Thermodynamic Costs of Information Processing in Sensory Adaptation

Biological sensory systems react to changes in their surroundings. They are characterized by fast response and slow adaptation to varying environmental cues. Insofar as sensory adaptive systems map environmental changes to changes of their internal degrees of freedom, they can be regarded as computational devices manipulating information. Landauer established that information is ultimately physical, and its manipulation subject to the entropic and energetic bounds of thermodynamics. Thus the fundamental costs of biological sensory adaptation can be elucidated by tracking how the information the system has about its environment is altered. These bounds are particularly relevant for small organisms, which unlike everyday computers, operate at very low energies. In this paper, we establish a general framework for the thermodynamics of information processing in sensing. With it, we quantify how during sensory adaptation information about the past is erased, while information about the present is gathered. This process produces entropy larger than the amount of old information erased and has an energetic cost bounded by the amount of new information written to memory. We apply these principles to the E. coli''s chemotaxis pathway during binary ligand concentration changes. In this regime, we quantify the amount of information stored by each methyl group and show that receptors consume energy in the range of the information-theoretic minimum. Our work provides a basis for further inquiries into more complex phenomena, such as gradient sensing and frequency response.     

Mitochondria and reproduction

Mitochondria play a primary role in cellular energetic metabolism. They possess their own DNA, which is exclusively maternally transmitted. The relatively recent idea that mitochondria may be directly involved in human reproduction is arousing increasing interest in the scientific and medical community. It has been shown that the functional status of mitochondria contributes to the quality of oocytes and spermatozoa, and plays a part in the process of fertilisation and embryo development. Moreover, new techniques, such as ooplasm transfer, compromise the uniquely maternal inheritance of mitochondrial DNA, raising important ethical questions. This review discusses recent information about mitochondria in the field of human fertility and reproduction.     

PARASITES, THEIR RELATIONSHIPS AND THE DISINTEGRATION OF SCROPHULARIACEAE SENSU LATO

Summary. Plants that parasitise other plants have been among the most difficult plant groups to fit into classification systems due to their modified biology and their often highly reduced morphology. They are now considered to be found in about 16 families of flowering plants. Here we summarise current ideas about their relationships and provide information about their characteristics and utilisation. A major consequence of the revised classification of Orobanchaceae and related families has been the break-up of the traditional Scrophulariaceae, and here we summarise the new classification, focusing on genera of horticultural interest.     

THE FIORDLAND CRESTED PENGUIN EUDYPTES PACHYRHYNCHUS

Aspects of the biology of Eudyptes paclzyrhynchus nesting on the west coast of the South Island of New Zealand were studied over six seasons. Nests occur in small scattered groups on steep slopes covered with heavy rainforest, beneath which the birds are protected from temperature extremes. After about four months at sea, the breeding birds return to land at the height of the southern winter. They aggregate in small, loosely organized groups, breed annually and tend to retain the same nest-site and mate from year to year. They are ashore to breed for about 20 weeks before their chick departs. Incubation lasts for 31–36 days, and is undertaken in long shifts by both sexes in turn. It does not begin until the second and larger of the two eggs has been laid. The hatchling is guarded by the male for about three weeks, during which time it is fed almost daily by the female parent. The chick then joins a crèche and from then is fed by both parents until, at about 75 days old, it leaves for the sea. The parents also leave thereafter. Details are given of egg dimensions and weights, of egg loss, rates of chick-growth, the fate of twins and of the food brought to the chicks. Egg and chick losses are high. The heavy rainfall and frequent storms seem major causes of loss. The birds seem incapable of rearing more than one chick, and when two are hatched a size disparity soon appears leading to the death of the smaller, apparently through starvation. The adults moult annually in the forest, often on their nests, after some 60 to 80 days spent at sea fattening up for this event. They fast for about 25 days before their new plumage is sufficiently well grown to permit their return to feed. Their whereabouts out of the breeding season are unknown. Display and associated behaviour are complex. They involve many dramatic attitudes in which the flippers and crests feature prominently accompanied by loud vocalizations. In an Appendix figures are given for dimensions of breeding pairs and details of other morphological differences between the sexes and between members of the present species and its closely related congener E. robustus.     

Evolution rampant: house mice on Madeira

House mice are extra-ordinary animals – extra -ordinary in the literal sense of that word. They are pests – but also a valued laboratory animal. They are generalized rodents – and successful in habitats from tundra to tropics and from sea-level to high altitudes. They have differentiated into a perplexity of taxa, yet differ little in their general morphology. They were long scorned by ecologists as recently arrived commensals, but are increasingly illuminating evolutionary processes as new techniques are applied to their study. Local forms, once valued only by taxonomists, are proving ever more interesting as their genetics are probed. In 1992, Mathias & Mira described the apparently unexciting characteristics of mice living on the two main islands of the Madeira group, 600 km west of continental Portugal. Then in 2000, Britton-Davidian et al. discovered that there were at least six chromosomal (Robertsonian) races on the main island. In the past decade, studies of molecular and mitochondrial genomes have shown an array of variables and posed questions about the origins and subsequent evolution of these island mice. In this issue of Molecular Ecology , Förster et al. report on the mtDNA haplotypes found on the island and in mainland Portugal, discuss the probable source of the island colonizers, and consider data which might give information about the timing of the colonizing event(s).     

CPV,a stable and symmetrical machine for mRNA synthesis

The structure of cytoplasmic polyhedrosis virus (CPV), an insect pathogen from the Reoviridae family of double-strand RNA viruses, has been determined at 8 A by electron cryomicroscopy and image reconstruction. It provides new information about the functions of these viral particles as stable machines for mRNA synthesis.     

Cancer,Viruses, and Mass Migration: Paul Berg’s Venture into Eukaryotic Biology and the Advent of Recombinant DNA Research and Technology, 1967–1980

The existing literature on the development of recombinant DNA technology and genetic engineering tends to focus on Stanley Cohen and Herbert Boyer’s recombinant DNA cloning technology and its commercialization starting in the mid-1970s. Historians of science, however, have pointedly noted that experimental procedures for making recombinant DNA molecules were initially developed by Stanford biochemist Paul Berg and his colleagues, Peter Lobban and A. Dale Kaiser in the early 1970s. This paper, recognizing the uneasy disjuncture between scientific authorship and legal invention in the history of recombinant DNA technology, investigates the development of recombinant DNA technology in its full scientific context. I do so by focusing on Stanford biochemist Berg’s research on the genetic regulation of higher organisms. As I hope to demonstrate, Berg’s new venture reflected a mass migration of biomedical researchers as they shifted from studying prokaryotic organisms like bacteria to studying eukaryotic organisms like mammalian and human cells. It was out of this boundary crossing from prokaryotic to eukaryotic systems through virus model systems that recombinant DNA technology and other significant new research techniques and agendas emerged. Indeed, in their attempt to reconstitute ‹life’ as a research technology, Stanford biochemists’ recombinant DNA research recast genes as a sequence that could be rewritten thorough biochemical operations. The last part of this paper shifts focus from recombinant DNA technology’s academic origins to its transformation into a genetic engineering technology by examining the wide range of experimental hybridizations which occurred as techniques and knowledge circulated between Stanford biochemists and the Bay Area’s experimentalists. Situating their interchange in a dense research network based at Stanford’s biochemistry department, this paper helps to revise the canonized history of genetic engineering’s origins that emerged during the patenting of Cohen–Boyer’s recombinant DNA cloning procedures.     

Chemoenzymatic synthesis of 6omega -modified maltooligosaccharides from cyclodextrin derivatives

Regioselectively substituted maltooligosaccharides were prepared by enzymatic transformation of modified cyclodextrins by using simultaneously two different enzymes: cyclodextrin glucanotransferase (CGTase) and amyloglucosidase. Oligosaccharides were obtained in very good yields and their structures were identified by 1D and 2D NMR spectroscopy. These results provided new information about the specificity of the catalytic sites of CGTase and amyloglucosidase. They also offered new ways for the synthesis of regioselectively modified maltooligosaccharides.     

Ricerche Sull'ultrastruttura della Parete Cellulare

Abstract

A study about the cell wall of AVENA coleoptile epidermis cells. — A new type of lamellae structures embedded in the outer periclinal wall of oat coleoptile epidermis cells has been observed. These structures are present more frequently in the inner non-cutinized portion of the cell wall; their orientation, most often parallel to the cell surface, follows a regular pattern. They are formed by alternate layers of electrontransparent and electron-dense bands. The thickness of these lamellar bodies is about 200–300 Å; their length is rather difficult to determinate. They are bounded by a 30–40 Å thick membrane; the inner compartment is formed by a central highly manganophilic zone 50–70 Å thick where several thin lamellae can be seen and by two lateral zones about 40–50 Å in thickness.

Embedded in the cutinized portion of the wall some elliptical bodies have also been observed, surroundedd by a single membrane, 20 Å in thickness. The interior of these bodies shows thin lamellae enclosed in an electron-transparent stroma.

In experimental conditions unfavourable to growth, the frequency of these structures falls greatly. When the cell distension comes to end, their aspect undergoes deep changes. It is proposed in this paper that these new structures are involved in cell wall growth and development.     

Variability Is Not the Villain: Finding Patterns in Complex Natural Images

Everyone needs strong observational skills to solve challenging problems and make informed decisions. However, many students expect to find exact answers to their questions by using the internet and do not understand the role of uncertainty, especially in decision making and scientific research. Humans and other animals choose among many options by using information about their environment. During this activity, students use their observational skills to analyze data from images of grass shrimp and a highly variable salt-marsh habitat as case studies for prioritizing different pieces of information. They gain an increased appreciation of natural variability and learn to build a consensus in a scenario that has no correct answer.     

Role of internal water molecules in bacteriorhodopsin

Internal water molecules are considered to play a crucial role in the functional processes of proton pump proteins. They may participate in hydrogen-bonding networks inside proteins that constitute proton pathways. In addition, they could participate in the switch reaction by mediating an essential proton transfer at the active site. Nevertheless, little has been known about the structure and function of internal water molecules in such proteins. Recent progress in infrared spectroscopy and X-ray crystallography provided new information on water molecules inside bacteriorhodopsin, the light-driven proton pump. The accumulated knowledge on bacteriorhodopsin in the last decade of the 20th century will lead to a realistic picture of internal water molecules at work in the 21st century. In this review, I describe how the role of water molecules has been studied in bacteriorhodopsin, and what should be known about the role of water molecules in the future.     

Child and adolescent mental health services: purchasers' knowledge and plans.

All purchasers in the North East Thames Regional Health Authority were contacted by telephone and questioned systematically about their purchasing plans for child and adolescent mental health. Purchasers'' knowledge of the services they were purchasing was very limited. They had made little or no attempt to set quality standards or to monitor them. It is concluded that information about these services is so limited that purchasers would be unable to make informed decisions concerning changes in service patterns.     

Information content of binding sites on nucleotide sequences

Repressors, polymerases, ribosomes and other macromolecules bind to specific nucleic acid sequences. They can find a binding site only if the sequence has a recognizable pattern. We define a measure of the information (R sequence) in the sequence patterns at binding sites. It allows one to investigate how information is distributed across the sites and to compare one site to another. One can also calculate the amount of information (R frequency) that would be required to locate the sites, given that they occur with some frequency in the genome. Several Escherichia coli binding sites were analyzed using these two independent empirical measurements. The two amounts of information are similar for most of the sites we analyzed. In contrast, bacteriophage T7 RNA polymerase binding sites contain about twice as much information as is necessary for recognition by the T7 polymerase, suggesting that a second protein may bind at T7 promoters. The extra information can be accounted for by a strong symmetry element found at the T7 promoters. This element may be an operator. If this model is correct, these promoters and operators do not share much information. The comparisons between R sequence and R frequency suggest that the information at binding sites is just sufficient for the sites to be distinguished from the rest of the genome.     

The biology of mysids acclimatized in the reservoirs of the Volga River

Mysids were successfully introduced and aclimatized in the artificial reservoirs of the Volga River. They live there in the shallow sandy areas and their numbers amount to 300–500 ind./sq.m. They avoid direct sunlight, make slight vertical migrations according to the light intensity: during the morning hours their maximum is at the depth 0.2 m, at noon in 1.0–1.5 m. It has been proved that their biological features in the new localities do not differ from those in the original localities.     

Comparison of the tryptophan synthetase alpha-subunits of several species of Enterobacteriaceae

Creighton, T. E. (Stanford University, Stanford), D. R. Helinski, R. L. Somerville, and C. Yanofsky. Comparison of the tryptophan synthetase alpha subunits of several species of Enterobacteriaceae. J. Bacteriol. 91:1819-1826. 1966.-The tryptophan synthetase alpha subunits of Escherichia coli K-12, E. coli B, Shigella dysenteriae, Salmonella typhimurium, and Aerobacter aerogenes have been purified and their structures compared. Each of these alpha subunits exhibits a sedimentation coefficient of about 2.7S. Peptide patterns of trypsin plus chymotrypsin digests of the alpha subunits have indicated that all of the alpha subunits have peptide regions in common. The patterns of E. coli K-12, E. coli B, and S. dysenteriae alpha subunits appear to be nearly identical, whereas the alpha subunits from S. typhimurium and A. aerogenes differ from those of E. coli and from each other. It has also been shown that the E. coli structural gene for the alpha subunit is translated identically in E. coli and S. typhimurium.     

Patients with acute exacerbation of chronic obstructive pulmonary disease feel safe when treated at home: a qualitative study

ABSTRACT: BACKGROUND: The design of new interventions to improve health care for patients with chronic obstructive pulmonary disease (COPD) requires knowledge about what patients with an acute exacerbation experience as important and useful. The objective of the study was to explore patients' experiences of an early discharge hospital at home (HaH) treatment programme for exacerbations in COPD. METHODS: Six exacerbated COPD patients that were randomised to receiving HaH care and three patients randomised to receiving traditional hospital care were interviewed in semi-structured in-depth interviews. Four spouses were present during the respective patients' interviews. The interviews were audio-taped, transcribed and analysed by a four-step method for systematic text condensing. RESULTS: Despite limited assistance from the health care service, the patients and their spouses experienced the HaH treatment as safe. They expressed that information that was adapted to specific situations in their daily lives and given in a familiar environment had positive impact on their self-management of COPD. CONCLUSION: The results contribute to increased knowledge and awareness about what the patients experienced as important aspects of a HaH treatment programme. How adapted input from health services can make patients with exacerbation of COPD feel safe and better able to manage their disease, is important knowledge for developing new and effective health services for patients with chronic disease.     

Structural studies on lamellated osmiophilic bodies isolated from pig lung. 31P NMR results and water content

1. Lamellated osmiophilic bodies are intracellular organelles in which pulmonary surfactant is stored prior to secretion. They contain about 85% phospholipid (per dry weight) and dipalmitoyl phosphatidylcholine is a major constituent, and although their ultrastructure is uncertain it is generally supposed that they resemble liposomes. However, liposomes are stable because layers of water are interposed between the lipid bilayers whereas an essential aspect of the function of lamellated bodies is that, subsequent to their secretion, they are rapidly disrupted to form a surface-active film which covers the respiratory epithelium of the lung. 2. A new method for isolating lamellated bodies from pig lung is described which has the advantage of speed and simplicity and which results in increased yields. The homogeneity of the preparation is similar to that obtained by other methods. 3. 31P NMR spectra of lamellated bodies showed that at 40 degrees C about 95% of the phospholipid was present as extended bilayers and that about 5% was present in a phase exhibiting isotropic head group mobility (tau R less than 10(-5) s). It is suggested that this phase may be due to apolar proteins which are present both in lamellated bodies and in liposomes prepared from lipids extracted from them. 4. The internal water content of lamellated bodies has been measured gravimetrically and the hydration of the phospholipid head groups has been examined by 31P NMR. The two methods gave results in good agreement and show that there are about seven molecules of water/molecule of phospholipid. It is concluded that although the phospholipid head groups in lamellated bodies are fully hydrated, there is no zone of free water. 5. Lamellated bodies are osmotically insensitive to NaCl whereas liposomes prepared from lipids extracted from them behave like perfect osmometers. It is suggested that the osmotic insensitivity and restricted water content of lamellated bodies are important to their function and dependent upon polar proteins in the outer limiting membrane.