Distribution, diversity and environmental adaptation of highland papayas (Vasconcellea spp.) in tropical and subtropical America

Vasconcellea species, often referred to as highland papayas, consist of a group of fruit species that are closely related to the common papaya (Carica papaya). The genus deserves special attention as a number of species show potential as raw material in the tropical fruit industry, fresh or in processed products, or as genetic resources in papaya breeding programs. Some species show a very restricted distribution and are included in the IUCN Red List. This study on Vasconcellea distribution and diversity compiled collection data from five Vasconcellea projects and retrieved data from 62 herbaria, resulting in a total of 1,553 georeferenced collection sites, in 16 countries, including all 21 currently known Vasconcellea species. Spatial analysis of species richness clearly shows that Ecuador, Colombia and Peru are areas of high Vasconcellea diversity. Combination of species occurrence data with climatic data delimitates the potential distribution of each species and allows the modeling of potential richness at continent level. Based on these modeled richness maps, Ecuador appears to be the country with the highest potential Vasconcellea diversity. Despite differences in sampling densities, its neighboring countries, Peru and Colombia, possess high modeled species richness as well. A combination of observed richness maps and modeled potential richness maps makes it possible to identify important collection gaps. A Principal Component Analysis (PCA) of climate data at the collection sites allows us to define climatic preferences and adaptability of the different Vasconcellea species and to compare them with those of the common papaya.     

Long-term Effects of <Emphasis Type="Italic">Lupinus lepidus</Emphasis> on Vegetation Dynamics at Mount St. Helens

The nitrogen-fixing legume Lupinus lepidus is the most abundant herb on new volcanic surfaces at Mount St. Helen. We compared vegetation structure in 30 Lupinus colonies in three age classes (old, mature, or young based on known years of their establishment) to adjacent sites that were sparsely populated by Lupinus. Our goals were to determine if the age of colonies affected either species composition or vegetation structure and if colonies altered vegetation structure of a site. Species richness increased with site age and colonies had significantly greater richness. Mature colonies had lower cover and frequency of other species, while old colonies had significantly higher cover of other species, particularly mosses. Frequencies in colonies were higher than in adjacent sites. Diversity measures were highest in old colonies and least in mature ones. ANOVA showed that density effects of Lupinus were stronger than age effects on richness, cover, frequency, dominance, and diversity. The floristic similarity between colonies and adjacent sites declined with colony age, and sites without Lupinus became heterogeneous with age. Detrended correspondence analysis demonstrated floristic change as colonies aged and that the differences between colonies and sparse sites increased with age. Regressions of Lupinus frequency with measures of structure showed weak second order relationships that suggested that low densities of Lupinus inhibited other species, while higher densities promoted abundance and diversity. Together these results suggest that Lupinus is a key element that alters floristic successional trajectories and accelerates succession. However, its effects are complicated by the wide ranges of Lupinus density, the sequence of invasion, and by herbivores.     

Genetic diversity and population structure in Malus sieversii, a wild progenitor species of domesticated apple

Malus sieversii (Lebed.) M. Roem. is a wild progenitor species of the domesticated apple. It is found across a mountainous region of central Asia and has been the focus of several collection expeditions by the USDA-ARS-National Plant Germplasm System. This study used microsatellite variation at seven loci to estimate diversity and differentiation within M. sieversii using several complimentary approaches. Multilocus genotypes were amplified from 949 individuals representing seedling trees from 88 half-sib families from eight M. sieversii populations collected in Kazakhstan. Apportioning of genetic variation was estimated at both the family and site level. Analyses using a hierarchical model to estimate F _st showed that differentiation among individual families is more than three times greater than differentiation among sites. In addition, average gene diversity and allelic richness varied significantly among sites. A rendering of a genetic network among all sites showed that differentiation is largely congruent with geographical location. In addition, nonhierarchical Bayesian assignment methods were used to infer genetic clusters across the collection area. We detected four genetic clusters in the data set. The quality of these assignments was evaluated over multiple Markov Chain Monte Carlo runs using both posterior likelihood and stability of the assignments. The spatial pattern of genetic assignments among the eight collection sites shows two broadly distributed and two narrowly distributed clusters. These data indicate that the southwestern collection sites are more admixed and more diverse than the northern sites.     

Biodiversity loss in Appalachian headwater streams (Kentucky,USA): Plecoptera and Trichoptera communities

Government and academic studies indicate that many streams in the Appalachian Mountains have degraded biological communities stemming from a variety of regional landuses. Headwater stonefly (Plecoptera) and caddisfly (Trichoptera) assemblages were assessed between 1999 and 2004 in relation to pervasive landuse disturbances (coal mining and residential) in mountainous areas of eastern Kentucky, USA. Indicator metrics (richness, abundance, tolerance, and an observed/expected (O/E) null model) were compared among 94 sites with different land use pressures including least disturbed reference, residential, mining, and mixed mining and residential categories. Thirty-three stonefly species from 26 genera and 9 families were identified; Leuctra, Acroneuria, Haploperla, and Isoperla comprised the core genera that commonly decreased with disturbance. Caddisflies were represented by 48 species, 32 genera, and 14 families. Core caddisfly genera (Neophylax, Pycnopsyche, Rhyacophila, Lepidostoma, and Wormaldia) were extirpated from most disturbed sites. Species richness was significantly higher at reference sites and reference site mean tolerance value was lowest compared to all other categories; relative abundance of both orders was variable between disturbance groups. Non-metric multidimensional scaling (for riffle-dwelling stonefly and caddisfly genera) clustered reference sites distinctly from most other sites. The O/E index was highly correlated with individual habitat and chemical stressors (pH, conductivity) and on average, it estimated ~ 70% loss of common stoneflies and caddisflies across all disturbed landuse categories. Expected plecopteran and trichopteran communities were radically altered in streams draining mining and residential disturbance. Long-term impacts incurred by both landuses will continue to depress these vulnerable indigenous fauna.     

Ecogeographical analysis of the distribution of six Trifolium species in Sardinia

Collections of six species of Trifolium (Fabaceae) were made at 16 sites across the island of Sardinia in June/July 1998 and detailed ecogeographic information was recorded at each site. The six species collected were the inbreeding T. glomeratum, T. subterraneum and T. tomentosum, and the outcrossing T. nigrescens, T. michelianum and T. resupinatum. A principal components analysis and canonical variate analysis were conducted to group the sites, using the ecogeographical variables collected at each site. The variables that were found to be most important in grouping the sites were: mean January and July temperature, mean annual rainfall, latitude, longitude and soil pH. None of the six species were limited to only one ecogeographical group. However, it was often found to be only one or two variables that were determining their distribution. It is suggested that more detailed analysis of ecogeographic data of collection sites will become vital for improved planning of future collection missions, as the cost of collections and genetic erosion increases.     

Ex Situ Conservation Priorities for the Wild Relatives of Potato (Solanum L. Section Petota)

Crop wild relatives have a long history of use in potato breeding, particularly for pest and disease resistance, and are expected to be increasingly used in the search for tolerance to biotic and abiotic stresses. Their current and future use in crop improvement depends on their availability in ex situ germplasm collections. As these plants are impacted in the wild by habitat destruction and climate change, actions to ensure their conservation ex situ become ever more urgent. We analyzed the state of ex situ conservation of 73 of the closest wild relatives of potato (Solanum section Petota) with the aim of establishing priorities for further collecting to fill important gaps in germplasm collections. A total of 32 species (43.8%), were assigned high priority for further collecting due to severe gaps in their ex situ collections. Such gaps are most pronounced in the geographic center of diversity of the wild relatives in Peru. A total of 20 and 18 species were assessed as medium and low priority for further collecting, respectively, with only three species determined to be sufficiently represented currently. Priorities for further collecting include: (i) species completely lacking representation in germplasm collections; (ii) other high priority taxa, with geographic emphasis on the center of species diversity; (iii) medium priority species. Such collecting efforts combined with further emphasis on improving ex situ conservation technologies and methods, performing genotypic and phenotypic characterization of wild relative diversity, monitoring wild populations in situ, and making conserved wild relatives and their associated data accessible to the global research community, represent key steps in ensuring the long-term availability of the wild genetic resources of this important crop.     

The mid-domain effect applied to elevational gradients: species richness of small mammals in Costa Rica

Aim The objective of this study was to comprehensively document and examine the alpha and gamma patterns of species richness in non-volant, small mammals (rodents, shrews and mouse opossums) along a tropical elevational gradient. These data were used to determine the support for existing hypotheses of species richness encompassing mid-domain null models, as well as climatic, and community overlap hypotheses. Location Field studies were conducted along a Caribbean slope of the Río Peñas Blancas watershed in the north-eastern region of Costa Rica between 750 and 1850 m at 10 sampling sites. Methods Species richness and abundances of small mammals were surveyed for four seasons including three temporal replicates at each of five elevational sites: late wet season (2000), early wet season (2001), and dry season (2002), and one spatial replicate at five different sites within the same elevations during the late wet season (2001). Species richness at elevations below 700 m was compiled from specimen records from 23 US national and international collections. Predictions of a null model based solely on geometric constraints were examined using a Monte Carlo simulation program, Mid-Domain Null. Results In 16,900 trap nights, 1561 individuals from 16 species were captured. Both alpha and gamma species richness peaked at mid-elevation between 1000 and 1300 m, with richness declining both at higher and lower elevations. Most of the empirical curves of species richness occur within 95% prediction curves of the mid-domain model, although deviations from the null model exist. Regression of the empirical richness on the null model predictions explained nearly half of the variation observed (r² = 0.45, P = 0.002). Main conclusions The geometric constraints of montane topography appear to influence the diversity pattern of small mammals, although climatic conditions including an intermediate rainfall and temperature regime, and distance from the persistent cloud cap also are correlated with the pattern of species richness. The predictions of productivity, and community overlap hypotheses are not supported with the empirical data.     

Understorey gaps influence regeneration dynamics in subtropical coastal dune forest

Dominant understorey species influence forest dynamics by preventing tree regeneration at the seedling stage. We examined factors driving the spatial distribution of the monocarpic species Isoglossa woodii, a dominant understorey herb in coastal dune forests, and the effect that its cover has on forest regeneration. We used line transects to quantify the area of the forest understorey with I. woodii cover and with gaps in the cover. Paired experimental plots were established in semi-permanent understorey gaps with I. woodii naturally absent and in adjacent areas with I. woodii present to compare plant community composition, soil, and light availability between the two habitats. Isoglossa woodii was widespread, covering 65–95% of the understorey, while gaps covered the remaining 5–35% of the area. The spatial distribution of this species was strongly related to tree canopy structure, with I.␣woodii excluded from sites with dense tree cover. Seedling establishment was inhibited by low light availability (<1% of PAR) beneath I.␣woodii. When present, I. woodii reduced the density and species richness of tree seedlings. The tree seedling community beneath I. woodii represented a subset of the seedling community in gaps. Some species that were found in gaps did not occur beneath I. woodii at all. There were no significant differences between the sapling and canopy tree communities in areas with I. woodii gaps and cover. In the coastal dune forest system, seedling survival under I. woodii is dependent on a species’ shade tolerance, its ability to grow quickly during I. woodii dieback, and/or the capacity to regenerate by re-sprouting and multi-stemming. We propose a general conceptual model of forest regeneration dynamics in which the abundant understorey species, I. woodii, limits local tree seedling establishment and survival but gaps in the understorey maintain tree species diversity on a landscape scale.     

Siberian wild rye (Elymus sibiricus L.): Genetic diversity of germplasm determined using DNA fingerprinting and SCoT markers

Elymus sibiricus is a perennial, self-pollinating, allotetraploid grass native to northern Asia. It is widely used in cultivated pastures and natural grassland due to excellent cold and drought tolerance, good forage quality, and adaptability to a variety of habitats. Information on the genetic diversity and variation among worldwide E. sibiricus germplasm is limited but necessary for germplasm collection, conservation and effective commercial use. In this study we ana lyzed genetic diversity and variation of 69 E. sibiricus accessions from the species range and constructed DNA fingerprinting profiles of 24 accessions using SCoT markers. A total of 173 bands were generated from 16 SCoT primers, 154 of which were polymorphic with 89.0% of polymorphic bands (PPB) occurring at the species level. The PPB within 8 geographical regions ranged from 2.3 to 54.3 %. Genetic variation was greater within geographical regions (57.9%) than between regions (42.1%). The 24 accessions from Qinghai-Tibet Plateau, Mongolia Plateau, Kazakhstan, and Russia were distinguished by their unique fingerprinting. This is the first report using SCoT markers for identifying cultivars and accessions of E. sibiricus. The DNA fingerprinting profiles of E. sibiricus were useful in germplasm collection and identification. The genetic diversity of worldwide E. sibiricus germplasm has been substantially affected by ecogeographical factors. Our results suggest that collecting and evaluating E. sibiricus germplasm from major geographic regions and unique environments broadens the available genetic base and illustrates the range of variation.     

Rarity-Weighted Richness: A Simple and Reliable Alternative to Integer Programming and Heuristic Algorithms for Minimum Set and Maximum Coverage Problems in Conservation Planning

Here we report that prioritizing sites in order of rarity-weighted richness (RWR) is a simple, reliable way to identify sites that represent all species in the fewest number of sites (minimum set problem) or to identify sites that represent the largest number of species within a given number of sites (maximum coverage problem). We compared the number of species represented in sites prioritized by RWR to numbers of species represented in sites prioritized by the Zonation software package for 11 datasets in which the size of individual planning units (sites) ranged from <1 ha to 2,500 km². On average, RWR solutions were more efficient than Zonation solutions. Integer programming remains the only guaranteed way find an optimal solution, and heuristic algorithms remain superior for conservation prioritizations that consider compactness and multiple near-optimal solutions in addition to species representation. But because RWR can be implemented easily and quickly in R or a spreadsheet, it is an attractive alternative to integer programming or heuristic algorithms in some conservation prioritization contexts.     

Benthic hydroids (Cnidaria: Hydrozoa) from Peter I Island (Southern Ocean, Antarctica)

Twenty-three species of benthic hydroids, belonging to eight families and 13 genera, were found in a hydroid collection from Peter I Island, collected during both the Bentart 2003 and Bentart 2006 Spanish expeditions with BIO Hespérides in 2003 and 2006. Fourteen out of the 23 species constitute new records for Peter I Island, raising the total number of known species in the area to 30, as also do seven out of the 13 genera. The majority of the species are members of the subclass Leptothecata; the subclass Anthoathecata being scarcely represented. Sertulariidae is the family with the greatest number of species in the collection, with eight species (35%), followed by Lafoeidae with five (22%). Symplectoscyphus with four species (17%) and both Antarctoscyphus and Halecium with three (13%), including H. frigidum sp. nov., were the most diverse genera. Twenty species (ca. 77%) are endemic to Antarctic waters, either with a circum-Antarctic (11 species, ca. 42%) or West Antarctic (9 species, ca. 35%) distribution. Twenty-four (ca. 92%) are restricted to Antarctic or Antarctic/sub-Antarctic waters; only two species have a wider distribution. Peter I Island hydroid fauna is composed of typical representatives of the Antarctic benthic hydroid fauna, though it is characterized by the low representation of some of the most diverse and widespread Antarctic genera (Schizotricha and Staurotheca).     

Shrubs as ecosystem engineers in a coastal dune: influences on plant populations,communities and ecosystems

Question: How do two shrubs with contrasting life‐history characteristics influence abundance of dominant plant taxa, species richness and aboveground biomass of grasses and forbs, litter accumulation, nitrogen pools and mineralization rates? How are these shrubs – and thus their effects on populations, communities and ecosystems – distributed spatially across the landscape? Location: Coastal hind‐dune system, Bodega Head, northern California. Methods: In each of 4 years, we compared vegetation, leaf litter and soil nitrogen under canopies of two native shrubs –Ericameria ericoides and the nitrogen‐fixing Lupinus chamissonis– with those in adjacent open dunes. Results: At the population level, density and cover of the native forb Claytonia perfoliata and the exotic grass Bromus diandrus were higher under shrubs than in shrub‐free areas, whereas they were lower under shrubs for the exotic grass Vulpia bromoides. In contrast, cover of three native moss species was highest under Ericameria and equally low under Lupinus and shrub‐free areas. At community level, species richness and aboveground biomass of herbaceous dicots was lower beneath shrubs, whereas no pattern emerged for grasses. At ecosystem level, areas beneath shrubs accumulated more leaf litter and had larger pools of soil ammonium and nitrate. Rates of nitrate mineralization were higher under Lupinus, followed by Ericameria and then open dune. At landscape level, the two shrubs – and their distinctive vegetation and soils – frequently had uniform spatial distributions, and the distance separating neighbouring shrubs increased as their combined sizes increased. Conclusions: Collectively, these data suggest that both shrubs serve as ecosystem engineers in this coastal dune, having influences at multiple levels of biological organization. Our data also suggest that intraspecific competition influenced the spatial distributions of these shrubs and thus altered the distribution of their effects throughout the landscape.     

Can herbarium records be used to map alien species invasion and native species expansion over the past 100 years?

Aim To determine if the temporal and spatial pattern of alien plant invasion and native plant expansion can be observed using 100 years of herbarium data from Oklahoma, USA, and to eliminate herbarium collection biases in such analyses. Location Oklahoma, USA. Methods Using herbarium records from the Oklahoma Vascular Plants Database from 1903 to 2004, we reconstructed the spatial and temporal collection history of two alien invasive taxa (Lonicera japonica and Tamarix spp.) and three native expansive species (Ambrosia psilostachya, Amphiachyris dracunculoides and Juniperus virginiana). To compare the overall collecting trend, groups of native non‐expansive taxa were selected as counterparts. We recorded the year of the first collection in each township in Oklahoma for all taxa. The cumulative number of occupied townships was log‐transformed, plotted against time and modelled with linear regression. The slope of the linear regression represented collection trend over time for the non‐expansive counterpart group. However, for the invasive and expansive species, the regression slope represented the collection effort plus the invasion or expansion rate. We calculated the proportion of invasive and expansive species to non‐expansive species by dividing the cumulative number of townships for each invasive or expansive species by the cumulative number of townships occupied by the counterpart group (proportion curve). Results Maps of the collection records of invasive and expansive taxa illustrated no discernible spatial invasion or expansion pattern. The slopes of the linear regression for alien invasive taxa were significantly steeper than those of their associated native non‐expansive counterparts, indicating an increase in abundance. Juniperus virginiana, L. japonica and Tamarix spp. exhibited one or more periods during which they were collected at a disproportionately higher rate than their native non‐expansive counterparts. Main conclusions Patterns of species invasion and expansion in Oklahoma were detected using techniques developed for regions with longer collecting plant histories. The proportion curve analysis eliminated some biases inherent in herbarium data by reducing the effect of collecting effort. Both the regression model and proportion curve analyses illustrate the temporal invasion patterns of alien invasive species. The native species did not show a clear expansion pattern. The information found in recently established herbaria may not be sensitive enough to detect the increase in abundance of native species.     

Hydroid assemblages from the Bellingshausen Sea (Antarctica): environmental factors behind their spatial distribution

Although scientific knowledge about the biodiversity of Antarctic benthic hydrozoans has considerably increased in recent years, little is known about their spatial distribution and underpinning factors. Trying to contribute to filling this gap, benthic hydroid spatial distribution in the Bellingshausen Sea (Southern Ocean) was studied. Samples were collected at 32 stations at depths between 86 and 3,304 m during Spanish Antarctic expeditions in 2003 and 2006. Sediments and bottom water properties were analyzed using an USNEL-type box corer and a Neil Brown Instrument System Mark III CTD, respectively. Forty species were reported (Acryptolaria sp., Stegopoma plicatile, Staurotheca dichotoma having the highest percentages of occurrence), representing ca. 19 % of the species richness of the known benthic hydroid fauna of the Southern Ocean. Three well-defined assemblages (shallow, deep and transitional) were established based on significant differences in species occurrence. Benthic hydroid spatial distribution in the Bellingshausen Sea seems to be controlled mainly by depth and substrate (most hydrozoan species are epibiotic), by species dispersal abilities and by species resilience to changing hydrodynamic conditions. The level of species richness found in the present study, compared with other Antarctic areas, gives support to arguments stated by authors against the idea that the Bellingshausen Sea is “a benthos desert” controlled by oligotrophic conditions and intense iceberg traffic.     

Genetic diversity in Capsicum baccatum is significantly influenced by its ecogeographical distribution

ABSTRACT: BACKGROUND: The exotic pepper species Capsicum baccatum, also known as the aji or Peruvian hot pepper, is comprised of wild and domesticated botanical forms. The species is a valuable source of new genes useful for improving fruit quality and disease resistance in C. annuum sweet bell and hot chile pepper. However, relatively little research has been conducted to characterize the species, thus limiting its utilization. The structure of genetic diversity in a plant germplasm collection is significantly influenced by its ecogeographical distribution. Together with DNA fingerprints derived from AFLP markers, we evaluated variation in fruit and plant morphology of plants collected across the species native range in South America and evaluated these characters in combination with the unique geography, climate and ecology at different sites where plants originated. RESULTS: The present study mapped the ecogeographic distribution, analyzed the spatial genetic structure, and assessed the relationship between the spatial genetic pattern and the variation of morphological traits in a diverse C. baccatum germplasm collection spanning the species distribution. A combined diversity analysis was carried out on the USDA-ARS C. baccatum germplasm collection using data from GIS, morphological traits and AFLP markers. The results demonstrate that the C. baccatum collection covers wide geographic areas and is adapted to divergent ecological conditions in South America ranging from cool Andean highland to Amazonia rainforest. A high level of morphological diversity was evident in the collection, with fruit weight the leading variable. The fruit weight distribution pattern was compatible to AFLP-based clustering analysis for the collection. A significant spatial structure was observed in the C. baccatum gene pool. Division of the domesticated germplasm into two major regional groups (Western and Eastern) was further supported by the pattern of spatial population structure. CONCLUSIONS: The results reported improve our understanding of the combined effects of geography, ecology and human intervention on organization of the C. baccatum genepool. The results will facilitate utilization of C. baccatum for crop improvement and species conservation by providing a framework for efficient germplasm collection management and guidance for future plant acquisitions.     

中国花楸属植物的分布及研究现状

花楸属(Sorbus L.)植物冠形多态、花色秀美、果实缤纷、四季叶色各异，具有很高的园艺观赏价值，但因属下种间杂交、多倍化和无融合生殖的存在，所以花楸属也是分类学上比较困难的一个类群。该研究通过细致整理和分析国家标本资源库和全球数字化植物标本数据库中花楸属植物标本信息，了解中国花楸属物种采集位置和野生种质资源的分布中心，构建中国花楸属植物标本数据库，为全国第一次林草种质资源的普查与收集提供参考；在明晰花楸属植物资源分布位置和生境的基础上，发现中国花楸属植物资源居世界之首且花楸属物种多分布在高海拔区域，尤其是在中国西南部的山区，分布有一半以上的中国花楸属物种，在该区域花楸属物种多种倍性并存、杂交频繁发生。然而，这是否为该属植物物种多样性丰富的关键因素，把高海拔分布的花楸属物种引种到低海拔区域能否适应以及如何适应低海拔的夏季高温尚不清楚。基于此，作者就自己的专业领域进一步检索了花楸属植物在形态分类与系统发育、适应性进化和保护遗传学、植物资源利用等方面的研究现状，梳理出花楸属植物目前研究尚未解决的问题，并进一步指出未来研究需重点关注的方向。建议未来的研究重点关注以下问题：(1)在坚实的系统...     

Coexistence of Banksia species in southwestern Australia: the role of regional and local processes

Abstract. 60 of the 75 Banksia species are confined to southwestern Australia where five or six species often coexist. We explored the role of regional species richness, niche differentiation, and habitat specialization in structuring banksia assemblages. The diversity of growth forms and categories of seed production and response to fire were assessed in actual assemblages at 40 sites throughout southwestern Australia. Diversity indices at each site were compared with those from null communities assembled on the basis of the abundance and sociability of taxa in regional species pools. The relationship between local and regional species richness suggests that processes at the scale of 100-m² quadrats limit local richness and therefore coexistence. However, there was no consistent evidence that taxa are differentiated by growth form or regeneration strategy. No particular biological profile makes a banksia adept at coexisting with a wide range of other taxa. Habitat specialization is an important factor contributing to lower local richness than would be predicted from niche differentiation of taxa in regional pools. There is recent empirical evidence of several mechanisms whereby the number of coexisting banksias is increased beyond the limits suggested by simple niche theories. Variability in the fire regime also provides a mechanism for maintaining local species richness because different fires favour recruitment of different taxa.     

A gap analysis methodology for collecting crop genepools: a case study with phaseolus beans

Background

The wild relatives of crops represent a major source of valuable traits for crop improvement. These resources are threatened by habitat destruction, land use changes, and other factors, requiring their urgent collection and long-term availability for research and breeding from ex situ collections. We propose a method to identify gaps in ex situ collections (i.e. gap analysis) of crop wild relatives as a means to guide efficient and effective collecting activities.

Methodology/Principal Findings

The methodology prioritizes among taxa based on a combination of sampling, geographic, and environmental gaps. We apply the gap analysis methodology to wild taxa of the Phaseolus genepool. Of 85 taxa, 48 (56.5%) are assigned high priority for collecting due to lack of, or under-representation, in genebanks, 17 taxa are given medium priority for collecting, 15 low priority, and 5 species are assessed as adequately represented in ex situ collections. Gap “hotspots”, representing priority target areas for collecting, are concentrated in central Mexico, although the narrow endemic nature of a suite of priority species adds a number of specific additional regions to spatial collecting priorities.

Conclusions/Significance

Results of the gap analysis method mostly align very well with expert opinion of gaps in ex situ collections, with only a few exceptions. A more detailed prioritization of taxa and geographic areas for collection can be achieved by including in the analysis predictive threat factors, such as climate change or habitat destruction, or by adding additional prioritization filters, such as the degree of relatedness to cultivated species (i.e. ease of use in crop breeding). Furthermore, results for multiple crop genepools may be overlaid, which would allow a global analysis of gaps in ex situ collections of the world''s plant genetic resources.