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1.
The evolution rate v(t) varies among diverse biosystems, but a general theory can be formulated when the dynamics of the biosystem stater x = x(t) = (x1, x2, x m ) T is considered in the m-dimensional space of states. A mathematical approach is proposed for evaluating such processes and describes the processes in terms of particular chaos of the statistical distribution functions f(x). In the case of complex multicomponent systems with a high dimension number m (m ?1) of the phase space of states, we propose using pairwise comparison matrices of samples x(t) when homeostasis is constant and calculating the parameters of quasiattractors. The Glensdorff–Prigogine thermodynamic approach to estimating evolution is inefficient in assessing the third-type systems, while it is applicable and the Prigogine theorem works at the level of molecular systems. Alterations in the state of the human neuromuscular system were found to lead to chaotic changes in the statistical functions f(x) in tremor recording samples, while quasiattractor parameters demonstrate a certain regularity.  相似文献   

2.
For studying how dynamical responses to external stimuli depend on the synaptic-coupling type, we consider two types of excitatory and inhibitory synchronization (i.e., synchronization via synaptic excitation and inhibition) in complex small-world networks of excitatory regular spiking (RS) pyramidal neurons and inhibitory fast spiking (FS) interneurons. For both cases of excitatory and inhibitory synchronization, effects of synaptic couplings on dynamical responses to external time-periodic stimuli S(t) (applied to a fraction of neurons) are investigated by varying the driving amplitude A of S(t). Stimulated neurons are phase-locked to external stimuli for both cases of excitatory and inhibitory couplings. On the other hand, the stimulation effect on non-stimulated neurons depends on the type of synaptic coupling. The external stimulus S(t) makes a constructive effect on excitatory non-stimulated RS neurons (i.e., it causes external phase lockings in the non-stimulated sub-population), while S(t) makes a destructive effect on inhibitory non-stimulated FS interneurons (i.e., it breaks up original inhibitory synchronization in the non-stimulated sub-population). As results of these different effects of S(t), the type and degree of dynamical response (e.g., synchronization enhancement or suppression), characterized by the dynamical response factor \(D_f\) (given by the ratio of synchronization degree in the presence and absence of stimulus), are found to vary in a distinctly different way, depending on the synaptic-coupling type. Furthermore, we also measure the matching degree between the dynamics of the two sub-populations of stimulated and non-stimulated neurons in terms of a “cross-correlation” measure \(M_c\). With increasing A, based on \(M_c\), we discuss the cross-correlations between the two sub-populations, affecting the dynamical responses to S(t).  相似文献   

3.
The native alpine plant Saussurea superba is widely distributed in Qinghai–Tibetan Plateau regions. The leaves of S. superba grow in whorled rosettes, and are horizontally oriented to maximize sunlight exposure. Experiments were conducted in an alpine Kobresia humilis meadow near Haibei Alpine Meadow Ecosystem Research Station (37°29′–37°45′N, 101°12′–101°33′E; alt. 3200 m). Leaf growth, photosynthetic pigments and chlorophyll fluorescence parameters were measured in expanding leaves of S. superba. The results indicate that leaf area increased progressively from inner younger leaves to outside fully expanded ones, and then slightly decreased in nearly senescent leaves, due to early unfavorable environmental conditions, deviating from the ordinary growth pattern. The specific leaf area decreased before leaves were fully expanded, and the leaf thickness was largest in mature leaves. There were no significant changes in the content of chlorophylls (Chl) and carotenoids (Car), but the ratios of Chl a/b and Car/Chl declined after full expansion of the leaves. The variation of Chl a/b coincided well with changes in photochemical quenching (q P) and the fraction of open PSII reaction centers (q L). The maximum quantum efficiency of PSII photochemistry after 5 min dark relaxation (F (v)/F (m)) continuously increased from younger leaves to fully mature leaves, suggesting that mature leaves could recover more quickly from photoinhibition than younger leaves. The light-harvesting capacity was relatively steady during leaf expansion, as indicated by the maximum quantum efficiency of open PSII centers (\(F_{\text{v}}^{{\prime }}\)/\(F_{\text{m}}^{{\prime }}\)). UV-absorbing compounds could effectively screen harmful solar radiation, and are a main protection way on the photosynthetic apparatus. The decline of q P and q L during maturation, together with limitation of quantum efficiency of PSII reaction centers (L (PFD)), shows a decrease of oxidation state of QA in PSII reaction centers under natural sunlight. Furthermore, light-induced (Φ NPQ) and non-light-induced quenching (Φ NO) were consistent with variation of L (PFD). It is concluded that the leaves of S. superba could be classified into four functional groups: young, fully expanded, mature, and senescent. Quick recovery from photoinhibition was correlated with protection by screening pigments, and high level of light energy trapping was correlated with preservation of photosynthetic pigments. Increasing of Φ NPQ and Φ NO during leaves maturation indicates that both thermal dissipation of excessive excitation energy in safety and potential threat to photosynthetic apparatus were strengthened due to the declination of q P and q L, and enhancement of L (PFD).  相似文献   

4.

Background

A metagenomic sample is a set of DNA fragments, randomly extracted from multiple cells in an environment, belonging to distinct, often unknown species. Unsupervised metagenomic clustering aims at partitioning a metagenomic sample into sets that approximate taxonomic units, without using reference genomes. Since samples are large and steadily growing, space-efficient clustering algorithms are strongly needed.

Results

We design and implement a space-efficient algorithmic framework that solves a number of core primitives in unsupervised metagenomic clustering using just the bidirectional Burrows-Wheeler index and a union-find data structure on the set of reads. When run on a sample of total length n, with m reads of maximum length ? each, on an alphabet of total size σ, our algorithms take O(n(t+logσ)) time and just 2n+o(n)+O(max{? σlogn,K logm}) bits of space in addition to the index and to the union-find data structure, where K is a measure of the redundancy of the sample and t is the query time of the union-find data structure.

Conclusions

Our experimental results show that our algorithms are practical, they can exploit multiple cores by a parallel traversal of the suffix-link tree, and they are competitive both in space and in time with the state of the art.
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5.
Plant height is one of the most important agronomic traits of plant architecture, and also affects grain yield in rice. In this study, we obtained a novel dwarf rice mutant of japonica variety Shennong9816, designated Shennong9816d. Compared with wild-type, the Shennong9816d plant height was significantly reduced, and the tiller number significantly increased. Additionally, the mutant yield component, and the number of large and small vascular bundles were significantly decreased compared with wild-type. Genetic analysis indicated that the Shennong9816d dwarf phenotype was controlled by a recessive nuclear gene, while the plant was shown to be sensitive to gibberellic acid. Using a large F2 population derived from a cross between Shennong9816d and the indica rice variety Habataki, the osh15(t) gene was fine mapped between RM20891 and RM20898, within a physical distance of 73.78 kb. Sequencing analysis showed that Shennong9816d carries a 1 bp mutation and a 30 bp insertion in the OSH15 region. These results suggest that osh15(t) is a novel allelic mutant originally derived from japonica variety Shennong9816, which may be useful for introducing the semi-dwarf phenotype to improve plant architecture in rice breeding practice.  相似文献   

6.
The time evolution of Van Kampen waves is analyzed by solving the kinetic equation for the plasma particle distribution function. The damping law for Van Kampen waves, ∝Bexp(?Ct)3), obtained earlier from qualitative considerations, is confirmed. The values of the constants B and C are found, and comparison with the previous analysis is made.  相似文献   

7.
Nonquasineutral electron current filaments with the azimuthal magnetic field are considered that arise due to the generation of electron vorticity in the initial (dissipative) stage of evolution of a current-carrying plasma, when the Hall number is small (σB/en e c ? 1) because of the low values of the plasma conductivity and magnetic field strength. Equilibrium filamentary structures with both zero and nonzero net currents are considered. Structures with a zero net current type form on time scales of t < t sk = (r 0ω pe /c)2 t st, where t sk is the skin time, t st is the typical time of electron-ion collisions, and r 0 is the radius of the filament. It is shown that, in nonquasineutral filaments in which the current is carried by electrons drifting in the crossed electric (E r ) and magnetic (B θ) fields, ultrarelativistic electron beams on the typical charge-separation scale r B = B/(4πen e ) (the so-called magnetic Debye radius) can be generated. It is found that, for comparable electron currents, the characteristic electron energy in filaments with a nonzero net current is significantly lower than that in zero-net-current filaments that form on typical time scales of t < t sk. This is because, in the latter type of filaments, the oppositely directed electron currents repel one another; as a result, both the density and velocity of electrons increase near the filament axis, where the velocities of relativistic electrons are maximum. Filaments with a zero net current can emit X rays with photon energies ? ω up to 10 MeV. The electron velocity distributions in filaments, the X-ray emission spectra, and the total X-ray yield per unit filament length are calculated as functions of the current and the electron number density in the filament. Analytical estimates of the characteristic lifetime of a radiating filament and the typical size of the radiating region as functions of the plasma density are obtained. The results of calculations are compared with the available experimental data.  相似文献   

8.
On-line control over the plasma density in tokamaks (especially, in long-term discharges) requires reliable measurements of the averaged plasma density. For this purpose, a new method of density measurements—a pulsed time-of-flight plasma refractometry—was developed and tested in the T-11M tokamak. This method allows one to determine the averaged density from the measured time delay of nanosecond microwave pulses propagating through the plasma. For an O-wave, the measured time delay is proportional to the line-averaged density and is independent of the density profile (f?f p ) τok o \(\tfrac{1}{{f^2 }}\mathop \smallint \limits_l \) N(x dx. A similar formula is valid for an X-wave: τX = ≈ k x \(\tfrac{{f^2 + f_c^2 }}{{(f^2 - f_c^2 )^2 }}\mathop \smallint \limits_l \) N(x)dx. Here, f is the frequency of the probing wave, f p is the plasma frequency, l= 4 a is the path length for two-pass probing in the equatorial plane, a is the plasma minor radius, k O and k X are numerical factors, f c is the electron-cyclotron frequency at the axis of the plasma column, and f p ?f c , f. Measurements of the time delay provide the same information as plasma interferometry, though they do no employ the effect of interference. When the conditions f p ?f c , f are not satisfied, the measured time delay depends on the shape of the density profile. In this case, in order to determine the average density regardless of the density profile, it is necessary to perform simultaneous measurements at several probing frequencies in order to determine the average density. In ITER (Bt ~ 5T), a spectral window between the lower and upper cutoff frequencies in the range of 50–100 GHz can be used for pulsed time-of-flight X-wave refractometry. This appreciably simplifies the diagnostics and eliminates the problem of the first mirror. In this paper, the first results obtained in the FTU tokamak with a prototype of the ITER pulsed time-of-flight refractometer are presented. The geometry and layout of experiments similar to the planned ITER experiments are described. The density measured by pulsed time-of-flight refractometry is shown to agree well with the results obtained in FTU with a two-frequency scanning IR interferometer. The results obtained are analyzed, and the future experiments are discussed.  相似文献   

9.
The formation of a peaked bell-shaped profile of the electron density n e (r) in the T-11M tokamak (B t=1 T, R/a = 0.7/0.2 m, I p = 100 kA, t shot ≤ 300 ms, Li and C limiters) was observed in Li experiments carried out in the near-plateau collisionality regime (the collisionality parameter at one-half of the minor radius was v* ≥ 0.5) under the conditions of low hydrogen recycling and intense hydrogen influx from the plasma edge. It is well known that peaked n e (r) profiles are observed in collisionless regimes at v* values as low as 10?1–10?2 or in impurity-contaminated discharges, in which this effect can be attributed to the impurity accumulation on the plasma column axis. Moreover, a bell-shaped n e (r) profile in discharges with low n e can result from the ionization of hydrogen atoms at the column axis, where they arrive from the plasma edge due to cascade charge-exchange. In quasi-steady lithium discharges in T-11M, however, peaked n e (r) profiles were observed at a relatively high central electron density n e (0) and relatively high collision frequency, such that the influence of impurities on the n e (r) profile could be ignored (Z eff = 1.1±0.1). To explain this effect, one has to assume that the pinching of hydrogen ions in T-11M is anomalous. The lower estimate of the observed pinch velocity is 4 ± 1 m/s, which is three to five times higher than the velocity of the neoclassical (Ware) pinch, characteristic of these conditions. The work is devoted to the experimental study of this effect.  相似文献   

10.
The effects of t-haplotypes on embryonic morphology in house mouse Mus musculus were described. Lethal mutations, t-haplotypes, in homozygotes induce abnormal embryogenesis and zygotic death at different developmental stages, which depends on the time of their action in ontogeny. Death commonly occurs in the first semester of pregnancy from the morula to the mature embryo stage (day 9–10), and the embryogenetic abnormalities and their timing were Specific for each t-haplotype. Such mutations were analyzed to identify the gene products (proteins) affecting the nervous system development. The t-complex proved to contain tandem repeats coding for regulatory factors modulating the expression of specific structural genes in mouse neurons.  相似文献   

11.
Poa secunda Presl. is one of the few native perennial bunchgrasses in the Intermountain West to persist and co-occur with the invasive annual Bromus tectorum L. following widespread overgrazing and frequent wildfires. To identify potential mechanisms responsible for the co-occurrence of P. secunda with B. tectorum, respiration rates (\(R_{\operatorname{CO} _2 }\)) of eight populations were measured at 10, 20, and 30°C on laboratory-grown plants by infrared gas analysis. In addition, \(R_{\operatorname{CO} _2 }\) and metabolic heat rates (q) of nine field-grown populations were measured at 10 and 20°C using calorimetry on eight dates over a growing season to compare temperature-dependent physiology of P. secunda with previous published patterns for B. tectorum. Laboratory respiration rates of P. secunda populations suggest considerable intraspecific variation in physiological response to temperature. Changes in slope for \(R_{\operatorname{CO} _2 }\) and q over the growing season were steeper at 20 than at 10°C , suggesting that P. secunda populations are more capable of maintaining steady rates of metabolism at low than at high temperatures. However, growth rates of P. secunda were relatively lower than those for B. tectorum at 10°C. Calculations of growth rates and efficiency of converting substrate carbon into biomass of P. secunda consistently remained positive, while those for B. tectorum rapidly declined at temperatures above 10°C. These data suggest that P. secunda co-occurrence with B. tectorum over a broad range of plant communities in the Intermountain West may be partially explained by having a similar ability to maintain positive and stable growth rate at low temperature. In addition, the greater ability of P. secunda to maintain growth rates and metabolic efficiency at higher temperatures than B. tectorum may allow this perennial grass to compensate for the greater relative growth rates of B. tectorum at low temperature.  相似文献   

12.
There are two close empirical scalings, namely, the T-11 and neo-Alcator ones, that provide correct estimates for the energy confinement time in tokamaks in ohmic heating regimes in the linear part of the dependence τ E (\(\bar n_e \)) in the range of low values of \(\bar n_e \) and 〈ν e * 〉 ≤ 1. The similar character of electron energy confinement in this range, which expands with increasing magnetic field B 0, has stimulated the search for dimensionless parameters and simple physical models that would explain the experimentally observed dependences χ e ~ 1/n e and τ Ee \(\bar n_e \). In 1987, T. Okhawa showed that the experimental data were satisfactorily described by the formula χe = (c 2 pe 2 )ν e /qR, in deriving of which the random spatial leap along the radius r on the electron trajectory was assumed to be the same as that in the coefficient of the poloidal field diffusion, while the repetition rate of these leaps was assumed to be ν e /qR. In 2004, J. Callen took into account the decrease in the fraction of transient electrons with increasing toroidal ratio ? = r/R and corrected the coefficient c 2 pe 2 in Okhawa equation by the factor σ Sp neo . If one takes into account this correction and assumes that the frequency of the stochastic process is equal to the reciprocal of the half-period of rotation of a trapped electron along its banana trajectory, then the resulting expression for χe will coincide with the T-11 scaling: χ e an ∞ ?1.75(T e /A i )0.5/(n e qR) at A i = 1. If the same stochastic process also involves ions, it may result in the opening of the orbit of a trapped ion at the distance ~(c pe )(m i /m e )1/4. In this case, the calculated coefficient of electron and ion diffusion D is close to D an ≈ χ e an /2.  相似文献   

13.

Objectives

To enhance acid tolerance of Candida glabrata for pyruvate production by engineering AMP metabolism.

Results

The physiological function of AMP deaminase in AMP metabolism from C. glabrata was investigated by deleting or overexpresseing the corresponding gene, CgAMD1. At pH 4, CgAMD1 overexpression resulted in 59 and 51% increases in biomass and cell viability compared to those of wild type strain, respectively. In addition, the intracellular ATP level of strain Cgamd1Δ/CgAMD1 was down-regulated by 22%, which led to a 94% increase in pyruvate production. Further, various strengths of CgAMD1 expression cassettes were designed, thus resulting in a 59% increase in pyruvate production at pH 4. Strain Cgamd1Δ/CgAMD1 (H) was grown in a 30 l batch bioreactor at pH 4, and pyruvate reached 46.1 g/l.

Conclusion

CgAMD1 overexpression plays an active role in improving acid tolerance and pyruvate fermentation performance of C. glabrata at pH 4.
  相似文献   

14.
P. B. M. Walker (1954) and H. C. Longuet-Higgins (quoted by Walker), as well as O. Scherbaum and G. Rasch (1957), made the first attempts towards a mathematical study of the age distribution in a cellular population. It was H. Von Foerster (1959), however, who derived the complete differential equation for the age density function,n(t, a). His equation is obtained from an analysis of the infinitesimal changes occurring during a time elementdt in a group of cells with ages betweena anda+da. The behavior of the population is determined by a quantity λ which we call the loss function. In this paper a rigorous discussion of the Von Foerster equation is presented, and a solution is given for the special case when λ depends, ont (time) anda (age) but not on other variables (such asn itself). It is also shown that the age density,n(t, a), is completely known only if the birth rate,α(t), and the initial age distribution, β(a), are given as boundary conditions. In Section II the steady state solution and some plausible forms of intrinsic loss functions (depending ona only) are discussed in view of later applications.  相似文献   

15.
The organism-in-its-environment is recognized as the basic unit of analysis when dealing with living beings. This paper seeks to define the fundamental implications of the concept of the organism-in-its-environment in terms of the biosemiotic concept of human distributed cognition. Human distributed cognition in a biosemiotic context is defined as the ability of a self-referencing organism-in-its-environment to interact with its environment to satisfy its physiological (internal and external) and social needs to survive and sustain itself. The ontogenetic development of the organism-in-its-environment serves as the backdrop to discover the implications of distributed cognition that have general applicability in organisms, but in this paper, are made relevant to human beings.  相似文献   

16.
In Moroccan Arabic, like in many other Afroasiatic languages, certain nouns may have more than one plural form. For instance, t ? es ? wera ‘photo’ has plurals t ? s ? awer and t ? s ? werat. However, their diminutive systematically resorts to -at suffixation in the plural. The aim of this study is twofold. First, it presents an interface approach which aims to determine the structural location of number and capture the empirical contrast between broken and sound plurals. It is argued that the sound plurals are associated with the standard Num projection, whereas the broken plurals are associated lower in the structure with the n projection. Second, it provides a templatic analysis of the diminutive formation, showing that the diminutive and the internal plural markers compete for the same templatic position. External evidence for the analysis is drawn from the phenomenon of emphasis spread. The nP is presented as the maximal domain of emphasis spread in nouns.  相似文献   

17.
This study aimed to disclose the acid tolerance mechanism of Lactobacillus plantarum by comparing L. plantarum ZDY 2013 with the type strain L. plantarum ATCC 8014 in terms of cell membrane, energy metabolism, and amino acid metabolism. L. plantarum ZDY 2013 had a superior growth performance under acidic condition with 100-fold higher survival rate than that of L. plantarum ATCC 8014 at pH 2.5. To determine the acid tolerance physiological mechanism, cell integrity was investigated through scanning electron microscopy. The study revealed that L. plantarum ZDY 2013 maintained cell morphology and integrity, which is much better than L. plantarum ATCC 8014 under acid stress. Analysis of energy metabolism showed that, at pH 5.0, L. plantarum ZDY 2013 enhanced the activity of Na+/K+-ATPase and decreased the ratio of NAD+/NADH in comparison with L. plantarum ATCC 8014. Similarly, amino acid metabolism of intracellular arginine, glutamate, and alanine was improved in L. plantarum ZDY 2013. Correspondingly, the activity of arginine deiminase and glutamate decarboxylase of L. plantarum ZDY 2013 increased by 1.2-fold and 1.3-fold compared with L. plantarum ATCC 8014 in acid stress. In summary, it is demonstrated that the special physiological behaviors (integrity of cell membrane, enhanced energy metabolism, increased amino acid and enzyme level) of L. plantarum ZDY 2013 can protect the cells from acid stress.  相似文献   

18.
Delphacodes kuscheli establish mutualistic relationship with yeast-like symbionts (YLS) that live in the fat body and are necessary for host survival and reproduction. We estimated for a host of age t, its body weight, W(t), and the number of YLS per host, YLS(t). The host body weight was calculated as: W(t)?=?Lm/[1+ e (d–kt)], (Lm?=?the maximum observed weight, and d and k are constants), and the fat body was considered a fixed proportion of W(t). We calculated the number of YLS per unit host body mass: α(t)?=?YLS(t)/W(t). We also calculated the number of YLS per host, cYLS(t), and analyzed the pattern of variation in both sexes adapting the expression of the logistic model: cYLS(t)?=?KNoert/K+(ert -1)No, (No?=?initial number of YLS, r?=?intrinsic per capita rate of natural increase, and K?=?variable carrying capacity). In females the carrying capacity varied according to a constant proportion of the host’s weight: K(t)?=?αW(t). In males α(t) was considered a decreasing function of the host age: K(t)?=?α(t)W(t). The coefficients No, α, and r were subjected to parameterization. We found that the patterns of W(t) and YLS(t) of D. kuscheli were similar to other planthoppers. In females YLS increased up to the adult stage and then remained almost constant, varying similarly to individual weight. In males YLS increased up to the 5th instar nymph as the individual weight did, but the number of YLS decreased in the adult stage and the correlation was not so good. The calculated number of YLS per host matches reasonably well with the number estimated experimentally both in females and males. This is the first study that quantified and modeled the dynamics of YLS endosymbionts in a Neotropical planthopper pest. The models will be used in future studies for better understand the experimental reduction of YLS in young nymphal stages.  相似文献   

19.
The first cytogenetic comparisons of five snapper species from Thailand were presented here. Renal cell samples were taken from blacktail snapper (Lutjanus fulvus), five lined snapper (L. quinquelineatus), dory snapper (L. fulviflamma), brownstripe red snapper (L. vitta), and mangrove red snapper (L. argentimaculatus). The mitotic chromosome preparation was prepared directly from kidney cells. Conventional staining and Ag-NOR banding techniques were applied to stain the chromosomes. The results exhibited that all five snapper species have the diploid chromosome numbers of 2n = 48 and the fundamental numbers (NF) of 48. The presences of large, medium, and small telocentric chromosomes were 22-24-2, 24-20-4, 36-10-2, 28-16-4 and 36-10-2, respectively. The Ag- NORs banding technique provides the pair of nucleolar organizer regions (NORs) at subcentromeric region of the long arm of the respective telocentric chromosome pairs 9, 1, 3, 4 and 9. Their karyotype formulas is as follows: L. fulvus (2n = 48): L 22 t + M 24 t + S 2 t , L. quinquelineatus (2n = 48): L 24 t + M 20 t + S 4 t , L. fulviflamma (2n = 48): Lt36 + Mt10 + St2, L. vitta (2n = 48): L 28 t + M 16 t + S 4 t , and L. argentimaculatus (2n = 48): L 36 t + M 10 t + S 2 t .  相似文献   

20.
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