Comparative efficacy of clove oil and other chemicals in anaesthetization of Pomacentrus amboinensis, a coral reef fish

The efficacy of quinaldine, benzocaine, MS-222, 2-phenoxyethanol and clove oil was compared for anaesthetizing settlement stage Pomacentrus amboinensis , a frequently studied coral reef fish. Induction to anaesthesia, behaviour during anaesthesia, recovery times and survival rates of fish treated with the different chemicals were compared. Clove oil was only marginally less effective than quinaldine and was more effective than other chemicals tested, except at high concentrations. In addition, fish exposed to clove oil exhibited a much calmer induction to anaesthesia than fish exposed to quinaldine. Therefore, clove oil may be an effective alternative to quinaldine as a fish anaesthetic. Recovery time after anaesthesia with clove oil was two to three times longer than recovery from other chemicals, a desirable charcteristic for use in field studies. Survival rates were excellent for all chemicals.     

Immunohistochemical localization of glucagon, substance-P and vasoactive intestinal peptide in gastrointestinal tract mucosa of zander

The distribution of specific immunoreactivities in the digestive tract of zander Stizostedion lucioperca , using antisera against substance P (sub P), glucagon and vasocative intestinal peptide (VIP), indicated immunoreactivities against all antisera in the glandular cells. The immunoreactivity was less by comparison in the cells of the lamina epithelialis. The most dense regions of immunoreactive cells were the fundus and pylorus of the stomach, the anterior intestine and the pyloric caeca. Immunoreactivity was determined in the nerves belonging to the myenteric plexus and muscle tissue.     

In vitro evaluation of the probiotic properties of human intestinal Bifidobacterium species and selection of new probiotic candidates

Aims: The aim of this work was to identify and select new probiotic strains among majority intestinal bifidobacterial species from healthy Spaniards. Methods and Results: One hundred and eighty isolates belonging to seven Bifidobacterium species were subjected to a subtractive system of in vitro analysis addressing beneficial and undesirable traits. Approx. 45% of the isolates were able to grow in 2% bovine bile, and about 20% of these grew at pH 3·5. Undesirable enzymatic activities, such as α‐chymotrypsin, β‐glucuronidase and N‐acetyl‐β‐glucosaminidase were not detected. Atypical antibiotic resistances were not observed, except for tetracycline resistance in a single strain. Intestinal pathogens were inhibited to some extent by all analysed strains. All selected strains adhered to human epithelial cells in a strain‐dependent manner, and none was able to degrade pig mucin. Conclusions: Based on these in vitro analyses, strains of Bifidobacterium catenulatum, Bifidobacterium longum and Bifidobacterium pseudocatenulatum are here proposed as new probiotic candidates. Significance and Impact of the Study: Although in vivo analyses are still needed, these strains belonging to unusual species in the portfolio of probiotic suppliers are thought to be more appropriated than those currently in use, as they show desirable properties and are preponderant among human intestinal populations.     

The effects of geomagnetic storms on proteinase and glycosidase activities in fish intestinal mucosa

It has been demonstrated that the glycosidase activity of cyprinoid fishes (carp and crucian carp) exposed to a geomagnetic storm for up to 20 h considerably decreases; however, the proteinase activity is weakly altered (a statistically significant decrease in the enzyme activity has been observed only in fasting fish). An in vitro study of the effects of individual half hour intervals of the geomagnetic storm that correspond to the main and recovery phases on the same enzyme activities demonstrates the opposite trend. Independently of the experimental conditions, geomagnetic storms have been shown to influence the enzyme system of fasting fish negatively.     

Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice

This study is the first to use a metagenomics approach to characterize the phylogeny and functional capacity of the canine gastrointestinal microbiome. Six healthy adult dogs were used in a crossover design and fed a low-fiber control diet (K9C) or one containing 7.5% beet pulp (K9BP). Pooled fecal DNA samples from each treatment were subjected to 454 pyrosequencing, generating 503 280 (K9C) and 505 061 (K9BP) sequences. Dominant bacterial phyla included the Bacteroidetes/Chlorobi group and Firmicutes, both of which comprised ∼35% of all sequences, followed by Proteobacteria (13–15%) and Fusobacteria (7–8%). K9C had a greater percentage of Bacteroidetes, Fusobacteria and Proteobacteria, whereas K9BP had greater proportions of the Bacteroidetes/Chlorobi group and Firmicutes. Archaea were not altered by diet and represented ∼1% of all sequences. All archaea were members of Crenarchaeota and Euryarchaeota, with methanogens being the most abundant and diverse. Three fungi phylotypes were present in K9C, but none in K9BP. Less than 0.4% of sequences were of viral origin, with >99% of them associated with bacteriophages. Primary functional categories were not significantly affected by diet and were associated with carbohydrates; protein metabolism; DNA metabolism; cofactors, vitamins, prosthetic groups and pigments; amino acids and derivatives; cell wall and capsule; and virulence. Hierarchical clustering of several gastrointestinal metagenomes demonstrated phylogenetic and metabolic similarity between dogs, humans and mice. More research is required to provide deeper coverage of the canine microbiome, evaluate effects of age, genetics or environment on its composition and activity, and identify its role in gastrointestinal disease.     

Characterization of the ultrastructure of the gastrointestinal tract mucosa, stomach contents and liver enzyme activity of the pinfish during development

Carnivorous juveniles (<16 mm L_S) of pinfish Lagodon rhomboides apparently lacked gastric glands in the stomach while larger fish, intermediates (30-33 mm L_S) and herbivorous adults (>80 mm L_S) had numerous gastric glands. Two cell types were identified in the gastric glands of larger fish: mucous secreting cells and secretory cells which had ultrastructure features typical of digestive enzymes and acid secretion. Lipid absorption occurred throughout the caeca and intestine in all sizes of fish. Microvilli found on the rectal epithelial cells of the intermediate and adult pinfish occurred on stalks and were possibly associated with water reabsorption. Liver enzyme activities changed in small fish (26–39 mm L_S) compared to the adult fish. Alanine amino transferase (ALT) and fructose diphosphotase (FDP) activities declined while pyruvate kinase (PK) activities increased significantly. These changes were consistent with a change in diet from a carnivorous (high protein) diet in juveniles to an omnivorous (lower protein) diet determined by stomach content analyses.     

Flood effects on trophic linkages of selected fish species in the littoral zone of the St Lucia estuarine system,South Africa

The St Lucia Estuary, a UNESCO World Heritage Site, has experienced prolonged mouth closure since 2002. Until recently it was hypersaline, but heavy rainfall between October 2010 and January 2011 led to a large overall decrease in salinity. A stable isotope study was conducted in March 2011 on selected fish species from the nearshore environments at Charter's Creek and the estuary mouth region to determine the influence of flooding events on their diet. Oreochromis mossambicus, the dominant fish species at both sites, had a generalised diet and occupied the lowest trophic level both before and after flooding. Monodactylus argenteus, Leiognathus equula and Gerres acinaces from the mouth area displayed a largely zooplanktivorous diet and showed some changes in prey species between drought and post-flood conditions.     

A role for cyanide, derived from ethylene biosynthesis, in the development of stress symptoms

Cyanide is formed as a co-product of ethylene during the oxidation of 1-aminocyclo-propane-1-carboxylic acid (ACC) catalyzed by ACC oxidase. A toxic or regulatory function for cyanide in plant metabolism remains controversial. However, recent studies on the mode of action of auxin herbicides in sensitive plants suggest that the accumulation of tissue cyanide, derived ultimately from herbicide-stimulated ACC synthesis, is implicated in the induction of herbicide phytotoxicity. Furthermore, increases in cyanide levels have been observed during the formation of necrotic lesions in tobacco mosaic virus-infected tobacco leaves. It thus appears worthwhile to elucidate in more detail a possible role for cyanide in the induction of cell death under stress conditions which coincide with a strong stimulation of ethylene biosynthesis.     

Effect of oral polyamine supplementation pre-weaning on piglet growth and intestinal characteristics

A high proportion of piglets fail to adapt to the changing composition of their diet at weaning, resulting in weight loss and increased susceptibility to pathogens. Polyamines are present in sow milk and promote neonatal maturation of the gut. We hypothesised that oral spermine and spermidine supplementation before weaning would increase piglet growth and promote gastrointestinal development at weaning. In Experiment One, one pair of liveweight (LW)-matched piglets per litter from first and third lactation sows received 2 ml of a 0 (Control) or 463 nmol/ml spermine solution at 14, 16, 18, 20 and 22 days of age (n=6 piglets/treatment per parity). Villus height and crypt depth in the duodenum and jejunum were measured at weaning (day 23 postpartum). In Experiment Two, piglets suckling 18 first and 18 third lactation sows were used. Within each litter, piglets received 2 ml of either water (Control), 463 nmol/ml spermine solution or 2013 nmol/ml spermidine solution at 14, 16, 18, 22 and 24 days of age (n=54 piglets/treatment per sow parity). Piglets were weighed individually at 14, 18, 24 (weaning) and 61 days of age. In Experiment One, oral spermine supplementation resulted in a 41% increase in villus height, a 21% decrease in crypt depth and 79% decrease in the villus height : crypt depth ratio compared with control piglets (P<0.01). In Experiment Two, spermine and spermidine-supplemented piglets suckling first lactation sows grew faster (P<0.05) between days 14 and 18 postpartum than control piglets: 0.230±0.011 and 0.227±0.012 v. 0.183±0.012 kg/day, respectively. Spermine supplementation tended (P<0.1) to increase piglet LW gain from weaning to day 37 post-weaning compared with control piglets (0.373±0.009 v. 0.341±0.010 kg/day). In conclusion, spermine supplementation increased villus height at weaning, and appears to have the potential to improve the pre- and post-weaning growth of conventionally weaned piglets.     

Aquatic animals promote antibiotic resistance gene dissemination in water via conjugation: Role of different regions within the zebra fish intestinal tract,and impact on fish intestinal microbiota

The aqueous environment is one of many reservoirs of antibiotic resistance genes (ARGs). Fish, as important aquatic animals which possess ideal intestinal niches for bacteria to grow and multiply, may ingest antibiotic resistance bacteria from aqueous environment. The fish gut would be a suitable environment for conjugal gene transfer including those encoding antibiotic resistance. However, little is known in relation to the impact of ingested ARGs or antibiotic resistance bacteria (ARB) on gut microbiota. Here, we applied the cultivation method, qPCR, nuclear molecular genetic marker and 16S rDNA amplicon sequencing technologies to develop a plasmid‐mediated ARG transfer model of zebrafish. Furthermore, we aimed to investigate the dissemination of ARGs in microbial communities of zebrafish guts after donors carrying self‐transferring plasmids that encode ARGs were introduced in aquaria. On average, 15% of faecal bacteria obtained ARGs through RP4‐mediated conjugal transfer. The hindgut was the most important intestinal region supporting ARG dissemination, with concentrations of donor and transconjugant cells almost 25 times higher than those of other intestinal segments. Furthermore, in the hindgut where conjugal transfer occurred most actively, there was remarkable upregulation of the mRNA expression of the RP4 plasmid regulatory genes, trbBp and trfAp. Exogenous bacteria seem to alter bacterial communities by increasing Escherichia and Bacteroides species, while decreasing Aeromonas compared with control groups. We identified the composition of transconjugants and abundance of both cultivable and uncultivable bacteria (the latter accounted for 90.4%–97.2% of total transconjugants). Our study suggests that aquatic animal guts contribute to the spread of ARGs in water environments.     

The effects of starvation and refeeding on intestinal cell proliferation in the mouse

The effects of starvation and refeeding on intestinal cell proliferation were studied in four sites of the mouse intestine. Control mice were studied at different times of day in order to compensate for any circadian variations in proliferation. A circadian rhythm in crypt cell production rate was observed in all the sites of the small intestine and colon, and this rhythm appeared to be entrained to the food intake. The fractional crypt cell production rate decreased in all sites of the intestine after 24 h starvation, and remained low until 9 h after refeeding, when there was a marked increase in the crypt cell production rate of all the small intestinal sites, especially the proximal sites. There was little change in colonic crypt cell production rate until 12 h after refeeding, when there was a large increase in cell production. The crypt cell production rate of all sites then returned to control values for the remainder of the investigation. Crypt cell number decreased after refeeding and villus cell number increased, however a similar effect was observed in the control animals, nevertheless the changes in villus cell population of the refed mice occurred before any increase in crypt cell production, suggesting that cell migration from crypt to villi is not immediately dependent on cell proliferation.     

Quantitative analysis of the intestinal bacterial community in one- to three-week-old commercially reared broiler chickens fed conventional or antibiotic-free vegetable-based diets

AIMS: To explore the effect of drug-free poultry production on the intestinal microflora of broiler chickens, the bacterial community of this environment was quantitatively profiled in both conventionally reared birds and birds reared without antibiotic growth promotants (AGPs) on a vegetable-based diet. METHODS AND RESULTS: Quantitative, real-time PCR with group-specific 16S rDNA primer sets was used to enumerate the abundance of the following chicken gastrointestinal (GI) tract phylogenetic groups: the Clostridium leptum-Faecalibacterium prausnitzii subgroup (Clostridium genus cluster IV), the Clostridium coccoides - Eubacterium rectale subgroup (Clostridium cluster XIVa and XIVb), the Bacteroides group (including Prevotella and Porphyromonas), Bifidobacterium spp., the Enterobacteriaceae, the Lactobacillus group (including the genera Leuconostoc, Pediococcus, Aerococcus and Weissella), the Clostridium perfringens subgroup (Clostridium cluster I), Enterococcus spp., Veillonella spp., Atopobium spp., Campylobacter spp. and the domain Bacteria. A species-specific 5'-nuclease (Taqman) assay was also employed to specifically assess Cl. perfringens abundance. Ten birds were sampled from each of two commercial chicken houses, one in which feed was supplemented with AGPs and exogenous animal protein, and the other vegetable-based and drug-free, at 7, 14 and 21 days of age. The ileal community was dominated by two large populations, the lactobacilli and the Enterobacteriaceae, with those taxa much more numerous in drug-free vegetable-based diet fed birds than those conventionally reared at the 7- and 14-day time periods. The progressive changes in microflora in both the conventional and drug-free caeca were similar to each other, with the Enterobacteriaceae sequences dominating at day 7, but being replaced by obligate anaerobe signature sequences by day 14. Of note was the finding that all the day 14 and day 21 replicate caecal samples from the drug-free house were positive for Campylobacter spp. averaging >10(8) 16S rDNA gene copies per gram wet weight. CONCLUSIONS: Quantitative, real-time PCR indicates that the effects of drug-free rearing on the chicken GI tract microbial community are most pronounced in the ileal region, but AGPs may be important in controlling Campylobacter colonization of the caecum. SIGNIFICANCE AND IMPACT OF THE STUDY: A quantitative taxonomic understanding of the shifting microbial ecology of the broiler chicken gut microbiota is important in the light of AGP withdrawal. AGP withdrawal has occurred in response to concerns over the transfer of antimicrobial-resistant bacteria to humans via the food production chain.     

Causes and consequences of human induced impacts on a ubiquitous estuary-dependent marine fish species

Decreasing populations of common estuary-associated marine fishes are being documented globally and red flags associated with such declines are often ignored due to the high relative abundance of these species when compared to more rare and threatened taxa. The Cape stumpnose Rhabdosargus holubi (Steindachner 1881) is an abundant and widespread southern African sparid that is dependent on estuaries as a primary nursery area. Historical and current information on the species is comprehensive and the accumulated evidence strongly suggests that this ubiquitous fish is under pressure, mainly due to degradation of estuaries and associated catchments, increasing fishing pressures from recreational and subsistence anglers, habitat loss relating to reduced submerged macrophyte areas in many systems, industrial and agricultural pollution, infrastructural developments in and around estuaries, and climate change. In particular, the temporary loss of Lake St Lucia, which accounts for approximately 50% of the estuarine surface area in South Africa, has drastically reduced the nursery area availability for R. holubi on the subcontinent. Overall we present strong evidence to support the hypothesis that present-day stocks of R. holubi are much smaller than those in the pristine state and that urgent management measures need to be considered and implemented to prevent current depleted populations of the species from declining further.     

Measuring the gut microbiome in birds: Comparison of faecal and cloacal sampling

The gut microbiomes of birds and other animals are increasingly being studied in ecological and evolutionary contexts. Numerous studies on birds and reptiles have made inferences about gut microbiota using cloacal sampling; however, it is not known whether the bacterial community of the cloaca provides an accurate representation of the gut microbiome. We examined the accuracy with which cloacal swabs and faecal samples measure the microbiota in three different parts of the gastrointestinal tract (ileum, caecum, and colon) using a case study on juvenile ostriches, Struthio camelus, and high‐throughput 16S rRNA sequencing. We found that faeces were significantly better than cloacal swabs in representing the bacterial community of the colon. Cloacal samples had a higher abundance of Gammaproteobacteria and fewer Clostridia relative to the gut and faecal samples. However, both faecal and cloacal samples were poor representatives of the microbial communities in the caecum and ileum. Furthermore, the accuracy of each sampling method in measuring the abundance of different bacterial taxa was highly variable: Bacteroidetes was the most highly correlated phylum between all three gut sections and both methods, whereas Actinobacteria, for example, was only strongly correlated between faecal and colon samples. Based on our results, we recommend sampling faeces, whenever possible, as this sample type provides the most accurate assessment of the colon microbiome. The fact that neither sampling technique accurately portrayed the bacterial community of the ileum nor the caecum illustrates the difficulty in noninvasively monitoring gut bacteria located further up in the gastrointestinal tract. These results have important implications for the interpretation of avian gut microbiome studies.     

Effect of temperature on the uptake and metabolism of cyanide by weeping willows

Plants' uptake and metabolism of cyanide in response to changes in temperature was investigated. Pre-rooted weeping willows (Salix babylonica L.) were exposed to hydroponic solution spiked with potassium cyanide for 2-3 d. Ten different temperatures were used, ranging from 11 degrees C to 32 degrees C. Cyanide in water, plant tissue, and air was analyzed spectrophotometrically. The results revealed that significant amounts of the applied cyanide were removed from the aqueous solutions in the presence of plants. Small amounts of free cyanide were detected in plant materials in all treatments, but there was no clear trend that showed an increase or decrease in the accumulation in plant material with temperature. The highest cyanide metabolism rate for weeping willows was found at 32 degrees C with a value of 2.78 mg CN/(kg x d), whereas the lowest value was 1.20 mg CN/(kg x d) at ll degrees C. The temperature coefficient, Q10, which is the ratio of metabolism rates at a 10 degrees C difference, was determined for weeping willows to be 1.46. In conclusion, changes in temperature have a substantial influence on the uptake and metabolism of cyanide by plants, but cyanide accumulation does not increase with temperature.     

Vitamin A and vitamin D regulate the microbial complexity,barrier function,and the mucosal immune responses to ensure intestinal homeostasis

Diet is an important regulator of the gastrointestinal microbiota. Vitamin A and vitamin D deficiencies result in less diverse, dysbiotic microbial communities and increased susceptibility to infection or injury of the gastrointestinal tract. The vitamin A and vitamin D receptors are nuclear receptors expressed by the host, but not the microbiota. Vitamin A- and vitamin D-mediated regulation of the intestinal epithelium and mucosal immune cells underlies the effects of these nutrients on the microbiota. Vitamin A and vitamin D regulate the expression of tight junction proteins on intestinal epithelial cells that are critical for barrier function in the gut. Other shared functions of vitamin A and vitamin D include the support of innate lymphoid cells that produce IL-22, suppression of IFN-γ and IL-17 by T cells, and induction of regulatory T cells in the mucosal tissues. There are some unique functions of vitamin A and D; for example, vitamin A induces gut homing receptors on T cells, while vitamin D suppresses gut homing receptors on T cells. Together, vitamin A- and vitamin D-mediated regulation of the intestinal epithelium and mucosal immune system shape the microbial communities in the gut to maintain homeostasis.     

Isolation and characterization of microsatellites in a marine food fish species,golden trevally Gnathanodon specious

The first set of six polymorphic microsatellites was isolated from a partial genomic DNA library of an important marine food fish Gnathanodon specious, and was characterized in 28 unrelated individuals. The allele number ranged from three to 12 with an average of seven/locus; average expected heterozygosity was 0.57 ranging from 0.10 to 0.87, whereas the observed heterozygosity ranged from 0.11 to 0.96 (average: 0.57). All six markers conform to Hardy–Weinberg and linkage equilibria. These markers will be useful for accessing genetic population structure of wild populations and for selective breeding program in fish farms.     

小鼠肠道对壳寡糖的吸收率及吸收成分的影响

目的通过分析壳寡糖在小鼠肠道内的吸收率以及吸收成分,了解肠道对壳寡糖代谢的影响,初步判断壳寡糖的有效生物成分,为壳寡糖生物活性的进一步研究提供必要的实验材料和线索。方法首先用蜗牛酶将壳聚糖水解成聚合度不同的壳寡糖,并通过聚丙烯酰胺凝胶层析柱（Bio-Gel P4凝胶）将不同聚合度的壳寡糖分开,分别收集聚合度为1-3,8-11的壳寡糖,并用异硫氰酸荧光素（FITC）标记,再通过聚丙烯酰胺凝胶层析柱（Bio-Gel P-2/P4）将游离的FITC除去,随后对两组禁食24 h的小鼠分别用FITC标记的大分子量和小分子量的壳寡糖灌胃。1 h后取血清和小肠,经分离水溶成分后,通过荧光分光光度计检测血清样品和肠溶物样品中荧光的强度,进而确定壳寡糖的吸收率和吸收成分。结果通过改变酶解时间,蜗牛酶可以将壳聚糖水解成不同聚合度的壳寡糖。利用Bio-Gel PA聚丙烯酰胺凝胶层析柱可以将不同聚合度的壳寡糖分离成具有一定聚合度范围的壳寡糖。用F1TC标记的大、小分子量的壳寡糖给小鼠灌胃,从血清和肠溶物中均检测到荧光强度,两者比值平均值分别为5.68 ： 1和9.84 ： 1。结论壳寡糖在肠道的吸收率随分子量的减小而增大,除小分子壳寡糖外,吸收成分也包括部分大分子量壳寡糖。     

Isolation and characterization of microsatellite loci in a marine fish species,the tusk (Brosme brosme)

We developed polymerase chain reaction primers for nine dinucleotide microsatellite loci in the marine deep‐sea fish, the tusk (Brosme brosme). All markers were obtained from a partial genomic DNA library, and characterized in 100 unrelated individuals from one putative population. The number of alleles ranged from two to 60 with an average of 15/locus. The observed heterozygosity ranged from 0.020 to 0.826 (average 0.438). Several of the markers amplified multiple alleles from the two other gadoid species tested.     

Effect of pH on the activity of proteinases in intestinal mucosa,chyme, and microbiota of fish from the Cuciurgan reservoir

Proteolytic activities of the intestinal mucosa, chyme, and enteral microbiota have been studied in a wide range of pH values in five fish species from the Cuciurgan reservoir (Moldova). Differences in pH dependence of the intestinal proteinase activity of fish are determined by their feeding type. The maximum activity of proteinases is found in the pumpkinseed Lepomis gibbosus. The minimum activity of proteinases has been demonstrated by the zander Zander lucioperca. The pH optimum of the mucosa and chyme in all fish species (except for the European perch Perca fluviatilis) is 10. The pH optimum of the intestinal microflora varies from 6.0 (in the common carp Cyprinus carpio) to 10 (in the crucian carp Carassius carassius), whereas that in the perch from the Cuciurgan and Rybinsk reservoirs is 7. The majority of fish species, mostly Zander lucioperca and Lepomis gibbosus, are characterized by high proteniase activity of the microbiota, in the pH ranging from 6 to 9. It is assumed that proteinases in the enteral microbiota of fish are able to make up for the relatively low activity of those synthesized by their digestive system in the range of low pH values.