Continuous in situ monitoring of sediment deposition in shallow benthic environments

Sedimentation is considered the most widespread contemporary, human-induced perturbation on reefs, and yet if the problems associated with its estimation using sediment traps are recognized, there have been few reliable measurements made over time frames relevant to the local organisms. This study describes the design, calibration and testing of an in situ optical backscatter sediment deposition sensor capable of measuring sedimentation over intervals of a few hours. The instrument has been reconfigured from an earlier version to include 15 measurement points instead of one, and to have a more rugose measuring surface with a microtopography similar to a coral. Laboratory tests of the instrument with different sediment types, colours, particle sizes and under different flow regimes gave similar accumulation estimates to SedPods, but lower estimates than sediment traps. At higher flow rates (9–17 cm s^?1), the deposition sensor and SedPods gave estimates >10× lower than trap accumulation rates. The instrument was deployed for 39 d in a highly turbid inshore area in the Great Barrier Reef. Sediment deposition varied by several orders of magnitude, occurring in either a relatively uniform (constant) pattern or a pulsed pattern characterized by short-term (4–6 h) periods of ‘enhanced’ deposition, occurring daily or twice daily and modulated by the tidal phase. For the whole deployment, which included several very high wind events and suspended sediment concentrations (SSCs) >100 mg L^?1, deposition rates averaged 19 ± 16 mg cm^?2 d^?1. For the first half of the deployment, where SSCs varied from <1 to 28 mg L^?1 which is more typical for the study area, the deposition rate averaged only 8 ± 5 mg cm^?2 d^?1. The capacity to measure sedimentation rates over a few hours is discussed in terms of examining the risk from sediment deposition associated with catchment run-off, natural wind/wave events and dredging activities.     

Increased sediment supply to the Great Barrier Reef will not increase sediment accumulation at most coral reefs

 The rate of terrigenous sediment supply to the central Great Barrier Reef (GBR) coastline has probably increased in the last 200 years due to human impact on the catchments of central Queensland. This has led some researchers and environmental managers to conclude that corals within the GBR are under threat from increased turbidity and sedimentation. Using geological data and information on sedimentary processes, we show that turbidity levels and sediment accumulation rates at most coral reefs will not be increased, because these factors are not currently limited by sediment supply. Accepted: 15 January 1999     

Measurement and prediction of sedimentation in small Swedish lakes

Sediment traps were placed in 29 small lakes in south and central Sweden at 2 m below the surface of the lakes and at 2 m above the lake bottom. Traps were exposed for approximately 120 days during the summer months before collection. Rates of sedimentation in both top and bottom traps were compared to 32 catchment, morphometric and water column parameters in an attempt to identify the processes which influence sediment accumulation. Using only lake water pH, maximum lake depth (D_max) and lake surface area (A_o), 67% of the variance in the bottom trap sedimentation rates was explained. Only pH and A_o were useful predictors for the top traps. Using the bottom traps as a measure of gross sedimentation and the top traps as a measure of net sedimentation (plus periphyton growth in the traps), resuspension was separated from net sedimentation in the bottom traps. Resuspension calculated from these data is compared with more conventional methods of calculation.     

Differential thermal tolerance between algae and corals may trigger the proliferation of algae in coral reefs

Marine heatwaves can lead to rapid changes in entire communities, including in the case of shallow coral reefs the potential overgrowth of algae. Here we tested experimentally the differential thermal tolerance between algae and coral species from the Red Sea through the measurement of thermal performance curves and the assessment of thermal limits. Differences across functional groups (algae vs. corals) were apparent for two key thermal performance metrics. First, two reef‐associated algae species (Halimeda tuna and Turbinaria ornata) had higher lethal thermal limits than two coral species (Pocillopora verrucosa and Stylophora pistillata) conferring those species of algae with a clear advantage during heatwaves by surpassing the thermal threshold of coral survival. Second, the coral species had generally greater deactivation energies for net and gross primary production rates compared to the algae species, indicating greater thermal sensitivity in corals once the optimum temperature is exceeded. Our field surveys in the Red Sea reefs before and after the marine heatwave of 2015 show a change in benthic cover mainly in the southern reefs, where there was a decrease in coral cover and a concomitant increase in algae abundance, mainly turf algae. Our laboratory and field observations indicate that a proliferation of algae might be expected on Red Sea coral reefs with future ocean warming.     

Mass brooding of the blue octocoral,Heliopora coerulea on a sedimented equatorial reef

The octocoral Heliopora coerulea is a gonochoric surface brooder. Although the species is common on shallow Indo-Pacific coral reefs, information on its reproductive biology is limited and spawning timings have only been reported from four locations. We report the first observations of surface brooding in H. coerulea on a sedimented equatorial reef. In April 2014, 46 and 26 brooding colonies were recorded, respectively, from reefs fringing the islands of Kusu and Lazarus in Singapore. The brooded coral larvae were tightly bound to inflated coral polyps, forming a dense white mat which blanketed the brown coral tissue. The inflated polyps also protruded from layers of sediment, which accumulated in colony crevices, such that the brooded larvae were elevated above the settled sediment. Our observations supplement existing knowledge on the reproductive timing of H. coerulea and highlight the adaptations that improve survival of this species on sediment-impacted reefs.     

Scaling up calcification,respiration, and photosynthesis rates of six prominent coral taxa

Coral reefs provide a range of important services to humanity, which are underpinned by community‐level ecological processes such as coral calcification. Estimating these processes relies on our knowledge of individual physiological rates and species‐specific abundances in the field. For colonial animals such as reef‐building corals, abundance is frequently expressed as the relative surface cover of coral colonies, a metric that does not account for demographic parameters such as coral size. This may be problematic because many physiological rates are directly related to organism size, and failure to account for linear scaling patterns may skew estimates of ecosystem functioning. In the present study, we characterize the scaling of three physiological rates — calcification, respiration, and photosynthesis — considering the colony size for six prominent, reef‐building coral taxa in Mo''orea, French Polynesia. After a seven‐day acclimation period in the laboratory, we quantified coral physiological rates for three hours during daylight (i.e., calcification and gross photosynthesis) and one hour during night light conditions (i.e., dark respiration). Our results indicate that area‐specific calcification rates are higher for smaller colonies across all taxa. However, photosynthesis and respiration rates remain constant over the colony‐size gradient. Furthermore, we revealed a correlation between the demographic dynamics of coral genera and the ratio between net primary production and calcification rates. Therefore, intraspecific scaling of reef‐building coral physiology not only improves our understanding of community‐level coral reef functioning but it may also explain species‐specific responses to disturbances.     

Benthic Reef Primary Production in Response to Large Amplitude Internal Waves at the Similan Islands (Andaman Sea,Thailand)

Coral reefs are facing rapidly changing environments, but implications for reef ecosystem functioning and important services, such as productivity, are difficult to predict. Comparative investigations on coral reefs that are naturally exposed to differing environmental settings can provide essential information in this context. One prevalent phenomenon regularly introducing alterations in water chemistry into coral reefs are internal waves. This study therefore investigates the effect of large amplitude internal waves (LAIW) on primary productivity in coral reefs at the Similan Islands (Andaman Sea, Thailand). The LAIW-exposed west sides of the islands are subjected to sudden drops in water temperature accompanied by enhanced inorganic nutrient concentrations compared to the sheltered east. At the central island, Ko Miang, east and west reefs are only few hundred meters apart, but feature pronounced differences. On the west lower live coral cover (-38 %) coincides with higher turf algae cover (+64 %) and growth (+54 %) compared to the east side. Turf algae and the reef sand-associated microphytobenthos displayed similar chlorophyll a contents on both island sides, but under LAIW exposure, turf algae exhibited higher net photosynthesis (+23 %), whereas the microphytobenthos displayed reduced net and gross photosynthesis (-19 % and -26 %, respectively) accompanied by lower respiration (-42 %). In contrast, the predominant coral Porites lutea showed higher chlorophyll a tissues contents (+42 %) on the LAIW-exposed west in response to lower light availability and higher inorganic nutrient concentrations, but net photosynthesis was comparable for both sides. Turf algae were the major primary producers on the west side, whereas microphytobenthos dominated on the east. The overall primary production rate (comprising all main benthic primary producers) was similar on both island sides, which indicates high primary production variability under different environmental conditions.     

Sedimentation on three caribbean atolls: Glovers reef,lighthouse reef and turneffe Islands,belize

Summary The chief mode of carbonate sedimentation on the Belizean atolls Glovers Reef, Lighthouse Reef and Turneffe Islands is the accumulation of organically-derived particles. Variations in the distribution of the composition and grain-sizes of surface sediments, collected along transects across the atolls, are environmentally controlled. Two major sediment types may be distinguished. (1) Reef and fore reef sediments are dominated by fragments of coral, coralline algae andHalimeda. Mean grain-sizes range from 1–2 mm. (2) Back reef sediments contain more mollusk fragments, more fine-grained sediment (<125 μm) and appear to have fewerHalimeda fragments. In addition, sediments from inner platforms and shallow lagoonal parts of Glovers and Lighthouse Reefs comprise non-skeletal grains, namely fecal pellets. Sediments from lagoonal patch reefs may contain up to 20% coral fragments. Mean grain-sizes range from 0.1–1 mm and are finest on the inner platform and lagoon floor of the back reef environment. Within the reef and fore reef environments, it is not possible to distinguish sub-environments on the basis of textural and compositional differences of the sediments. Sediments from patch reefs contrast with those from back reef lagoons and inner platforms and are similar in terms of grain-sizes and compositions to reef and fore reef surface sediments. Non-skeletal grains forming in shallow parts of the back reef in Glovers and Lighthouse Reefs are interpreted to be indurated by interstitial precipitation of calcium carbonate from warm, supersaturated water flushing the sediment. The lack of hardened non-skeletal particles in the back reef sediments of Turneffe Islands is most probably due to the abundance of muddy, organic-rich sediment in the well-protected lagoon. Fine sediment is less permeable and organic films prevent cement overgrowth on particles.     

The impact of Hurricane Ivan on the primary productivity and metabolism of marsh tidal creeks in the NorthCentral Gulf of Mexico

Past research has examined hurricane impacts on marine communities such as seagrass beds, coral reefs, and mangroves, but studies on how hurricanes affect marsh tidal creeks are lacking despite the important ecological roles that marsh tidal creeks have in coastal ecosystems. Here we report on the impact of Hurricane Ivan, which made landfall on September 16, 2004, on the primary productivity and metabolism of six marsh tidal creeks in the NorthCentral Gulf of Mexico. The hurricane did not seem to have any large, lasting impact on nutrient concentrations, primary productivity, metabolism, and chlorophyll a concentration in the water-column of the marsh tidal creeks. In contrast, the hurricane seemed to largely decrease gross primary productivity, net productivity, and chlorophyll a concentration in the sediment of the marsh tidal creeks. The results observed for Hurricane Ivan were coincident with those observed for four other major storms that made landfall close to the study area during 2005, Tropical Storm Arlene and Hurricanes Cindy, Dennis, and Katrina. However, the apparent negative impact of major storms on the sediment of the marsh tidal creeks did not seem to be long-lived and appeared to be dissipated within a few weeks or months after landfall. This suggests that marsh tidal creeks mostly covered with bare sediment are less disturbed by hurricanes than other types of marine communities populated with bottom-attached and/or more rigid organisms, such as seagrass meadows, coral reefs, and mangroves, where hurricane impacts can be larger and last longer.     

Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef

Herbivorous fishes are a key functional group on coral reefs. These fishes are central to the capacity of reefs to resist phase shifts and regenerate after disturbance. Despite this importance few studies have quantified the direct impact of these fishes on coral reefs. In this study the roles of parrotfishes, a ubiquitous group of herbivorous fishes, were examined on reefs in the northern Great Barrier Reef. The distribution of 24 species of parrotfish was quantified on three reefs in each of three cross-shelf regions. Functional roles (grazing, erosion, coral predation and sediment reworking) were calculated as the product of fish density, bite area or volume, bite rate, and the proportion of bites taken from various substrata. Inner-shelf reefs supported high densities but low biomass of parrotfishes, with high rates of grazing and sediment reworking. In contrast, outer-shelf reefs were characterised by low densities and high biomass of parrotfish, with high rates of erosion and coral predation. Mid-shelf reefs displayed moderate levels of all roles examined. The majority of this variation in functional roles was attributable to just two species. Despite being rare, Bolbometopon muricatum, the largest parrotfish species, accounted for 87.5% of the erosion and 99.5% of the coral predation on outer-shelf reefs. B. muricatum displayed little evidence of selectivity of feeding, with most substrata being consumed in proportion to their availability. In contrast, the high density of Scarus rivulatus accounted for over 70% of the total grazing and sediment reworking on inner-shelf reefs. This marked variation in the roles of parrotfishes across the continental shelf suggests that each shelf system is shaped by fundamentally different processes. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Taphonomy of coral reefs: a review

This review summarises the major factors that affect the post-mortem history of skeletons in a coral reef environment. Skeletal material is traced from life, through death, breakdown, transport, burial and diagenesis to its final fossil form. The fact that most reef sediments are of skeletal composition poses problems of concentration or dilution of individual grain types in taphonomic analysis of reefs. Rates of supply of grains vary, not only with organism abundance and skeletal growth rates, but also with rates of physical and biological breakdown to transportable sediment. Physical and organic processes affect sedimentary structures and textures by mixing or segregating skeletal grains, though biogenic processes normally dominate in the protected setting of reef lagoons. The soft and hard substrates associated with reefs present different media for calcium carbonate accumulation and post-depositional disturbance, for example, loose sediments suffer bioturbation and rocks surfaces suffer bioerosion. The wide range of durability of skeletons and their susceptibility to diagenesis contribute further to the complexities of the preservation of coral reefs.     

Two decades of carbonate budget change on shifted coral reef assemblages: are these reefs being locked into low net budget states?

The ecology of coral reefs is rapidly shifting from historical baselines. One key-question is whether under these new, less favourable ecological conditions, coral reefs will be able to sustain key geo-ecological processes such as the capacity to accumulate carbonate structure. Here, we use data from 34 Caribbean reef sites to examine how the carbonate production, net erosion and net carbonate budgets, as well as the organisms underlying these processes, have changed over the past 15 years in the absence of further severe acute disturbances. We find that despite fundamental benthic ecological changes, these ecologically shifted coral assemblages have exhibited a modest but significant increase in their net carbonate budgets over the past 15 years. However, contrary to expectations this trend was driven by a decrease in erosion pressure, largely resulting from changes in the abundance and size-frequency distribution of parrotfishes, and not by an increase in rates of coral carbonate production. Although in the short term, the carbonate budgets seem to have benefitted marginally from reduced parrotfish erosion, the absence of these key substrate grazers, particularly of larger individuals, is unlikely to be conducive to reef recovery and will thus probably lock these reefs into low budget states.     

Standing stock of microzooplankton on coral reefs: a preliminary study

The standing stock of microzooplankton on mid-shelf coral reefsin the central Great Barrier Reef was investigated based onsamples collected with a Niskin bottle in February and October1989 The observed net decrease in standing stock of microzooplanktonacross the reef flat suggests that a lack of information ontheir standing stock on coral reefs has led to an underestimateof the allochthonous energy input to coral reef systems.     

Suspended sediment impairs habitat choice and chemosensory discrimination in two coral reef fishes

Increasing sediment onto coral reefs has been identified as a major source of habitat degradation, and yet little is known about how it affects reef fishes. In this study, we tested the hypothesis that sediment-enriched water impairs the ability of larval damselfish to find suitable settlement sites. At three different experimental concentrations of suspended sediment (45, 90, and 180 mg l⁻¹), pre-settlement individuals of two species (Pomacentrus amboinensis and P. moluccensis) were not able to select their preferred habitat. In a clear water environment (no suspended sediment), both species exhibit a strong preference for live coral over partially dead and dead coral, choosing live coral 70 and 80% of the time, respectively. However, when exposed to suspended sediment, no habitat choice was observed, with individuals of both species settling on live coral, partially dead, and dead coral, at the same frequency. To determine a potential mechanism underlying these results, we tested chemosensory discrimination in sediment-enriched water. We demonstrated that sediment disrupts the ability of this species to respond to chemical cues from different substrata. That is, individuals of P. moluccensis prefer live coral to dead coral in clear water, but in sediment-enriched water, chemical cues from live and dead coral were not distinguished. These results suggest that increasing suspended sediment in coral reef environments may reduce settlement success or survival of coral reef fishes. A sediment-induced disruption of habitat choice may compound the effects of habitat loss on coral reefs.     

Palau’s taro fields and mangroves protect the coral reefs by trapping eroded fine sediment

Sedimentation is one of the biggest threats facing coral reefs, not only in Palau, but everywhere in the world where there are reefs within reach of river plumes. Due to Palau’s largest island of Babeldaob’s steep topography, high rainfall, and highly erodible volcanic soil, erosion has been exacerbated by recent increases in land-use. Studies have documented the negative impacts of the resulting sedimentation on coral reefs around Babeldaob. Similar studies have shown that mangroves can trap about 30 % of the fine eroded sediment from land. This paper documents the filtering effects of cultivated wetland, namely that of taro (Colocasia esculenta) fields, which are natural wetlands used to grow taro, a source of starch for the population. A 4-month long field study was conducted to quantify the sediment accumulation rate for three different types of taro fields and to determine their sediment trapping efficiency. The results showed that the taro fields have the capacity to trap up to 90 % of sediments. We suggest that the sediment trapping capacity of mangroves and taro fields mitigated the negative impacts of soil runoff on coral reefs around Babeldaob while the island was being inhabited by early Palauans for many generations.     

Direct measurements of carbon and carbonate export from a coral reef ecosystem (Moorea Island , French Polynesia)

The export of carbon and carbonate from coral reefs was investigated through a multidisciplinary investigation of the hydrological, geochemical, sedimentological and biological features of Tiahura reef on the northwestern coast of Moorea Island (French Polynesia). The hydrology of the fore-reef is characterised by prevailing longshore western currents and a strong thermocline. As revealed by turbidity structures (benthic and intermediate nepheloid layers) and by the amount of particles collected by near-bottom sediment traps, horizontal and downslope advections of particles dominate over offshore vertical transport. The exported material is rich in carbonate (ca. 80%) and poor in organic matter (ca. 4%). Sedimentation rates at 430 m depth, i.e. definitive export, reached 209.6 mg m^-2 d^-1 (dry weight). Estimates of carbon and carbonates export for Tiahura reef also reported here represent respectively 47% and 21% of the organic and inorganic carbon produced within the reef.     

Historic impact of watershed change and sedimentation to reefs along west-central Guam

Using coral growth parameters (extension, density, calcification rates, and luminescence) and geochemical measurements (barium to calcium rations; Ba/Ca) from coral cores collected in west-central Guam, we provide a historic perspective on sediment input to coral reefs adjacent to the Piti-Asan watershed. The months of August through December are dominated by increased coral Ba/Ca values, corresponding to the rainy season. With river water enriched in barium related to nearshore seawater, coral Ba/Ca ratios are presented as a proxy for input of fine-grained terrigenous sediment to the nearshore environment. The century-long Ba/Ca coral record indicates that the Asan fore reef is within the zone of impact from discharged sediments transported from the Piti-Asan watershed and has experienced increased terrestrial sedimentation since the 1940s. This abrupt shift in sedimentation occurred at the same time as both the sudden denudation of the landscape by military ordinance and the immediate subsequent development of the Asan area through the end of the war, from 1944 through 1945. In response to rapid input of sediment, as determined from coral Ba/Ca values, coral growth rates were reduced for almost two decades, while calcification rates recovered much more quickly. Furthermore, coral luminescence is decoupled from the Ba/Ca record, which is consistent with degradation of soil organic matter through disturbance by forest fires, suggesting a potential index of fire history and degradation of soil organic matter. These patterns were not seen in the cores from nearby reefs associated with watersheds that have not undergone the same degree of landscape denudation. Taken together, these records provide a valuable tool for understanding the compounding effects of land-use change on coral reef health.     

珊瑚礁区碳循环研究进展

珊瑚礁是海洋中生产力水平最高的生态系统之一,其碳循环受到有机碳代谢(光合作用/呼吸作用)和无机碳代谢(钙化/溶解)两大代谢过程的共同作用,过程十分复杂.珊瑚礁植物的光合作用保证了有机碳的有效补充,动物摄食及微生物降解等生物过程驱动了珊瑚礁区有机碳高效循环,只有不超过7％的有机碳进入沉积物,而向大洋区水平输出的有机碳通量变化幅度较大,主要受到水动力条件的影响.珊瑚礁区碳酸盐沉积(无机碳代谢)是全球碳酸盐库的重要组成部分,年累积量达到全球CaCO3年累积量的23%～26%,是影响大气CO2浓度的重要组成;珊瑚礁是大气CO2源或汇则取决于净有机生产力与净无机生产力的比值(ROI),当ROI <0.6时,珊瑚礁区是大气CO2的源,反之,则是大气CO2的汇.     

The role of turtles as coral reef macroherbivores

Herbivory is widely accepted as a vital function on coral reefs. To date, the majority of studies examining herbivory in coral reef environments have focused on the roles of fishes and/or urchins, with relatively few studies considering the potential role of macroherbivores in reef processes. Here, we introduce evidence that highlights the potential role of marine turtles as herbivores on coral reefs. While conducting experimental habitat manipulations to assess the roles of herbivorous reef fishes we observed green turtles (Chelonia mydas) and hawksbill turtles (Eretmochelys imbricata) showing responses that were remarkably similar to those of herbivorous fishes. Reducing the sediment load of the epilithic algal matrix on a coral reef resulted in a forty-fold increase in grazing by green turtles. Hawksbill turtles were also observed to browse transplanted thalli of the macroalga Sargassum swartzii in a coral reef environment. These responses not only show strong parallels to herbivorous reef fishes, but also highlight that marine turtles actively, and intentionally, remove algae from coral reefs. When considering the size and potential historical abundance of marine turtles we suggest that these potentially valuable herbivores may have been lost from many coral reefs before their true importance was understood.