Unraveling the relative contribution of inter‐ and intrapopulation functional variability in wild populations of a tadpole species

Functional traits are increasingly recognized as an integrative approach by ecologists to quantify a key facet of biodiversity. And these traits are primarily expressed as species means in previous studies, based on the assumption that the effects of intraspecific variability can be overridden by interspecific variability when studying functional ecology at the community level. However, given that intraspecific variability could also have important effects on community dynamics and ecosystem functioning, empirical studies are needed to investigate the importance of intraspecific variability in functional traits. In this study, 256 Scutiger boulengeri tadpole individuals from four different populations are used to quantify the functional difference between populations within a species, and the relative contribution of inter‐ and intrapopulation variability in functional traits. Our results demonstrate that these four populations differ significantly in functional attributes (i.e., functional position, functional richness, and low functional overlap), indicating that individuals from different populations within a species should be explicitly accounted for in functional studies. We also find similar relative contribution of inter‐ (~56%) and intrapopulation (~44%) variation to the total variability between individuals, providing evidence that individuals within populations should also be incorporated in functional studies. Overall, our results support the recent claims that intraspecific variability cannot be ignored, as well as the general idea of “individual level” research in functional ecology.     

Monitoring age‐related trends in genomic diversity of Australian lungfish

An important challenge for conservation science is to detect declines in intraspecific diversity so that management action can be guided towards populations or species at risk. The lifespan of Australian lungfish (Neoceratodus forsteri) exceeds 80 years, and human impacts on breeding habitat over the last half century may have impeded recruitment, leaving populations dominated by old postreproductive individuals, potentially resulting in a small and declining breeding population. Here, we conduct a “single‐sample” evaluation of genetic erosion within contemporary populations of the Australian lungfish. Genetic erosion is a temporal decline in intraspecific diversity due to factors such as reduced population size and inbreeding. We examined whether young individuals showed signs of reduced genetic diversity and/or inbreeding using a novel bomb radiocarbon dating method to age lungfish nonlethally, based on ¹⁴C ratios of scales. A total of 15,201 single nucleotide polymorphic (SNP) loci were genotyped in 92 individuals ranging in age from 2 to 77 years old. Standardized individual heterozygosity and individual inbreeding coefficients varied widely within and between riverine populations, but neither was associated with age, so perceived problems with recruitment have not translated into genetic erosion that could be considered a proximate threat to lungfish populations. Conservation concern has surrounded Australian lungfish for over a century. However, our results suggest that long‐lived threatened species can maintain stable levels of intraspecific variability when sufficient reproductive opportunities exist over the course of a long lifespan.     

Plasticity in above‐ and belowground resource acquisition traits in response to single and multiple environmental factors in three tree species

Functional trait plasticity is a major component of plant adjustment to environmental stresses. Here, we explore how multiple local environmental gradients in resources required by plants (light, water, and nutrients) and soil disturbance together influence the direction and amplitude of intraspecific changes in leaf and fine root traits that facilitate capture of these resources. We measured population‐level analogous above‐ and belowground traits related to resource acquisition, i.e. “specific leaf area”–“specific root length” (SLA–SRL), and leaf and root N, P, and dry matter content (DMC), on three dominant understory tree species with contrasting carbon and nutrient economics across 15 plots in a temperate forest influenced by burrowing seabirds. We observed similar responses of the three species to the same single environmental influences, but partially species‐specific responses to combinations of influences. The strength of intraspecific above‐ and belowground trait responses appeared unrelated to species resource acquisition strategy. Finally, most analogous leaf and root traits (SLA vs. SRL, and leaf versus root P and DMC) were controlled by contrasting environmental influences. The decoupled responses of above‐ and belowground traits to these multiple environmental factors together with partially species‐specific adjustments suggest complex responses of plant communities to environmental changes, and potentially contrasting feedbacks of plant traits with ecosystem properties. We demonstrate that despite the growing evidence for broadly consistent resource‐acquisition strategies at the whole plant level among species, plants also show partially decoupled, finely tuned strategies between above‐ and belowground parts at the intraspecific level in response to their environment. This decoupling within species suggests a need for many species‐centred ecological theories on how plants respond to their environments (e.g. competitive/stress‐tolerant/ruderal and response‐effect trait frameworks) to be adapted to account for distinct plant‐environment interactions among distinct individuals of the same species and parts of the same individual.     

Genetic differentiation among populations of the threatened Bellevalia webbiana (Asparagaceae) and its consequence on conservation

Abstract

The narrow central Italian endemic and threatened Webb’s hyacinth (Bellevalia webbiana), a perennial herb, is a clear example of a species that has disappeared from several localities due to the development of human settlements. We characterized population genetics of this species to infer possible threats to its viability. We used a dominant DNA fingerprinting approach to infer genetic relationships among the five richest populations known for this species (each with N?>?50 individuals). We highlighted phenomena of genetic erosion, with values of intrapopulation-gene-diversity quite similar across all populations (mean value 0.113), but a mean F _st value only slightly below the mean found in other plant species using similar approaches. Despite an overall genetic similarity among populations, a population from Faenza (Emilia-Romagna) is clearly separated from all the others on genetic grounds, and may be defined as an Evolutionarily Significant Unit, worth of special conservation attention. Interestingly, this latter population is also behaving differently from all the others in terms of both vegetative and reproductive functional strategies. Our results highlight the relevance of evolutionary approaches to conservation biology for preserving a genetic diversity linked to local adaptations.     

Genotype accounts for intraspecific variation in the timing and duration of multiple,sequential life-cycle events in a willow species

Premise

Phenological variation among individuals within populations is common and has a variety of ecological and evolutionary consequences, including forming the basis for population-level responses to environmental change. Although the timing of life-cycle events has genetic underpinnings, whether intraspecific variation in the duration of life-cycle events reflects genetic differences among individuals is poorly understood.

Methods

We used a common garden experiment with 10 genotypes of Salix hookeriana (coastal willow) from northern California, United States to investigate the extent to which genetic variation explains intraspecific variation in the timing and duration of multiple, sequential life-cycle events: flowering, leaf budbreak, leaf expansion, fruiting, and fall leaf coloration. We used seven clones of each genotype, for a total of 70 individual trees.

Results

Genotype affected each sequential life-cycle event independently and explained on average 62% of the variation in the timing and duration of vegetative and reproductive life-cycle events. All events were significantly heritable. A single genotype tended to be “early” or “late” across life-cycle events, but for event durations, there was no consistent response within genotypes.

Conclusions

This research demonstrates that genetic variation can be a major component underlying intraspecific variation in the timing and duration of life-cycle events. It is often assumed that the environment affects durations, but we show that genetic factors also play a role. Because the timing and duration of events are independent of one another, our results suggest that the effects of environmental change on one event will not necessarily cascade to subsequent events.     

Contrasting patterns of intraspecific trait variability in native and non-native plant species along an elevational gradient on Tenerife,Canary Islands

Background and AimsNon-native plant species are not restricted to lowlands, but increasingly are invading high elevations. While for both native and non-native species we expected variability of plant functional traits due to the changing environmental conditions along elevational gradients, we additionally assumed that non-native species are characterized by a more acquisitive growth strategy, as traits reflecting such a strategy have been found to correlate with invasion success. Furthermore, the typical lowland introduction of non-native species coming from multiple origins should lead to higher trait variability within populations of non-native species specifically at low elevations, and they might therefore occupy a larger total trait space.MethodsAlong an elevational gradient ranging from 55 to 1925 m a.s.l. on Tenerife, we collected leaves from eight replicate individuals in eight evenly distributed populations of five native and six non-native forb species. In each population, we measured ten eco-morphological and leaf biochemical traits and calculated trait variability within each population and the total trait space occupied by native and non-native species.Key ResultsWe found both positive (e.g. leaf dry matter content) and negative (e.g. leaf N) correlations with elevation for native species, but only few responses for non-native species. For non-native species, within-population variability of leaf dry matter content and specific leaf area decreased with elevation, but increased for native species. The total trait space occupied by all non-native species was smaller than and a subset of that of native species.ConclusionsWe found little evidence that intraspecific trait variability is associated with the success of non-native species to spread towards higher elevations. Instead, for non-native species, our results indicate that intermediate trait values that meet the requirements of various conditions are favourable across the changing environmental conditions along elevational gradients. As a consequence, this might prevent non-native species from overcoming abruptly changing environmental conditions, such as when crossing the treeline.     

Effectiveness of modern leaf analysis tools for the morpho‐ecological study of plants: the case of Primula albenensis

Scientific and technological progress has led to the creation of analysis tools that have revolutionized traditional studies in morphology and plant ecology. Recently developed methods and tools which, on the basis of leaf samples, allow for geometric morphometric analyses and the evaluation of functional strategies are good examples. These methods, still little used, have never been applied on leaf samples to simultaneously obtain information on their morphometry and the ecology of the plants. This article discusses the effectiveness of modern leaf analysis tools for geometric morphometrics (outline analysis) and studies of functional strategies based on the competitor‐stress tolerator‐ruderal (CSR) scheme, using a study of a steno‐endemic plant of the Alps, Primula albenensis Banfi et Ferl. as an example. These aspects were analyzed using leaf samples collected in the only two areas where this species grows. CSR analyses revealed that P. albenensis is not a stress‐tolerant species (C:S:R = 37:1:62), as previously thought. Moreover, no significant intraspecific differences in functional strategy were revealed. Instead, outline analysis highlighted a significant difference (p < 0.001) between leaves collected from the two sampling areas. The results of this study and others reported in the literature therefore suggest that these modern methods of leaf analysis are cheap, effective and relatively simple to perform. Furthermore, researchers are able to carry out geometric morphometric and CSR analysis using the same samples of leaves in order to maximize the information content provided by the analysis of a plant material which may not be easily available.     

COMPARATIVE METHODS AT THE SPECIES LEVEL: GEOGRAPHIC VARIATION IN MORPHOLOGY AND GROUP SIZE IN GREY-CROWNED BABBLERS (POMATOSTOMUS TEMPORALIS)

We show that a new comparative method that sheds light on evolutionary trends among species may also illuminate trends within species. This finding comes from a phylogenetic autocorrelation analysis of morphological traits among individuals sampled from ten populations of a cooperatively breeding songbird, the Grey-crowned Babbler (Pomatostomus temporalis). Highly variable mitochondrial DNA (mtDNA) sequences from both the eastern (Pomatostomus temporalis temporalis) and western (Pomatostomus temporalis rubeculus) lineages were used to define genetic distances among 120 individuals and to estimate correlations among individuals in wing length, tarsus length, and body weight via an intraspecific weighting matrix. The autoregressive model effectively removed intraspecific correlations for all three morphological variables, and the proportion of the total phenotypic variance due to genealogical relationships varied from 0.68 (weight) to 0.23 (tarsus). The analysis revealed correlations among the specific components of traits, in which none were previously detected (type-I error) and diminished correlations that appeared strong when phylogeny was ignored. Group size was the only trait for which the autoregressive model failed to remove intraspecific correlations, a result likely due to the plasticity, convergence, and clinal variation in this trait in both the eastern and western lineages. The autocorrelation analysis weakened significant negative correlations between group size and total values for wing length and body weight, but the interpretation of this result depends on the adaptive significance ascribed to the “phylogenetic component” of trait values removed by the analysis. Comparative methods employing distance matrices are one useful way of summarizing the pattern of nonhierarchical relationships among conspecific individuals (“tokogenetic” relationships, sensu Hennig).     

CYTOGENETIC STUDIES IN CLARKIA,SECTION PRIMIGENIA. II. A CYTOLOGICAL SURVEY OF CLARKIA ARCUATA AND CLARKIA LASSENENSIS

Clarkia arcuata and C. lassenensis are the 2 members of the subsection Flexicaules. Although closely related morphologically, they show very different patterns of chromosomal variability in nature. About 25% of the plants grown from wild seed of C. arcuata, a predominantly cross-pollinating species, were heterozygous for 1 or 2 translocations; such heterozygotes were found in 5 of the 9 populations sampled. An analysis of the chromosome pairing in intraspecific crosses indicated that at least 5 different translocations giving a ring of 4 with the “standard” strain, 2 giving a ring of 6, and 2 giving a ring of 8 are present in nature. No arrangement was found with widespread distribution, and it is impossible to say at present what might be the primitive arrangement of this species. One population was found to contain an inversion, a rearrangement which is very rare in Clarkia at the intraspecific level. In C. lassenensis, a predominantly self-pollinating species, only 6% (3 plants) of a sample of 53 were translocation heterozygotes, and these heterozygotes were found in only 2 of 13 populations. Intraspecific crosses indicated that one chromosome arrangement, the “standard,” was present throughout the species range.     

Sampling intraspecific variability in leaf functional traits: Practical suggestions to maximize collected information

The choice of the best sampling strategy to capture mean values of functional traits for a species/population, while maintaining information about traits’ variability and minimizing the sampling size and effort, is an open issue in functional trait ecology. Intraspecific variability (ITV) of functional traits strongly influences sampling size and effort. However, while adequate information is available about intraspecific variability between individuals (ITV_BI) and among populations (ITV_POP), relatively few studies have analyzed intraspecific variability within individuals (ITV_WI). Here, we provide an analysis of ITV_WI of two foliar traits, namely specific leaf area (SLA) and osmotic potential (π), in a population of Quercus ilex L. We assessed the baseline ITV_WI level of variation between the two traits and provided the minimum and optimal sampling size in order to take into account ITV_WI, comparing sampling optimization outputs with those previously proposed in the literature. Different factors accounted for different amount of variance of the two traits. SLA variance was mostly spread within individuals (43.4% of the total variance), while π variance was mainly spread between individuals (43.2%). Strategies that did not account for all the canopy strata produced mean values not representative of the sampled population. The minimum size to adequately capture the studied functional traits corresponded to 5 leaves taken randomly from 5 individuals, while the most accurate and feasible sampling size was 4 leaves taken randomly from 10 individuals. We demonstrate that the spatial structure of the canopy could significantly affect traits variability. Moreover, different strategies for different traits could be implemented during sampling surveys. We partially confirm sampling sizes previously proposed in the recent literature and encourage future analysis involving different traits.     

Multiplicity of ribosomal RNA genes in five species of the Liliaceae

Abstract

The percentages of DNA complementary to ribosomal RNA in five species of the Liliaceae family was determined by rRNA/DNA hybridization experiments. The rDNA percentages are appreciably lower in Scilla campanulata (0.050%), Scilla sibirica (0.060%) and Bellevalia webbiana (0.076%), species with higher DNA per 2C nucleus content, than in Allium schoenoprasum (0.106%) and Leopoldia comosa (0.148%), species with lower DNA per 2C nucleus content. A comparison is made with other results on the same subject.     

桂林岩溶石山青冈群落植物功能性状的种间和种内变异研究

研究植物功能性状的种间和种内变异,有助于揭示植物对环境的适应策略及其群落构建机制研究。以桂林岩溶石山青冈群落主要木本植物为研究对象,选取叶干物质含量（LDMC）、叶厚度（LT）、比叶面积（SLA）和木材密度（WD）4个功能性状,采用混合线性模型结合方差分解方法对其在种内和种间尺度的变异程度和相对贡献进行分析,同时运用零模型方法探讨驱动岩溶石山青冈群落构建的潜在机制。结果表明：（1） LDMC,LT,SLA和WD这4个性状在种内和种间水平上均存在不同程度的变异幅度,种间变异大于种内变异,但种内变异亦不容忽略。（2）零模型检验表明,将种内变异纳入考虑的环境过滤检测得到改善,基于个体性状值的尺度考虑群落构建机制研究是必要的。（3）对于桂林岩溶石山青冈群落,环境过滤作用确实是群落构建的重要驱动机制,与相似性限制作用和随机作用共同塑造了以青冈为优势物种的群落构建。     

Stable resource polymorphism along the benthic littoral–pelagic axis in an invasive crayfish

Although intraspecific variability is now widely recognized as affecting evolutionary and ecological processes, our knowledge on the importance of intraspecific variability within invasive species is still limited. This is despite the fact that understanding the linkage between within‐population morphological divergences and the use of different trophic or spatial resources (i.e., resource polymorphism) can help to better predict their ecological impacts on recipient ecosystems. Here, we quantified the extent of resource polymorphism within populations of a worldwide invasive crayfish species, Procambarus clarkii, in 16 lake populations by comparing their trophic (estimated using stable isotope analyses) and morphological characteristics between individuals from the littoral and pelagic habitats. Our results first demonstrated that crayfish occured in both littoral and pelagic habitats of seven lakes and that the use of pelagic habitat was associated with increased abundance of littoral crayfish. We then found morphological (i.e., body and chelae shapes) and trophic divergence (i.e., reliance on littoral carbon) among individuals from littoral and pelagic habitats, highlighting the existence of resource polymorphism in invasive populations. There was no genetic differentiation between individuals from the two habitats, implying that this resource polymorphism was stable (i.e., high gene flow between individuals). Finally, we demonstrated that a divergent adaptive process was responsible for the morphological divergence in body and chela shapes between habitats while difference in littoral reliance neutrally evolved under genetic drift. These findings demonstrated that invasive P. clarkii can display strong within‐population phenotypic variability in recent populations, and this could lead to contrasting ecological impacts between littoral and pelagic individuals.     

Intraspecific variability in leaf traits strongly affects alder leaf decomposition in a stream

This study assessed the intraspecific variability of senescent leaves of alder (Alnus glutinosa Gaertn.) and the effects of this variability on leaf decomposition in streams. Leaves were collected at five geographically distant locations in Europe. We analyzed 10 batches of leaf samples for seven quantitative leaf traits as well as leaf decomposition rate in coarse and fine mesh bags exposed in a single stream. The geographic origin of leaf samples largely explained the observed variation in litter quality and decomposition rate. Phosphorus (0.034–0.187%) and lignin (3.9–18.7%) concentrations in leaves varied widely. Together, these two traits accurately predicted leaf decomposition rate (r²=84.1%). Intraspecific variation in leaf decomposition rate was within a range similar to that reported for interspecific variation among co-occurring riparian plant species in Europe. Our study demonstrates extensive intraspecific variability in leaf traits on a continental scale, which can have enormous effects on major ecosystem processes such as leaf decomposition.     

Characterization of the Bellevalia sarmatica (Georgi) woronow populations from Volgograd oblast using molecular genetic identification

DNA samples obtained from the populations of the Red Data Book species Bellevalia sarmatica (Georgi) Worovow from Volgograd oblast were examined using RAPD and AFLP analyses. DNA marking revealed considerable differences in the levels of interpopulation and intraspecific polymorphism of the Bellevalia. Furthermore, RAPD analysis, despite of lower levels of interpopulation polymorphism identified, made it possible to obtain clearer data on population subdivision upon statistical treatment of the results. The results of this study can be used in developing conservation strategies for maintenance of the species abundance and genetic diversity, as well as in elaborating the criteria for construction genetic collections.     

Intra-specific and intra-sporocarp ITS variation of ectomycorrhizal fungi as assessed by rDNA sequencing of sporocarps and pooled ectomycorrhizal roots from a <Emphasis Type="Italic">Quercus</Emphasis> woodland

The Internal Transcribed Spacer (ITS) regions of ribosomal DNA are widely used as markers for phylogenetic analyses and environmental sampling from a variety of organisms including fungi, plants, and animals. In theory, concerted evolution homogenizes multicopy genes so that little or no variation exists within populations or individuals. However, contrary to theory, ITS variation has been confirmed in populations and individuals from a diverse range of eukaryotes. The presence of intraspecific and intra-individual variation in multicopy genes has important implications for ecological and phylogenetic studies, yet relatively little is known about natural variation of these genes, particularly at the community level. In this study, we examined intraspecific and intra-sporocarp ITS variation by DNA sequencing from sporocarps and pooled roots from 68 species of ectomycorrhizal fungi collected at a single site in a Quercus woodland. We detected ITS variation in 27 species, roughly 40% of the taxa examined. Although intraspecific ITS variation was generally low (0.16–2.85%, mean = 0.74%), it was widespread within this fungal community. We detected ITS variation in both sporocarps and ectomycorrhizal roots, and variation was present within species of Ascomycota and Basidiomycota, two distantly related lineages within the Fungi. We discuss the implications of such widespread ITS variability with special reference to DNA-based environmental sampling from diverse fungal communities. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

亚热带常绿落叶阔叶混交林植物功能性状的种间和种内变异

不同物种间的功能性状差异是自然生态系统中物种共存的基础, 而物种内个体间的性状变异对物种的共存和分布同样具有重要作用。本文以湖北星斗山自然保护区亚热带常绿落叶阔叶混交林内28种主要树种(通过物种多度排序获得, 其中常绿和落叶树种各14种)为研究对象, 探讨不同叶习性树种的4种功能性状(比叶面积、叶干物质含量、叶面积和比茎密度)在种间和种内的差异程度。结果表明: (1)常绿和落叶树种在4种功能性状上均存在显著差异, 常绿树种的比叶面积和叶面积显著低于落叶树种, 但叶干物质含量和比茎密度则显著高于落叶树种; (2)比叶面积的变化主要来源于叶习性(57.49%), 叶面积变化主要来源于种间(66.80%)和种内变异(27.52%), 叶干物质含量的变化主要来源于种间(38.12%)和种内(33.88%)变异, 但比茎密度的变化主要来源于种内变异(51.50%), 其次为种间变异(32.52%); (3)常绿和落叶树种种间水平的性状相关性可能掩盖各功能性状之间的相关性。种内变异能够显著影响群落间的植物功能性状差异, 但不同功能性状的种内变异程度存在差异。     

Differences in the leaf functional traits of six beech (Fagus sylvatica L.) populations are reflected in their response to water limitation

Patterns of intraspecific variation in functional traits have been widely studied across plant species to find out what general suites of traits provide functional advantage under specific environmental conditions. Much less is known about this variation within tree species and, in particular, about its relationship with performance variables such as photosynthetic rates under water deficit. Nevertheless, this knowledge is fundamental to understand the adaptive potential of drought sensitive tree species to increased aridity as predicted in the context of climate change.Intraspecific variation in photosynthetic performance and other leaf functional traits in response to water availability were examined in a glasshouse experiment using seedlings of six European beech populations. The physiological response of seedlings to a “water stress” treatment was compared to a “control” treatment along an experimental cycle of progressive soil water deficit and recovery. We found evidence of intraspecific variation in beech's photosynthetic performance and other leaf functional traits in response to water availability. We also detected intraspecific variation in leaf-level tolerance of water deficit and phenotypic plasticity to water availability suggesting a pattern shaped by both regional and local scale effects. The Swedish population was particularly sensitive to water deficit, being the only population showing impaired photochemical efficiency under the experimental water deficit. Leaf-level tolerance of water deficit was related to PNUE, but not to other functional traits, such as WUE, SLA or leaf nitrogen content, that have been described to vary across species in adaptation to drought tolerance. Our results support the idea that general trends for variation in functional traits across species do not necessarily reflect a similar pattern when observed at the intraspecific level. The observed functional variation between beech populations reaffirms the importance of local adaptation to water deficit in the context of climate change.