Phenotypic plasticity in the Antarctic fish <Emphasis Type="Italic">Trematomus newnesi</Emphasis> (Nototheniidae) from the South Shetland Islands

The presence of the two morphs, “typical” and “large mouth”, in the Antarctic fish species Trematomus newnesi (Perciformes, Notothenioidei) was recorded for the first time in nearshore waters of the South Shetland Islands (Potter Cove) and western Antarctic Peninsula (Petermann Island). The two morphs were distinguishable in specimens of 60–241 mm total length (TL); about 30% of the specimens constituted intermediate forms. In addition to the previously known characters separating the morphs, we found that the “relative size of the eye” can also be used to identify smaller and larger fish of the typical morph. The ecological significance of the two morphs remains unclear. Ratios of diagnostic characters for identification of the species at two size ranges (60–131 and 132–241 mm TL) are provided.     

Genetic variation among populations of the endangered fan mussel <Emphasis Type="Italic">Pinna nobilis</Emphasis> (Mollusca: Bivalvia) along the Tunisian coastline

The Mediterranean fan mussel Pinna nobilis is an endangered invertebrate due to overexploitation and habitat deterioration. In this species, two distinctive morphs, the “combed” and “straight and wide” forms, have been recorded and it is not known whether this morphometric variability is attributed to genetic or environmental factors. In this study, we used mitochondrial COI sequences to describe the genetic variability of five Pinna nobilis populations sampled along the northern, eastern, and southern Tunisian coastline, and to examine whether there is a genetic differentiation between the two forms of this species. DNA sequences of 675 bp from the mitochondrial COI gene have revealed 10 different haplotypes among 49 examined specimens. Haplotype diversity was high, ranging between 0.40441 and 0.80952, and showed a decreasing North-East gradient, which seems to be explained by the hydrogeography of the study area. The mitochondrial COI marker did not suggest a genetic distinctiveness between the two Pinna nobilis shell forms, “combed” and “straight and wide”. Although the morphometric plasticity of the fan mussel could be due to the influence of environmental factors, further genetic studies using nuclear markers are envisaged to investigate whether this differentiation is associated to gene flow restrictions.     

Genetic differentiation between two color morphs of <Emphasis Type="Italic">Apogon taeniophorus</Emphasis> from southern Japan

The anterior half of the mitochondrial 16S rRNA gene (ca. 610bp) was compared for two color morphs (spotted and lined types) of a dark-striped cardinalfish, previously identified as Apogon taeniophorus. Phylogenetic analyses using maximum-parsimony (MP) and neighbor-joining (NJ) methods, with haplotypes of A. cookii as an outgroup, showed that the haplotypes of each color-morph were reciprocally monophyletic with 100% bootstrap values. In addition, the degree of sequence difference between the two morphs was comparable to that existing between the other clearly distinct congeneric species. These results, together with the differences in coloration and overlapped geographical ranges, indicated that the two color morphs of A. taeniophorus represent two distinct species.     

Spectral Diversity of Fluorescent Proteins from the Anthozoan <Emphasis Type="Italic">Corynactis californica</Emphasis>

Color morphs of the temperate, nonsymbiotic corallimorpharian Corynactis californica show variation in pigment pattern and coloring. We collected seven distinct color morphs of C. californica from subtidal locations in Monterey Bay, California, and found that tissue– and color–morph-specific expression of at least six different genes is responsible for this variation. Each morph contains at least three to four distinct genetic loci that code for these colors, and one morph contains at least five loci. These genes encode a subfamily of new GFP-like proteins, which fluoresce across the visible spectrum from green to red, while sharing between 75% to 89% pairwise amino-acid identity. Biophysical characterization reveals interesting spectral properties, including a bright yellow protein, an orange protein, and a red protein exhibiting a “fluorescent timer” phenotype. Phylogenetic analysis indicates that the FP genes from this species evolved together but that diversification of anthozoan fluorescent proteins has taken place outside of phylogenetic constraints, especially within the Corallimorpharia. The discovery of more examples of fluorescent proteins in a non-bioluminescent, nonsymbiotic anthozoan highlights possibilities of adaptive ecological significance unrelated to light regulation for algal symbionts. The patterns and colors of fluorescent proteins in C. californica and similar species may hold meaning for organisms that possess the visual pigments to distinguish them. Christine E. Schnitzler and Robert J. Keenan contributed equally to this work. Data deposition footnote: The GenBank () accession numbers for the genes and gene products discussed in this paper are: ccalRFP1 (AY823226); ccalYFP1 (AY823227); ccalRFP2 (DQ065851); ccalGFP1 (DQ065852); ccalOFP1 (DQ065853); ccalGFP3 (DQ899732)     

Variation of coloration in <Emphasis Type="Italic">Lycodes yamatoi</Emphasis> Toyoshima, 1985 (Pisces: Zoarcidae) in the northern Sea of Japan

Specimens of eelpouts were found in the northern Sea of Japan that were externally similar to Lycodes yamatoi Toyoshima, 1985, but their coloration differed from the coloring known for this species. Comparative analysis of meristic characters and sequence comparison of mtDNA COI and cytb gene fragments did not reveal distinctions between specimens with different types of coloration. All studied specimens belong to L. yamatoi. The live color pattern of L. yamatoi is characterized by high variation, with two main types of coloration, “dark” and “bright.”     

Genetic and morphological variation of Saxifraga caespitose L. from Spitsbergen (Svalbard): a preliminary study

Saxifraga caespitose is a taxonomically difficult and poorly studied circumpolar arctic–alpine species. Two different phenotypes with distinct growth habits were collected at two shared localities in Spitsbergen. The natural genetic variation of both phenotypes was tested by AFLPs in order to investigate whether the differences at the phenothypical level are reflected at the genetic level. Low level of molecular variability between “tall” and “short” plants may suggest that the morphological variation could be due to phenotypic plasticity rather than genetic background.     

Systematics and genetic variation in commercial shape Kappaphycus and shape Eucheuma (Solieriaceae, Rhodophyta)

The systematics and taxonomy of Kappaphycus and Eucheuma (Solieriaceae) is confused and difficult due to morphological plasticity, lack of adequate characters to identify species and commercial names of convenience. These taxa are geographically widely dispersed through cultivation. Commercial, wild and herbarium sources were analysed; molecular markers provided insights into taxonomy and genetic variation, and where sources of genetic variation may be located. The mitochondrial cox2-3 and plastidal RuBisCo spacers were sequenced. There is a clear genetic distinction between K. alvarezii (“cottonii”) and K. striatum (“sacol”) samples. Kappaphycus alvarezii from Hawaii and some samples from Africa are also genetically distinct. Our data also show that all currently cultivated K. alvarezii from all over the world have a similar mitochondrial haplotype. Within Eucheuma denticulatum (“spinosum”) most African samples are again genetically distinct. Our data also suggest that currently cultivated E. denticulatum may have been “domesticated” several times, whereas this is not evident for the cultivated K. alvarezii. The present markers used do not distinguish all the morpho-types known in cultivation (e.g. var. tambalang, “giant” type) but do suggest that these markers may be useful to assess introductions and species identification in samples.     

Sexes,species, and genomes: why males and females are not like humans and chimpanzees

This paper describes, analyzes, and critiques the construction of separate “male” and “female” genomes in current human genome research. Comparative genomic work on human sex differences conceives of the sexes as like different species, with different genomes. I argue that this construct is empirically unsound, distortive to research, and ethically questionable. I propose a conceptual model of biological sex that clarifies the distinction between species and sexes as genetic classes. The dynamic interdependence of the sexes makes them “dyadic kinds” that are not like species, which are “individual kinds.” The concept of sex as a “dyadic kind” may be fruitful as a remedy to the tendency to conceive of the sexes as distinct, binary classes in biological research on sex more generally.     

Intraspecific variation of flower colour and its distribution within a sea lavender, Limonium wrightii (Plumbaginaceae), in the northwestern Pacific Islands

Differentiation of flower colour is thought to be one of the most important factors promoting plant speciation. We describe the intraspecific variation of flower colour and its distribution in Limonium wrightii. We conducted a survey on 36 islands in the northwestern Pacific and discriminated six morphs of flower colour variation. Two flower colour morphs, pink and yellow, were most frequently observed, and their geographical distributions were basically allopatric. These two morphs were in contact in a narrow zone on Okinoerabu Island, located in the middle region of the Ryukyu Archipelago. In addition, orange, white, and ivory flower morphs were also found in this zone. The geographical distribution of pink and yellow morphs showed a “leapfrog” pattern; the distribution of pink flowers was divided into two areas, intercalated by the distribution of the yellow flower morph. The orange morph may have resulted from hybridization between the pink and yellow flower morphs.     

Genetic diversity of isolated populations of Nautilus pompilius (Mollusca, Cephalopoda) in the Great Barrier Reef and Coral Sea

Nautilus species are the only remaining cephalopods with an external shell. Targeted heavily by the shell trade across their distribution area, these species have a poorly known population structure and genetics. Molecular techniques have been used to assess levels of inter- and intra-population genetic diversity in isolated populations of Nautilus in the northern sections of the Great Barrier Reef (GBR), Australia and in the Coral Sea. Distinct populations, physically separated by depths in excess of 1,000 m were examined. RAPD analysis of genetic differences showed limited differentiation of the “Northern GBR” populations and the “Coral Sea” populations. Discrimination between the two geographic groups was observed from these data. In addition, partial sequencing of the CoxI gene region, yielded 575 bp of sequence, which was aligned for 43 samples and phylogenetic trees constructed to examine genetic relationships. Two distinct clades were resolved in the resulting trees, representing the “Northern GBR” and “Coral Sea” population groups. Inter- and intra-population relationships are presented and discussed. The differentiation of the Nautilus populations from the Northern section of the Great Barrier Reef and those from the Coral Sea were supported by two distinctly different methodologies and the significance of this separation and the potential evolutionary divergence of these two population groups is discussed.     

Relationships among three Japanese <Emphasis Type="Italic">Laetiporus</Emphasis> taxa based on phylogenetic analysis and incompatibility tests

Relationships among three Japanese Laetiporus taxa (“L. sulphureus var. sulphureus” auct. jap., L. sulphureus var. miniatus, and L. versisporus) were assessed with phylogenetic analysis and incompatibility tests. Gene phylogenies inferred from the internal transcribed spacer region of nuclear ribosomal DNA, elongation factor 1α, and β-tubulin gene regions suggested that Japanese Laetiporus was divided into four groups: the yellow pore form of L. sulphureus var. miniatus, the white pore form of L. sulphureus var. miniatus, and two “L. sulphureus var. sulphureus”/ L. versisporus groups. A morphologically distinct species, Laetiporus versisporus, sharing a clade with “L. sulphureus var. sulphureus” auct. jap., was proved to be an anamorphic form of “L. sulphureus var. sulphureus” auct. jap. The “sulphureus/versisporus” isolates showed two divergent sequence types in each region. Some isolates had intraindividual polymorphism assigned to both sequence types. This finding suggests that speciation via hybridization is ongoing in the “sulphureus/versisporus” group. Single spore isolates from the “sulphureus/versisporus” group, white pore group, and yellow pore group were incompatible with each other. Our results provided strong support for the new recognition of three Laetiporus taxa in Japan.     

The role of vision and color in the close proximity foraging behavior of four coccinellid species

The role of vision and color in close-proximity foraging behavior was investigated for four species of lady beetles: Coccinella septempunctata, Hippodamia convergens, Harmonia axyridis, and Coleomegilla maculata. The effect of light level and color cues on consumption rates varied among the four predator species. The consumption rates of these predators on the pea aphid Acyrthosiphon pisum (Harris) was measured under light and dark conditions. C. septempunctata,H. convergens, and Ha. axyridis consumed significantly more aphids in the light than in the dark, while the consumption rate of Col. maculata was not affected by light level. Foraging ability was also measured on red and green color morphs of the pea aphid on red, green, and white backgrounds. C. septempunctata consumed significantly more of the aphid morph that contrasted with the background color, and showed no difference between morphs on the white background. H. axyridis consumed significantly more red morph aphids regardless of background. The remaining two species showed no difference in consumption rates on the two color morphs. The variation in the use of visual cues demonstrates how different species of predators can exhibit different foraging behaviors when searching for the same prey. Received: 4 August 1997 / Accepted: 3 February 1998     

Mating behavior of the rock catfish, Silurus lithophilus

The mating behavior of the rock catfish Silurus lithophilus (Siluriformes: Siluridae), a species endemic to the Lake Biwa system, was observed from May to July in 1989–1994 along the rocky shore of the lake's outlet, the Seta River. The mating behavior of S. lithophilus involved a certain behavioral sequence: “chasing,”“clinging,” and “enfolding” while “squeezing” by the male; and “circling” by the spawned pair. The mating behavior of this species was basically similar to that of S. biwaensis, but greatly different from that of S. asotus, which spawns in running water (in ditches). The mating behavior of S. lithophilus (and S. biwaensis) might have developed as an adaptation to lentic environments such as the shores of the large river or the lake. Received: October 25, 2000 / Revised: February 25, 2001 / Accepted: March 8, 2001     

An Assessment of the Impact of Chromium-Amended Sediment on a Marine Nematode Assemblage Using Microcosm Bioassays

Microcosms were used to assess the impact of chromium on free-living marine nematodes. Nematodes were exposed to three chromium concentrations (500 ppm (dm, dry mass), 800 ppm (dm) and 1,300 ppm (dm)), and effects were examined after 4 weeks. Results showed significant differences between univariate measures of control nematodes and those from medium- and high-chromium microcosms. Most, decreased significantly with increasing level of chromium contamination. The medium-chromium treatment seems to be the minimal concentration that could has a negative effect on nematodes. Results from multivariate analyses demonstrated that responses of nematode species to chromium treatments were varied: Leptonemella aphanothecae was eliminated at all doses tested and seemed to be intolerant species to chromium; Daptonema normandicum and Sabatieria longisetosa which significantly increased at 500 ppm chromium (dm) appeared to be “opportunistic” species at this dose whereas the two Bathylaimus species (Bathylaimus capacosus and Bathylaimus tenuicaudatus) which increased at all the doses tested seemed to be “chromium resistant”. As we think such “opportunistic” and “resistant” species could be used as sensitive indicators of unsafe marine food. The use of microcosms has allowed the effects of the chromium on nematodes to be assessed individually, which was not possible in the field.     

Polymorphism of canonical and noncanonical <Emphasis Type="Italic">gypsy</Emphasis> sequences in different species of <Emphasis Type="Italic">Drosophila </Emphasis><Emphasis Type="Italic">melanogaster</Emphasis> subgroup: possible evolutionary relations

Mobile genetic elements constitute a substantial part of eukaryotic genome and play an important role in its organization and functioning. Co-evolution of retrotransposons and their hosts resulted in the establishment of control systems employing mechanisms of RNA interference that seem to be impossible to evade. However, “active” copies of endogenous retrovirus gypsy escape cellular control in some cases, while its evolutionary elder “inactive” variants do not. To clarify the evolutionary relationship between “active” and “inactive” gypsy we combined two approaches: the analysis of gypsy sequences, isolated from G32 Drosophila melanogaster strain and from different Drosophila species of the melanogaster subgroup, as well as the study of databases, available on the Internet. No signs of “intermediate” (between “active” and “inactive”) gypsy form were found in GenBank, and four full-size G32 gypsy copies demonstrated a convergence that presumably involves gene conversion. No “active” gypsy were revealed among PCR generated gypsy ORF3 sequences from the various Drosophila species indicating that “active” gypsy appeared in some population of D. melanogaster and then started to spread out. Analysis of sequences flanking gypsy variants in G32 revealed their predominantly heterochromatic location. Discrepancy between the structure of actual gypsy sites in G32 and corresponding sequences in database might indicate significant inter-strain heterochromatin diversity. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Comparative androecium morphogenesis ofSicyos angulatus andSechium edule (Cucurbitaceae)

“Androecium” ofSicyos angulatus andSechium edule is unique in having a solid central column below a head portion with thecae. Its morphogenesis was examined for the two species. The developmental course is composed of two distinct successive phases; (1) establishment of stamen primordia and (2) uplift of the stamen primordia caused by development of a central column below them. In the first phase, there is a difference between the two species; inSicyos angulatus, two bithecal and one monothecal stamen primordia are formed by congenital fusion among preformed five protrsions, whilst inSechium edule, three or four monothecal stamen primordia are formed without fusion. The central column is later produced by intercalary growth in a region below the stamen primordia in both species. Concomitant with central column development, the center of the floral primordium, which was surrounded by the early formed stamen primordia, is raised up to the top of the central column. The central column could be interpreted as a receptacular column, and not as congenitally fused stamen filaments, as currently believed. The “androecium” of the both species is considered an androecium complex, which consists of the stamens and a receptacular column.     

Territoriality in the Malaysian giant ant Camponotus gigas (Hymenoptera/Formicidae)

In a 5-ha area of primary lowland rain forest in Borneo, we observed four polydomous colonies of the night-active giant ant Camponotus gigas. The nonoverlapping, three-dimensional territories in the canopy had a ground size up to 0.8 ha. C. gigas showed a distinct territorial behavior: (1) specific “barrack” nests, especially containing many majors, were situated at the borders and were established during long-term territorial conflicts; (2) trunk trails were regularly patrolled by majors that attacked alien conspecifics and some other ant species violently; and (3) sentinels, often involved in long-enduring conflicts with neighboring ant colonies, defended the borders at bridgeheads. Interspecific conflicts with sympatric Camponotus species always led to violent, “bloody” fights of all castes. Intraspecific conflicts, however, were solved by ritual fights (“front leg boxing”) of majors. C. gigas performed a de-escalation strategy to end short periods of true intraspecific “ant war” that we provoked experimentally. Artificially induced ritualized combats continued over weeks also in the absence of baits, indicating that borders may become established by long-term conflicts of attrition. We discuss the differences between ritual fights in desert and rain-forest ants and apply Lanchester's theory of battles to our findings. Received: October 17, 2000 / Accepted: May 14, 2001