of Capoeta (C. baliki, C. banarescui, C. sieboldii and C. ekmekciae) have been reported from Black Sea drainages, to date. We recognised an additional species in the Ezine Stream in the Southern Black Sea basin. Based on the analysis of 21 metric and 8 meristic data, we concluded that the Ezine Stream population forms a distinct, unnamed species, which we have described as Capoeta oguzelii sp. n. This species can be distinguished from all other Capoeta species by the following combination of characteristics: small size, presence of only one pair of barbels, absence of a keratinised edge of the lower jaw, a weakly ossified last simple dorsal fin ray, 7–10 gill rakers on the first gill arch and 7½ branched dorsal fin rays.

http://www.zoobank.org/urn:lsid:zoobank.org:pub:066CC44A-3806-4DB7-8E88-AD971200E1EE     

Heterospecific pollen transfer from an exotic plant to native plants: assessing reproductive consequences in an Andean grassland

Background: The presence of exotic plants increases the heterospecific pollen (HP hereafter) received by native plants and reduces their reproductive output.

Aims: We assessed whether the exotic herb Echium vulgare (Boraginaceae) increased HP and reduced seed output of the native plants Phacelia secunda (Boraginaceae) and Stachys albicaulis (Lamiaceae) in an Andean locality, central Chile.

Methods: The presence of HP was studied in native plants growing with and without co-existence with the exotic E. vulgare. A complementary hand pollination experiment was carried out to assess whether E. vulgare pollen reduced the reproductive success of native plants.

Results: In the presence of E. vulgare, 17.3% and 3.7% of P. secunda and S. albicaulis individuals that coexisted with the exotic species received HP. For P. secunda, the number of conspecific pollen grains decreased in invaded patches compared with non-invaded patches; no differences were observed for S. albicaulis. The pollen of E. vulgare negatively affected the reproductive success of S. albicaulis but not that of P. secunda.

Conclusions: The presence of HP cannot be predicted from the presence of exotic plants alone, and other factors, such as flower morphology, could explain the greater HP transfer in P. secunda (actinomorphic flowers) than in S. albicaulis (zygomorphic flowers). A higher negative effect of E. vulgare pollen on P. secunda versus S. albicaulis could be related to the phylogenetic resemblance between the exotic donor and native recipient plant because pollen-stigma compatibility may be evolutionary conserved through common lineages.     

Cheilolejeunea morganii Bever. & Glenny (Lejeuneaceae,Marchantiopsida), a newly described species from lowland indigenous forest sites in New Zealand

Introduction. Cheilolejeunea morganii Bever. & Glenny, a new species of Cheilolejeunea from a lowland forest habitat in eastern Taranaki in the North Island of New Zealand, is described and illustrated.

Methods. DNA sequences were extracted from recently collected material at two locations and compared with those for species in a published phylogeny of the genus to establish the position of C. morganii. Photographic images were obtained of key features of the species for the preparation of illustrations for publication.

Key results. Cheilolejeunea morganii does not match any species described for New Zealand or Australia. The sequencing results indicate its position in the phylogeny is close to Section Paroicae. A key to the New Zealand species of Cheilolejeunea is provided.

Conclusions. In the Australasian flora, C. morganii is distinguished from other species by its combination of monoicy, pycnolejeuneoid gynoecial innovations, lobule length less than 50% lobe length and a multicellular second lobule tooth with 3–4 cells uniseriate. A case is presented for the recognition of the species as a New Zealand endemic.     

Effects of microtopography and water table on Sphagnum palustre L. in subtropical high mountains and implications for peatland restoration

Introduction. Human disturbance has recently led to increasingly serious destruction of Sphagnum L. wetlands in subtropical high mountains, resulting in an urgent need for wetland restoration.

Methods. Through a field experiment conducted in western Hubei Province, China, the effects of four different microtopographic types [concave surface, convex surface, concave and convex surface (CC surface), and flat surface] and water table depth (0 to ?30?cm) on three growth indicators (number of capitula, coverage and biomass) of Sphagnum palustre L. were examined. The objective was to identify the optimal hydrological conditions for S. palustre growth and thus facilitate its rapid recolonisation and restoration of these wetlands.

Key results. The results showed that different microtopographic conditions significantly influenced S. palustre growth. Among them, S. palustre in the CC surface showed the worst growth, while no significant differences existed among the other three microtopographic types. Additionally, as the water table increased, the growth of S. palustre increased, but long-term flooding impeded growth. The water table affected S. palustre growth via effects on its tissue water content.

Conclusions. Microtopographic reshaping was not essential for the success of S. palustre recolonisation, and microtopography that maintained the water table to within ?10?cm of the surface without flooding were best, independent of the microtopographic types. In addition, the growth patterns of S. palustre changed with changes in the environment, which may be related to its long-term adaptation to conditions of a lower water table.     

Inhibitory effects of Eucalyptus saligna leaf litter on grassland species: physical versus chemical factors

Background: In Southern Brazil, large areas of grassland have been replaced by Eucalyptus plantations. Vegetation is scarce under plantations which may be associated with Eucalyptus releasing of allelochemicals.

Aims: To investigate effects of Eucalyptus saligna leaf litter on the colonisation and development of the ground layer by grassland species and if these effects were related to allelopathy.

Methods: We assessed the effects of Eucalyptus litter on the establishment of species of the native grassland community and on seeded test species (Paspalum notatum and Lotus corniculatus – introduced). We tested the impact of the addition of E. saligna leaf litter, artificial leaves (shading and mechanical impediment) and shading. We also tested the phytotoxicity of the soil from E. saligna plantations.

Results: Species richness, diversity, plant height, cover and biomass were lower in E. saligna leaves and artificial leaves treatments than in the control (absence of litter). The test species showed lower biomass and higher mortality in treatment plots with E. saligna leaves, artificial leaves and shading treatments than in the control. Allelochemicals did not accumulate in soil at phytotoxic levels.

Conclusions: Eucalyptus saligna leaf litter suppresses the establishment of grassland vegetation, but the effects are mainly physical. Field evaluations with appropriate controls should be more extensively used in allelopathy investigations.