A comparison of video and point intercept transect methods for monitoring subtropical coral communities

This study evaluated the use of video transects obtained from SCUBA divers or remote operated vehicle (ROV) and point intercept transect (PIT) method from divers for monitoring subtropical coral communities. Comparisons were made between the datasets obtained by the ROV and SCUBA diver video transect (‘Diver’) and the PIT method on three nearby coral sites with different hydrographies, scleractinian coral composition, dominant species and percentage cover. There was no significant difference between the ROV and ‘Diver’ datasets whereas the PIT method tended to over-estimate percentage cover at sites where corals are not extensive. Power analysis showed that the minimum detectable change in coral percentage cover, δ, had low mean values between 0.39% and 1.65% for the ROV dataset, 0.66% for the “Diver’ dataset, and 12.11% for the PIT dataset. This implied that the ROV and SCUBA survey methods can produce higher precision in terms of detecting temporal changes in coral communities and are thus more suitable for scientific research and management purposes than the PIT method. Other advantages of using video transects by SCUBA divers or ROV include provision of permanent records for subsequent studies and public information, less field time incurred and wider survey areas.     

Functional versatility supports coral reef biodiversity

We explore the role of specialization in supporting species coexistence in high-diversity ecosystems. Using a novel ordination-based method to quantify specialist and generalist feeding structures and diets we examined the relationship between morphology and diet in 120 wrasses and parrotfishes from the Great Barrier Reef. We find that wrasses, despite their morphological diversity, exhibit weak links between morphology and diet and that specialist morphologies do not necessarily equate to specialized diets. The dominant pattern shows extensive overlap in morphology (functional morphospace occupation) among trophic groups; fish with a given morphology may have a number of feeding modes. Such trophic versatility may lay the foundation for both the origins and maintenance of high biodiversity on coral reefs.     

Improving biodiversity monitoring

Effective biodiversity monitoring is critical to evaluate, learn from, and ultimately improve conservation practice. Well conceived, designed and implemented monitoring of biodiversity should: (i) deliver information on trends in key aspects of biodiversity (e.g. population changes); (ii) provide early warning of problems that might otherwise be difficult or expensive to reverse; (iii) generate quantifiable evidence of conservation successes (e.g. species recovery following management) and conservation failures; (iv) highlight ways to make management more effective; and (v) provide information on return on conservation investment. The importance of effective biodiversity monitoring is widely recognized (e.g. Australian Biodiversity Strategy). Yet, while everyone thinks biodiversity monitoring is a good idea, this has not translated into a culture of sound biodiversity monitoring, or widespread use of monitoring data. We identify four barriers to more effective biodiversity monitoring in Australia. These are: (i) many conservation programmes have poorly articulated or vague objectives against which it is difficult to measure progress contributing to design and implementation problems; (ii) the case for long‐term and sustained biodiversity monitoring is often poorly developed and/or articulated; (iii) there is often a lack of appropriate institutional support, co‐ordination, and targeted funding for biodiversity monitoring; and (iv) there is often a lack of appropriate standards to guide monitoring activities and make data available from these programmes. To deal with these issues, we suggest that policy makers, resource managers and scientists better and more explicitly articulate the objectives of biodiversity monitoring and better demonstrate the case for greater investments in biodiversitymonitoring. There is an urgent need for improved institutional support for biodiversity monitoring in Australia, for improved monitoring standards, and for improved archiving of, and access to, monitoring data. We suggest that more strategic financial, institutional and intellectual investments in monitoring will lead to more efficient use of the resources available for biodiversity conservation and ultimately better conservation outcomes.     

Measured coral luminescence as a freshwater proxy: comparison with visual indices and a potential age artefact

Illuminating slices from massive coral skeletons under ultraviolet light can reveal bright luminescent lines in nearshore corals affected by freshwater river flows. The occurrence and intensity of these lines in long-lived corals can then be used to reconstruct past river flow and rainfall, extending the instrumental records of past tropical climate variability considerably. Earlier studies from the Great Barrier Reef, Australia, have used visual assessments of luminescent line intensity to develop semi-quantitative (though potentially subjective) indices of spatial and temporal variations in freshwater flows. Annual visual assessments and relative coral luminescence intensity (measured by fluorescence spectroscopy) and growth variables are first compared for 89 Porites coral colonies from 30 reefs throughout the length and breadth of the GBR. This demonstrates that simple visual assessments can provide useful information, in the absence of quantitative measurements, of this proxy freshwater tracer. The annual range of measured luminescence between the preceding winter minimum and summer maximum, rather than annual average or annual maximum luminescence is shown to be the most robust measure of freshwater flow. Second, from analyses of the coral colony data and over 40-century-long or longer coral core records, attention is drawn to a potential age artefact in annual average and annual maximum measured coral luminescence. These variables show a significant decline through time, similar to the observed decline in average skeletal density. Although the reasons for this decline are unknown, it could compromise interpretation of long-term variations in freshwater flows and subsequent climatic inferences. This artefact does not appear to affect the annual luminescence range which, it is concluded, is a robust proxy for inter-annual variations in river flow and rainfall.     

珊瑚礁区的生物多样性及其生态功能

珊瑚礁区生物多样性程度可以与陆地热带雨林相提并论,目前关于珊瑚礁物种多样性及其空间分布特征方面研究进展迅速,是生物多样性研究的重要基地。作为一种生态资源,珊瑚礁还具有重要的生态功能,近年来由于全球气候逐渐变暖、人类活动影响不断加剧,导致其生物多样性缩减、生态功能严重退化。珊瑚礁生态系统多样性、遗传多样性已成为珊瑚礁研究热点,珊瑚礁生态环境效应和保护管理方面的研究也越来越受到重视。我国珊瑚礁主要分布在广阔的南海海域和海南岛、台湾岛、香港和广东广西沿岸,礁区生物种类繁多,多样性程度较高,以往研究主要涉及地质、地貌、生物、环境等方面,现今和今后一段时间里迫切需要加强生物多样性和生态功能研究,以确保更有效地保护和管理珊瑚礁。     

Avian biodiversity monitoring in Australian rangelands

Abstract Birds have been widely regarded as a key element in monitoring biodiversity both in Australia and elsewhere. We believe that, although birds are unlikely to be an umbrella or indicator taxon for other biota (other vertebrates, invertebrates, plants, microorganisms), they do represent a taxon that can be monitored more easily and with less effort per datum than other biotic components. It has been shown by the great participation rate of lay observers (whom we call monitors) in several schemes (notably the Birds Australia Atlas programs) that there is a capacity to mobilize the public to undertake bird surveying. Although there are many limitations to acquiring high‐quality information (scale, dynamism, mobility, irruptiveness, paucity of monitors over much of the rangelands), we think that these can be dealt with to allow the use of birds as a key component of biodiversity monitoring. We outline some of the possible options for statistically characterizing monitoring data for rangeland birds.     

SedPods: a low-cost coral proxy for measuring net sedimentation

Sediment derived from impaired watersheds is a major stressor to adjacent coral reefs globally. To better understand stresses generated by specific processes and events, many coral reef scientists seek to collect physical samples of settling particles and obtain reproducible information about net rates of sediment accumulation on coral reefs. Yet, the tools most commonly used to gather this information, sediment tube traps, only provide information on the gross accumulation of sediment at a site, in that all particles are effectively trapped within the container, unlike what a coral surface experiences. To address the need for an improved measurement of net particle accumulation on coral surfaces, we propose using recoverable sediment pods (SedPods) that can be constructed from readily available materials for under US $20. These devices are inexpensive, easy to fabricate, and allow for capture of particles over a given time span. The particles can then be used for laboratory analysis and accurate calculation of net accumulation rates on a coral surface proxy. In an experiment in Hanalei Bay, HI, we found that net sediment accumulation on rectangular SedPods was an order of magnitude less than gross accumulation in nearby conventional tube traps.     

Environmental and geometric constraints on Indo-Pacific coral reef biodiversity

The Indo-Australian Archipelago supports the world's richest coral reef biodiversity hotspot. Traditional hypotheses that account for such exceptional biodiversity have highlighted the importance of environmental variables such as habitat area and energy input. Recently, however, an additional explanation has been proposed based on geometric constraints in the placement of geographical ranges within a bounded domain, which cause a mid-domain peak in species richness; the mid-domain effect (MDE). Here, for the first time, we examine the relative importance of area, energy and MDE jointly on species richness patterns. Model selection indicates that the best model incorporates MDE and reef area, but no energy effect; moreover, this best-fit model captures all major features of reef fish and coral species richness patterns. Habitat area is the major environmental factor influencing species richness. The prevention of further fragmentation and loss of habitat area is of critical importance for the conservation of coral reef biodiversity.     

Scientific contributions of extensive biodiversity monitoring

To develop a complete and informative biodiversity observation system, it is necessary to compare the strengths and limits of various monitoring schemes. In this article, we examine the various advantages of extensively monitoring fine-grained spatial variations of biodiversity, where the prominent traits of many species within a community (abundance, phenology, etc.) are regularly recorded at numerous sites over a large territory, usually via human observation networks. Linking these variations with environmental factors sheds lights on the major mechanisms leading to changes in biodiversity, thus increasing our knowledge of macroecology and community ecology. This extensive monitoring allows us to assess diffuse effects, contributing to the sound use of the precautionary principle. Combined with site-focused monitoring, information gathered from extensive monitoring provides the raw material necessary to build biodiversity scenarios.     

Forecasted coral reef decline in marine biodiversity hotspots under climate change

Coral bleaching events threaten coral reef habitats globally and cause severe declines of local biodiversity and productivity. Related to high sea surface temperatures (SST), bleaching events are expected to increase as a consequence of future global warming. However, response to climate change is still uncertain as future low‐latitude climatic conditions have no present‐day analogue. Sea surface temperatures during the Eocene epoch were warmer than forecasted changes for the coming century, and distributions of corals during the Eocene may help to inform models forecasting the future of coral reefs. We coupled contemporary and Eocene coral occurrences with information on their respective climatic conditions to model the thermal niche of coral reefs and its potential response to projected climate change. We found that under the RCP8.5 climate change scenario, the global suitability for coral reefs may increase up to 16% by 2100, mostly due to improved suitability of higher latitudes. In contrast, in its current range, coral reef suitability may decrease up to 46% by 2100. Reduction in thermal suitability will be most severe in biodiversity hotspots, especially in the Indo‐Australian Archipelago. Our results suggest that many contemporary hotspots for coral reefs, including those that have been refugia in the past, spatially mismatch with future suitable areas for coral reefs posing challenges to conservation actions under climate change.     

施氮时期对高产夏玉米氮代谢关键酶活性及抗氧化特性的影响

选用玉米品种登海661和郑单958为材料,研究了高产条件下施氮时期对夏玉米产量、氮素利用率、氮代谢相关酶及抗氧化酶活性的影响.结果表明： 拔节期一次性施氮不利于夏玉米产量提高和氮素积累,分次施氮且增施花粒肥显著提高了植株和籽粒的吸氮量,并提高了籽粒产量.拔节期、10叶期、花后10 d按2∶4∶4施氮,登海661产量最高可达14123.0 kg·hm^-2;基肥、拔节期、10叶期、花后10 d按1∶2∶5∶2施氮,郑单958产量最高可达14517.1 kg·hm^-2,这2种施氮方式较拔节期一次性施氮分别增产14.5%和17.5%.花前分次施氮可以显著提高开花期硝酸还原酶活性;登海661和郑单958在花后0~42 d中,施氮处理的谷氨酰胺合成酶、谷氨酸合成酶、谷氨酸脱氢酶活性分别平均提高了32.6%、47.1%、50.4%和145%、61.8%、25.6%,减缓了其下降趋势;超氧化物歧化酶、过氧化氢酶活性提高了22.0%、36.6%和13.4%、62.0%,丙二醛含量显著降低.在高产条件下,分次施氮且适当增加花粒肥施入比例可以提高氮代谢相关酶活性,延缓植株衰老,促进氮素吸收利用,进而提高籽粒产量.     

Reefs of tomorrow: eutrophication reduces coral biodiversity in an urbanized seascape

Although the impacts of nutrient pollution on coral reefs are well known, surprisingly, no statistical relationships have ever been established between water quality parameters, coral biodiversity and coral cover. Hong Kong provides a unique opportunity to assess this relationship. Here, coastal waters have been monitored monthly since 1986, at 76 stations, providing a highly spatially resolved water quality dataset including 68 903 data points. Moreover, a robust coral species richness (S) dataset is available from more than 100 surveyed locations, composed of 3453 individual colonies' observations, as well as a coral cover (CC) dataset including 85 sites. This wealth of data provides a unique opportunity to test the hypothesis that water quality, and in particular nutrients, drives coral biodiversity. The influence of water quality on S and CC was analyzed using GIS and multiple regression modeling. Eutrophication (as chlorophyll‐a concentration; CHLA) was negatively correlated with S and CC, whereas physicochemical parameters (DO and salinity) had no significant effect. The modeling further illustrated that particulate suspended matter, dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphorus (DIP) had a negative effect on S and on CC; however, the effect of nutrients was 1.5‐fold to twofold greater. The highest S and CC occurred where CHLA <2 μg L^?1, DIN < 2 μm and DIP < 0.1 μm . Where these values were exceeded, S and CC were significantly lower and no live corals were observed where CHLA > 15 μg L^?1, DIN > 9 μm and DIP > 0.33 μm . This study demonstrates the importance of nutrients over other water quality parameters in coral biodiversity loss and highlights the key role of eutrophication in shaping coastal coral reef ecosystems. This work also provides ecological thresholds that may be useful for water quality guidelines and nutrient mitigation policies.     

A new laboratory method for monitoring deep-water coral polyp behaviour

Deep-water corals are found along the oceanic margins world-wide and in the north east Atlantic the most abundant species is Lophelia pertusa (L.). There is now growing evidence that deep-water reefs formed by such species are coming under increasing pressures from resource exploitation, principally deep-sea trawling and hydrocarbon exploration. Here a novel and unobtrusive method of recording deep-water coral behaviour in the laboratory is described using time-lapse video to record silhouettes of the polyps under infrared illumination. The polyps of L. pertusa behaved asynchronously and did not show any clear diurnal patterns over a three-day observation period. Conceptually, sessile benthic suspension feeders appear to be vulnerable to smothering by sediments disturbed by bottom trawls or sub-seabed drilling. This method allows deep-water coral polyp behaviour to be continuously monitored in the laboratory and, therefore, the responses of coral polyps to environmental perturbations such as sedimentation can be recorded. Further work is necessary to resolve the sensitivity of deep-water corals to short-term environmental change and the combined approach of in situ monitoring and subsequent laboratory experimentation has great potential to address these issues.     

Environmental monitoring through functional biodiversity tools

The foundational concept for our research, which is largely shared by statisticians and ecologists, is that biodiversity is one of the most important indicators for environmental assessment. Because this indicator decreases in relation to ecosystem stressors, its measurement is essential for predicting future biological impacts of environmental damages. Although many indices have been proposed, no universally accepted measure for biodiversity has yet been established. In this context, the use of diversity profiles allows the analyst to display a family of indices in a single graph. However, this approach presents two critical limitations: first, a community composition is not always interpretable; second, the diversity profiles could lead to ranking issues when the curves intersect each other. The aim of this paper is to resolve these limitations by introducing functional biodiversity tools. In particular, three functional measures are proposed: the derivatives, the radius of curvature and the curve length. The analysis of derivatives and of the radius of curvature addresses the first limitation and highlights the characteristics, the differences and the similarities among communities. Arc length addresses the second limitation, providing a scalar measure that leads to a unique communities ranking for a given pattern of richness even if profiles intersect. The proposed functional models are applied to a real data set involving lichen biodiversity in the province of Genoa, Italy. Our approach allowed us to analyze the characteristics of lichen communities and to identify the biodiversity ranking. The combined use of these tools provides a useful method for identifying areas of high environmental risk, with the potential to address the monitoring of environmental policies.     

A simple system for monitoring biodiversity in protected areas of a developing country

The achievements of initiatives to strengthen biodiversity conservation in developing countries may be difficult to assess, since most countries have no system for monitoring biodiversity. This paper describes a simple and cost-effective, field-based biodiversity monitoring system developed specifically for areas where specialist staff is lacking. We discuss the preliminary lessons learned from protected areas in the Philippines. Whilst the monitoring system aims to identify trends in biodiversity and its uses so as to guide management action, it also promotes the participation of local people in the management, stimulates discussions about conservation amongst stakeholders and builds the capacity of park staff and communities in management skills. In addition, it seeks to provide people with direction regarding the aims of protected areas, and reinforces the consolidation of existing livelihoods through strengthening community-based resource management systems. The field methods are: (1) standardised recording of routine observations, (2) fixed point photographing, (3) line transect survey, and (4) focus group discussion. Both bio-physical and socio-economic data are used and given equal importance. The system can be sustained using locally available resources. The approach is useful in countries embarking on shared management of park resources with local communities, where rural people depend on use of natural ecosystems, and where the economic resources for park management are limited. We hope this paper will encourage other countries to develop their own biodiversity monitoring system, letting its development become a means for capacity building whilst at the same time supporting the creation of ownership.     

Towards the global monitoring of biodiversity change

Governments have set the ambitious target of reducing biodiversity loss by the year 2010. The scientific community now faces the challenge of assessing the progress made towards this target and beyond. Here, we review current monitoring efforts and propose a global biodiversity monitoring network to complement and enhance these efforts. The network would develop a global sampling programme for indicator taxa (we suggest birds and vascular plants) and would integrate regional sampling programmes for taxa that are locally relevant to the monitoring of biodiversity change. The network would also promote the development of comparable maps of global land cover at regular time intervals. The extent and condition of specific habitat types, such as wetlands and coral reefs, would be monitored based on regional programmes. The data would then be integrated with other environmental and socioeconomic indicators to design responses to reduce biodiversity loss.     

A comparison of the strength of biodiversity effects across multiple functions

In order to predict which ecosystem functions are most at risk from biodiversity loss, meta-analyses have generalised results from biodiversity experiments over different sites and ecosystem types. In contrast, comparing the strength of biodiversity effects across a large number of ecosystem processes measured in a single experiment permits more direct comparisons. Here, we present an analysis of 418 separate measures of 38 ecosystem processes. Overall, 45 % of processes were significantly affected by plant species richness, suggesting that, while diversity affects a large number of processes not all respond to biodiversity. We therefore compared the strength of plant diversity effects between different categories of ecosystem processes, grouping processes according to the year of measurement, their biogeochemical cycle, trophic level and compartment (above- or belowground) and according to whether they were measures of biodiversity or other ecosystem processes, biotic or abiotic and static or dynamic. Overall, and for several individual processes, we found that biodiversity effects became stronger over time. Measures of the carbon cycle were also affected more strongly by plant species richness than were the measures associated with the nitrogen cycle. Further, we found greater plant species richness effects on measures of biodiversity than on other processes. The differential effects of plant diversity on the various types of ecosystem processes indicate that future research and political effort should shift from a general debate about whether biodiversity loss impairs ecosystem functions to focussing on the specific functions of interest and ways to preserve them individually or in combination.