Planktonic diatoms and some diatom-silica relations in a shallow eutrophic Scottish loch

The species composition of planktonic diatom crops in Loch Leven, Kinross, Scotland varied considerably over the years studied (1968–71) with centric forms predominating. Dense populations were often produced and rates of increase and decrease were high. Relations with dissolved silica did not appear always to be simple; instances occurred during which both diatoms and silica were increasing or decreasing. Moreover, certain rates of increase in dissolved and frustule silica exceeded the rates at which silica flows into the loch even when the inflows appeared to be the only available dissolved silica source.     

Real-time monitoring of shake flask fermentation and off gas using triple disposable noninvasive optical sensors

Bioprocess development is a data-driven process requiring a large number of experiments to be conducted under varying conditions. Small-scale upstream bioprocess development is often performed in shake flasks because they are inexpensive and can be operated in parallel. However, shake flasks are often not equipped to accurately monitor critical process parameters such as pH, dissolved oxygen, and CO2 concentrations. Therefore, there is no definitive information on oxygen supply of growing cells, CO2 formation, and pH changes. Here we describe several shake flask fermentations where all three parameters are monitored by disposable noninvasive optical sensors. The sensitive element of these sensors is a thin, luminescent patch affixed inside the flask. Small electronic devices for excitation and fluorescence detection are positioned outside the shake flask for noninvasive monitoring. By measuring the process parameters throughout the course of the E. coli fermentations, we obtain information that is not routinely available in shake flask fermentations. For example, for cultures with only a few millimeters liquid depth, oxygen limitation can occur at relatively low agitation speeds. Under certain conditions oscillations in dissolved oxygen can occur. An increase in shaker speed and a decrease in culture volume can increase the oxygen availability and reduce the duration of oxygen limitation.     

Dissolved DNA produced through a prey-predator relationship in a species-defined aquatic microcosm

Changes in concentration of dissolved DNA was studied in a species-defined microcosm consisting of bacteria Escherichia coli, protozoa Tetrahymena thermophila and algae Euglena gracilis. A marked increase in dissolved DNA was observed when T. thermophila grazed on E. coli and grew. This meant the prey–predatory relationship between E. coli and T. thermophila was responsible for the increase of dissolved DNA. This revised version was published online in September 2006 with corrections to the Cover Date.     

Parental Responses to Changes in Costs and Benefits Along an Environmental Gradient

We evaluated the effects of dissolved oxygen on offspring survival, parental costs, and the pattern of parental care in Florida flagfish, Jordanella floridae (Cyprinodontidae). Specifically, we quantified (1) embryonic development and survival in the absence of parental care, (2) behavior of non-reproductive adults, and (3) behavior of parental males across a gradient in dissolved oxygen. Embryo developmental rates and survivorship increased with dissolved oxygen, with a relatively sharp increase in survival between medium and high oxygen treatments. Non-reproductive adults increased their frequency of aquatic surface respiration, reduced overall activity, and increased opercular beat rate as oxygen declined, suggesting increased costs of activity with reduced oxygen. Taking these cost measures together, costs appear to increase slowly as oxygen starts to decline and then increase sharply as conditions approach hypoxia. In contrast, parental effort increased gradually with dissolved oxygen. We conclude that the increase in care from low to medium oxygen primarily results from a sharp decline in physiological costs, whereas the continued increase in care from medium to high oxygen primarily results from an increase in offspring value. In addition, our results highlight that the benefits of fanning for offspring are not well understood and that they may increase with oxygen, contrary to what has been previously assumed.     

Formation of forest gaps accelerates C,N and P release from foliar litter during 4 years of decomposition in an alpine forest

High-latitude boreal and arctic surface/inland waters contain sizeable reservoirs of dissolved organic matter (DOM) and trace elements (TE), which are subject to seasonal freezing. Specifically, shallow ponds and lakes in the permafrost zone often freeze solid, which can lead to transformations in the colloidal and dissolved fractions of DOM and TE. Here, we present results from experimental freeze-thaw cycles using iron (Fe)- and DOM-rich water from thaw ponds situated in Stordalen and Storflaket palsa mires in northern Sweden. After ten cycles of freezing, 85% of Fe and 25% of dissolved organic carbon (DOC) were removed from solution in circumneutral fen water (pH 6.9) but a much smaller removal of Fe and DOC (< 7%) was found in acidic bog water (pH 3.6). This removal pattern was consistent with initial supersaturation of fen water with respect to Fe hydroxide and a lack of supersaturation with any secondary mineral phase in the bog water. There was a nearly two- to threefold increase in the low-molecular-weight (LMW) fraction of organic carbon (OC) and several TEs caused by the repeated freeze-thaw cycles. Future increases in the freeze-thaw frequency of surface waters with climate warming may remove up to 25% of DOC in circumneutral organic-rich waters. Furthermore, an increase of LMW OC may result in enhanced carbon dioxide losses from aquatic ecosystems since this fraction is potentially more susceptible to biodegradation.     

Temporal variation in river nutrient and dissolved lignin phenol concentrations and the impact of storm events on nutrient loading to Hood Canal, Washington, USA

Rapid rainfall events can be responsible for a large proportion of annual nutrient and carbon loading from a watershed. The bioavailability of organic matter during these rapid loading events increases, suggesting that storms play a relevant role in the mobilization of potentially labile terrestrial carbon. A high correlation between river discharge rates and dissolved and particulate nutrient and carbon concentrations during autumn and winter storms was observed in several temperate Pacific Northwest rivers. Dissolved and particulate lignin concentrations also increased with river discharge; for example, in October 2009 dissolved lignin concentrations increased roughly 240% with a 200% increase in river discharge. During these storms a unique phenolic composition was observed for dissolved lignin that was rapidly mobilized from surface soils relative to the base flow of dissolved lignin. The observed increase in Ad/Al ratios with discharge indicates that rapidly mobilized dissolved lignin is more degraded than the base flow of dissolved lignin. Similarly, a marked increase in C/V ratios and decrease in the S/V ratio of dissolved lignin phenols with increasing river discharge was observed. These results may indicate a difference in source between mobilized and base flow pools, or, more likely, preferential degradation and mobilization/retention of specific lignin phenols. The cumulative results from this year-long data set indicate that a shallow nutrient-rich pool of particulate and dissolved organic matter accumulates in watersheds during periods of soil-saturation deficiency (summer). Autumn and winter storms mobilize this pool of accumulated nutrients from surface soils, which is exhausted with successive winter storms.     

Particulate and dissolved phosphorus forms in freshwater: composition and analysis

In recent research, particulate and dissolved phosphorus components have been separated and characterized on the basis of their physical and chemical properties and partly by their origins.Classical operationally defined monitoring variables (dissolved reactive phosphorus, dissolved unreactive phosphorus and particulate phosphorus) are not congruent with known specific physical or chemical components of phosphorus in natural waters or with their bioavailability.Physical isolation of true particles, colloids and molecules of various sizes is possible at present although it is not recommended for routine use.Chemical characterization of particulate phosphorus is performed mainly by sediment extraction procedures (specialized for inorganic species) and — to a lesser degree — by cell extraction procedures (specialized for organic compounds). The extraction procedures are similar and physical preseparation or alternative procedures (e.g. enzymatic assays) are essential.Smaller colloids and dissolved compounds are physically separated by column chromatography and are often chemically characterized by degradation on the addition of specific enzymes.     

增温对南亚热带季风常绿阔叶林土壤有机碳及其组分的影响

全球变暖是当前全球气候变化的主要现象,影响着陆地生态系统的碳循环。森林土壤是陆地生态系统中最大的碳库,森林土壤有机碳及其不同组分的积累受到气候变暖的影响,许多研究普遍发现短期增温减少土壤有机碳及其活性碳组分,但尚不清楚这种负效应在长期增温下是否仍存在和有机碳组分是否变化。以鼎湖山季风常绿阔叶林为研究对象,采用红外辐射模拟增温,探究长期增温对南亚热带森林土壤有机碳及其组分的影响。2017—2021年的连续增温观测结果表明:与对照相比,在表层土壤中,增温处理下土壤有机碳含量显著增加4.5%,其中土壤重组有机碳库显著降低9.1%,轻组有机碳库显著增加9.8%,易氧化有机碳含量显著增加5.8%,但微生物生物量碳、可溶性有机碳、惰性有机碳和络合态碳含量不变。增温持续时间显著影响土壤有机碳、微生物生物量碳、易氧化有机碳、可溶性有机碳、轻组有机碳库、重组有机碳库、惰性有机碳和络合态碳。增温处理与增温持续时间的交互作用显著影响微生物生物量碳、易氧化有机碳和重组有机碳库,但对土壤有机碳、土壤可溶性有机碳、惰性有机碳、络合态碳和轻组有机碳库无显著影响。综上所述,长期增温背景下南亚热带季风林的土壤有机碳因土壤活性有机碳组分的增加而增加,使总有机碳增加的生物调控作用可能比矿物保护作用强,但减少的惰性碳组分和增加的活性碳组分可能会使土壤有机碳稳定性下降。本研究结果探讨了南亚热带森林表层土壤有机碳及其组分对长期增温的响应,与大多数研究所发现的短期增温使表层土壤有机碳含量减少形成对比,结果可为预测未来该地区土壤碳库的变化特征提供科学依据和理论支持。     

Ecological engineering in aquaculture: use of seaweeds for removing nutrients from intensive mariculture

Rapid scale growth of intensive mariculture systems can often lead to adverse impacts on the environment. Intensive fish and shrimp farming, being defined as throughput-based systems, have a continuous or pulse release of nutrients that adds to coastal eutrophication. As an alternative treatment solution, seaweeds can be used to clean the dissolved part of this effluent. Two examples of successfully using seaweeds as biofilters in intensive mariculture systems are discussed in this paper. The first example shows that Gracilaria co-cultivated with salmon in a tank system reached production rates as high as 48.9 kg m⁻² a⁻¹, and could remove 50% of the dissolved ammonium released by the fish in winter, increasing to 90–95% in spring. In the second example, Gracilaria cultivated on ropes near a 22-t fish cage farm, had up to 40% higher growth rate (specific growth rate of 7% d⁻¹) compared to controls. Extrapolation of the results showed that a 1 ha Gracilaria culture gave an annual harvest of 34 t (d. wt), and assimilated 6.5% of the released dissolved nitrogen. This production and assimilation was more than twice that of a Gracilaria monoculture. By integrating seaweeds with fish farming the nutrient assimilating capacity of an area increases. With increased carrying capacity it will be possible to increase salmon cage densities before risking negative environmental effects like eutrophication and toxic algal blooms sometimes associated with the release of dissolved nutrients. The potential for using mangroves and/or seaweeds as filters for wastes from intensive shrimp pond farming is also discussed. It is concluded that such techniques, based on ecological engineering, seems promising for mitigating environmental impacts from intensive mariculture; however, continued research on this type of solution is required. This revised version was published online in June 2006 with corrections to the Cover Date.     

Bioavailability of different phosphorus forms in freshwater systems

The recent literature on the bioavailability of different forms of P in freshwater systems is reviewed. Bioavailable P is defined as the sum of immediately available P and the P that can be transformed into an available form by naturally occurring processes. Methods used to estimate the bioavailable P pool, which vary between studies largely depending on the time perspective applied, are critically evaluated. Most studies on particulate P aim to determine the potentially available P pool. Potential bioavailability of particulate P is normally analysed in bioassays with algal yield determinations and the available P fraction is characterized from interpretations of results of sequential chemical extractions. NaOH-extractable P is in most studies the most algal-available P fraction. For soil samples and tributary water particulate matter, NaOH-P has often been found to be equal to algal extractable P. In other studies depletions of NaOH-P have accounted for the algal P uptake, but only a minor proportion of the fraction has been utilized. Organic P in lake water particulate matter and bed sediments of eutrophic lakes can also be algal-available to a significant extent.Studies on the bioavailability of dissolved P have often been concerned with immediate availability, or the minimum amount of available P. Such studies need other types of experimental design and normally assays with radiotracers are used. Immediately available P is frequently found to be less than P chemically assessed as dissolved reactive P (DRP) at low (< 10 µg DRP·l^-1) concentrations. However, immediate availability may also approach or exceed DRP concentrations, especially at higher concentrations. Potential bioavailability, assayed as for particulate P, may generally render higher bioavailability than P assayed as immediately available. Large fractions of dissolved P remain unutilized and are primarily found in the high molecular weight fraction of dissolved P.     

Effects of aquatic plant management on stream metabolism and oxygen balance in streams

1. In unshaded, nutrient-rich streams, prolific growth of stream macrophytes often results in flows that over-top the banks and in high primary production and respiration that may result in extreme diel variations in dissolved oxygen. Consequently, water protection authorities commonly remove macrophytes periodically.
2. We investigated the effect of plant removal on stream metabolism and oxygen balance in two Swiss streams with a high macrophyte biomass. We monitored the concentration of dissolved oxygen before and after macrophytes were removed by cutting and dredging, and calculated rates of gross primary production and ecosystem respiration by means of diel oxygen curves.
3. The removal of plants, which had reached a dry biomass of 320–420 g m−2 immediately before plant removal, had a different impact on stream metabolism in the two streams. In the first (plants removed in May), neither primary production nor ecosystem respiration were significantly affected. In the second (plants removed in late July), gross primary production and ecosystem respiration were reduced by about 70%. In this latter stream gross primary production increased in the first 2 weeks after plant removal but never recovered to pre-disturbance levels.
4. The removal of plants coincided with only a moderate increase in nocturnal oxygen concentration (+1 mg L−1). This, and the rapid partial recovery of stream metabolism in the second stream, suggests that an increase in the oxygen concentration after plant cutting is transient in unshaded, nutrient-rich streams.     

Adaptive dissolved oxygen control through the glycerol feeding in a recombinant Pichia pastoris cultivation in conditions of oxygen transfer limitation

In high cell density cultivation processes the productivity is frequently constrained by the bioreactor maximum oxygen transfer capacity. The productivity can often be increased by operating the process at low dissolved oxygen concentrations close to the limitation level. This may be accomplished with a closed-loop controller that regulates the dissolved oxygen concentration by manipulating the dominant carbon source feeding rate. In this work we study this control problem in a pilot 50l bioreactor with a high cell density recombinant P. pastoris cultivation in complex media. The study focuses on the design of accurate stable adaptive controllers, with guaranteed exponential convergence and its relation with the calibration of controller parameters. Two adaptive control strategies were tested in the pilot bioreactor: a model reference adaptive controller with a linear reference model and an integral feedback controller with adaptive gain. The latter alternative proved to be more robust to errors in the measurements of the off-gas composition. Concerning the instrumentation, algorithms were derived assuming that both the dissolved oxygen tension and off-gas composition are measured on-line, but also the case of only dissolved oxygen being measured is addressed. It was verified that the measurement of off-gas composition might not improve the controller performance due to measurement and process time delays.     

Effects of Stress from Mine Drainage on Diversity, Biomass, and Function of Primary Producers in Mountain Streams

This paper proposes a hypothesis that relates biodiversity, community biomass, and ecosystem function to a gradient of stress. According to this hypothesis, biodiversity has a low threshold of response to stress, whereas biomass and function are stable or increase under low to moderate stress and decrease only under high stress. This hypothesis was tested by examining communities of primary producers in streams under stress from mine drainage in the Rocky Mountains of Colorado, USA. Mine drainage exerts chemical stress (low pH, dissolved metals) as well as physical stress (deposition of metal oxides) on stream biota. Diversity of primary producers was usually more sensitive to stress from mine drainage than community biomass (chlorophyll a) or primary production. Diversity was negatively related to all stresses from mine drainage, but it was especially low in streams with low pH or high concentration of dissolved zinc. Biomass and production were high in streams with only chemical stress, but they were often low in streams with physical stress caused by metal oxide deposition. Stream sites with aluminum oxide deposition usually had very little algal biomass. The rate of metal oxide deposition, presence of aluminum oxides, and pH together explained 65% of the variation in biomass. The rate of net primary production was highly correlated with biomass and had a similar response to stress from mine drainage. Overall, chemical stresses (low pH, high concentration of zinc) generally led to the hypothesized trends in our model of ecosystems under stress. Physical stress (deposition of metal oxides), however, led to variable responses, and often decreased biomass and function even at low intensity, contrary to the original hypothesis. Thus, the nature of ecosystem response to stress may differ for chemical and physical stresses.     

Enhanced production of recombinant streptokinase in Escherichia coli using fed-batch culture

Fed-batch culture strategy is often used for increasing production of heterologous recombinant proteins in Escherichia coli. This study was initiated to investigate the effects of dissolved oxygen concentration (DOC), complex nitrogen sources and pH control agents on cell growth and intracellular expression of streptokinase (SK) in recombinant E. coli BL21(DE3). Increase in DOC set point from 30% to 50% did not affect SK expression in batch culture where as similar increase in fed-batch cultivation led to a significant improvement in SK expression (from 188 to 720 mg l⁻¹). This increase in SK could be correlated with increase in plasmid segregational stability. Supplementation of production medium with yeast extract and tryptone and replacement of liquid ammonia with NaOH as pH control agent further enhanced SK expression without affecting cell growth. Overall, SK concentration of 1120 mg l⁻¹ representing 14-fold increase in SK production on process scale-up from flask to bioreactor scale fed-batch culture is the highest reported concentration of SK to date.     

Desorptive behavior of phosphate in the subtropical Miyara River, Ishigaki Island, Japan

The desorption of phosphate-phosphorus (PO₄) from riverine particles with a salinity increase in Miyara River water, Ishigaki Island, Japan, was examined in laboratory experiments involving mixing of unfiltered riverine water with coastal seawater filtered through a 0.4-μm Nuclepore filter and the addition of sodium chloride (NaCl) into unfiltered riverine water. The mixing experiment yielded a convex pattern in the dissolved PO₄–salinity plot, and the dissolved riverine PO₄ concentration increased with the NaCl addition. These results suggested PO₄ desorption from riverine particles with a salinity increase. The pattern of desorption could vary according to the sample conditions, such as the concentrations of dissolved PO₄ and suspended solids. However, the obtained results seemed to simulate the convex distribution pattern in the dissolved PO₄–salinity plot observed at the mouth of the Miyara River in general.     

Water column oxygen demand and sediment oxygen flux: patterns of oxygen depletion in tidal creeks

Low dissolved oxygen (DO) levels often occur during summer in tidal creeks along the southeastern coast of the USA. We analyzed rates of oxygen loss as water-column biochemical oxygen demand (BOD₅) and sediment oxygen flux (SOF) at selected tidal creek sites monthly over a 1-year period. Ancillary physical, chemical and biological data were collected to identify factors related to oxygen loss. BOD₅ rates ranged from 0.0 mg l^?1 to 7.6 mg l^?1 and were correlated positively with organic suspended solids, total suspended solids, chlorophyll a concentrations, temperature, and dissolved oxygen, and negatively with pH and nitrate + nitrite. SOF rates ranged from 0.0 to 9.3 g O₂ m^?2 d^?1, and were positively correlated with temperature, chlorophyll a, and total suspended solids, but negatively with dissolved oxygen. Both forms of oxygen uptake were seasonally dependent, with BOD₅ elevated in spring and summer and SOF elevated in summer and fall. Average oxygen loss to sediments was greater and more variable than oxygen loss in the water column. Oxygen deficits at three of five locations were significantly related to BOD₅ and SOF, but not at two sites where ground water discharges were observed. Correlation and principal component analyses suggested that BOD₅ and SOF responded to somewhat different suites of environmental variables. BOD₅ was driven by a set of parameters linked to warm season storm water inputs that stimulated organic seston loads, especially chlorophyll a, while SOF behaved less strongly so. Runoff processes that increase loads of organic material and nutrients and ground water discharges low in dissolved oxygen contribute to occurrences of low dissolved oxygen in tidal creeks.     

Distributions of pH and chemical components in Mizorogaike, a pond with a floating-mat bog

Distribution patterns of pH and concentrations of chemical components were studied in Mizorogaike, a pond with a floating-mat bog, which is naturally acidified by the Sphagnum community. Considering the distribution of pH, sampling sites were selected on the floating mat (two sites), beneath the floating mat (one site), in the open water around the floating mat (two sites), and at the mouths of inflows (two sites). Monthly observations from April 1994 through March 1995 revealed that the distribution patterns of chemical components could be classified into three groups according to their pH dependence: (1) concentrations of dissolved organic carbon, organic phosphorus, aluminum, iron, and manganese increase with decrease in pH; (2) concentrations of dissolved orthophosphate and silicon increase with increase in pH; (3) concentrations of suspended particulate aluminum, iron, manganese, phosphorus, and silicon do not depend on the pH. Thus in Mizorogaike, the distribution of dissolved components depends on the pH.     

Effect of dissolved oxygen control on growth and antibiotic production in Streptomyces clavuligerus fermentations.

A proportional-integral control system was used to control dissolved oxygen in a fermentor at constant shear and mass transfer conditions. Growth and antibiotic production in Streptomyces clavuligerus were studied at different dissolved oxygen levels during the fermentation. Three protocols were employed: no-oxygen control to provide a base case, oxygen controlled to a preset saturation level throughout the fermentation, and oxygen controlled at a high level only during the growth phase. The last protocol was aimed at optimizing the consumption of oxygen. Lower specific growth rates and cephamycin C yields were obtained when dissolved oxygen was controlled at 50% throughout the fermentation, compared to the base case. A 2.4-fold increase in the final cephamycin yield was observed when dissolved oxygen was controlled at saturation levels during the growth phase, compared to the experiments without dissolved oxygen control. This enhancement in yield was independent of the dissolved oxygen (DO) level after exponential growth, in the range of 50-100% saturation. The most effective control strategy, therefore, was to control DO only during active growth when the biosynthetic enzymes were probably synthesized.     

Radioprotective efficacy of chitosan, dissolved in aqueous extract of Abies Sibirica

In experiments on rats it has been shown, that radioprotective efficacy of water-soluble low-molecular chitosan (MM 23 kDa) used in a dose 5 mg/kg (per os 5 ml/kg, daily ten-day treatment after whole-body irradiation with LD90/30) is higher, when it is dissolved in Abisib (aqueous extract of Abies Sibirica fir-needles) in comparison with chitosan dissolved in distilled water. Survival rate and average life significantly increase. Radioprotective efficacy of water-soluble low-molecular chitosan in a dose 5 mg/kg dissolved in distilled water or in Abisib (Chitabis) has been estimated. In comparison with control rats exposed to LD90/30, Chitabis administration (per os 5 ml/kg, daily ten-day treatment) leads to increase of average life from 15.44 +/- 2.31 to 28.37 +/- 3.09 days and of survival rate from 9.75 +/- 7.75% to 34.0 +/- 3.6%.