Ichnospecies Teredolites longissimus and Teredinid Body Fossils from the Early Eocene of India—Taphonomic and Palaeoenvironmental Implications

Extensively bored log-grounds with ichnospecies Teredolites longissimus and body fossils of the causative teredinid molluscs are recorded from the Early Eocene subsurface beds of the Cambay Shale Formation at Vastan lignite Mine in western India. Three sizes of T. longissimus observed in Vastan mostly represent animals in different stages of maturity or successive infestation of substrate. Orientation of a majority of small borings suggests that teredinid larvae preferred to initiate boring across the wood grain and subsequently turned to become parallel to grain exhibiting adult boring behavior. Variations in morphology of recovered shells indicate involvement of at least two teredinid taxa in constructing T. longissimus from Vastan—one is identified as Bankia isp. based on pallets and the other remains unidentified and may possibly represent another bankiine, Nototeredo. Evidences of traumatic as well as attritional mortality are noticeable. The xylic substrates having affinity with woods of a modern tree genus Aglaia (Meliaceae) were apparently transported from their natural habitat of an inland moist tropical forest to the coastal region where they were colonized by the teredinid bivalves. The profusely infested wood logs were buried in a near shore lagoon or a tidal flat setting, which is corroborated by the known biota (vertebrate, invertebrate as well as plants) as well as sedimentary facies of the Cambay Shale Formation in Vastan section.     

Bivalve Wood Borings of the Ichnogenus Teredolites Leymerie from the Bohemian Cretaceous Basin (Upper Cretaceous,Czech Republic)

Finds of fossil wood with bivalve wood borings (Teredolites clavatus and T. longissimus) occur in various facies and presumed sedimentary settings of the platform, shallow-marine Bohemian Crectaceous Basin. The basin comprises areas with sandy-dominated sediments, with marl and clay-dominated sediments, areas with predominat sandy-marly rocks, and finally areas dominated by calcareous nearshore sediments. Teredolites clavatus is common in fossil wood of sandstones, originating in beach or deltaic settings; marl and clay-dominated rock frequently bear wood fragments densely bored by Teredolites longissimus. When accompanied by evidence of marine environments as body fossils, glauconite or typical trace fossils, most of the wood fragments are bored. The presence/absence of borings in wood fragments can be considered the most reliable and easily useable criterion of distinction of marine settings in sandy sediments of the margin of the Bohemian Cretaceous Basin.     

Taphonomy of Logs Bored with Teredolites longissimus Kelly and Bromley in the Danian (Lower Paleocene) of West Greenland

The boring Teredolites longissimus Kelly and Bromley is recorded infesting silicified logs in the Fossil Wood Member, Kangilia Formation (Lower Danian, Paleocene) of West Greenland. There are two morphologies of T. longissimus, probably representing two different episodes of invasion of the wood. The initial borings of Morphology 1 are large, deformed to an elliptical section, and confined to a direction of boring parallel to sub-parallel to the wood grain. Morphology 2 borings are less common, narrower and shorter, sinuous, markedly crosscut the grain of the wood and, where preserved intact, retain their circular cross-section. They were a later infestation than Morphology 1. Following the infestation by Morphology 1, the logs were deformed, probably by weight of overburden, and then reworked, when some of them were infested by Morphology 2 producers. Final burial was followed by brittle collapse of some Morphology 2 borings and lithification before further deformation could occur. The occurrence of T. longissimus in deeper water deposits close to a land mass with a steep slope indicates that transport in the marine realm was minimal before waterlogging.     

Host‐specific acrothoracid barnacles on Middle Devonian platyceratid gastropods

Borings, attributed to acrothoracic barnacles, occur on the platyceratid gastropod Naticonema lineatum (Conrad) from the Middle Devonian Hamilton Group of western New York and rarely in specimens as old as the Early Devonian. These latter are the oldest known acrothoracid borings are in the fossil record. The borings are consistently developed as laterally compressed, inequilateral pouches exclusively on these gastropods, commonly as dense infestations.

Naticonema shells yielding borings typically occur associated with partially articulated qrinoid remains, and they are sometimes found attached to crinoids in a manner similar to coprophagous Platyceras. In addition to barnacle borings, Naticonema shells often bear thin encrustations of bryozoans which are usually perforated by these borings but sometimes also overgrow them. Barnacles bored live hosts; gastropods prevented shell penetration by producing cyst‐like secondary secretions of calcite beneath acrothoracid boreholes.

The relative antiquity of these borings and their association with coprophagous platyceratids makes their discovery particularly significant in revealing aspects of the early ecology of barnacles. Attachment to the host commensal gastropods was one of the first successful life modes of these crustaceans prior to their later diversification to other habitats. Mississippian and Pennsylvanian occurrences of similarly bored gastropods demonstrate continuity of the barnacle‐gastropod‐crinoid ecological association from the Middle to Late Paleozoic.     

Demosponges as Substrates: an Example from the Pennsylvanian of North America

The rigid skeletal frameworks of two heliospongid genera from the Bethany Falls Limestone (Pennsylvanian) of Missouri provided suitable sites of attachment for other marine invertebrates in a quiet water environment. A cluster of three horn corals attached apically to one Heliospongia while it was upright. Other horn corals are in lateral contact with ?Coelocladiella fragments and may have attached to fallen specimens. The distribution of acrothoracic barnacle borings and membraniporiform bryozoans on ?Coelocladiella fragments suggest that the sponges were in an upright position when the epizoans lived. Calcareous worm tubes and shell scars of Derbyia are also associated with ?Coelocladiella. The sponges themselves became established on a soft carbonate mud bottom by growing on productacean shells and possibly fallen blades of calcareous algae. Irregularities in their form indicate that conditions were crowded on limited sites of attachment. The organisms in the assemblage are ecologically coherent and in situ. Ecological requirements of associated organisms and sponge morphologies indicate: (1) the energy of the environment was low to moderate, (2) the rate of deposition was slow and (3) the substrate was a soft carbonate mud.     

Non-marine Teredolites from the Middle Eocene of southern England

Middle Eocene, non-marine sediments from southern England contain examples of Teredolites borings in two contrasting palaeoenvironmental settings, viz.: (A) as in situ borings in an allochthonous lignite in an abandoned river channel and (B) as bored logs in cross-bedded fluvial sandstones of probable point-bar origin. The lignite is 0.30 m thick, of which the upper 0.20 m is intensely bored. Rounded pebbles of ?charcoal at its base also show small borings. A log in a fluvial sandstone shows densely-packed. radial club-shaped borings. now filled with sandstone. The wood substrate has subsequently been oxidized away. To our knowledge, this is the first detailed account of Teredolites from an ancient freshwater setting.     

Site selection and behavior of sponge and bivalve borers in shells of the cretaceous oysters exogyra cancellata and pycnodonte mutabilis from delaware,U.S.A

In shells of the oysters Exogyra cancellata and Pycnodonte mutabilis from the Mount Laurel and Marshalltown Formations (Campanian‐Maestrichtian), three‐quarters of all valves bear sponge borings (Entobia isp.) borings and 30% have borings of a lithophagid bivalve (Gastrochaenolites isp.). Non‐random distributions of these euendoliths, documented in this paper, may in part be accounted for by differential survival of sponge and lithophagid larvae and spat in varying circumstances. In addition, exterior shell architectures and post‐mortem orientations of shells are inferred to have prompted active geophobic (antigravity), rugophilic (groove‐seeking), and rheophilic (current‐seeking) behavior that enhanced survivorship of the settling larvae.     

A taphonomic approach to the genetic interpretation of clypeasteroid accumulations from the Miocene of Tarragona,NE Spain

Belaústegui, Z., Nebelsick, J.H., Gibert, J.M. de, Domènech, R. & Martinell, J. 2012: A taphonomic approach to the genetic interpretation of clypeasteroid accumulations from the Miocene of Tarragona, NE Spain. Lethaia, Vol. 45, pp. 548–565. Clypeasteroid accumulations are common in Cenozoic shallow marine sediments, particularly in the Neogene, as they are also in analogue modern environments. In this article, four clypeasteroid accumulations from Miocene (Serravallian) shallow marine carbonates of the El Camp de Tarragona Basin (NE Spain) are studied. Two of them are dominated by flat‐shaped Parascutella, whereas the other two consist exclusively of bell‐shaped Clypeaster. The combination of the taphonomic analysis of the tests, the palaeoecological and taphonomic information provided by the associated fossils, and the stratigraphical and sedimentological context of each one of these beds allows interpreting them as autochthonous/parautochthonous accumulations resulting from in situ reworking in moderate energy settings, except for one that constitutes a true sand dollar coquina deposited by a storm event. This contribution explores the potential of thorough taphonomic analysis of marine invertebrate skeletal concentrations and substantiates the importance of clypeasteroid echinoids as producers of shell beds in the Neogene. □ Clypeasteroids, Echinoids, Miocene, Taphonomy, Tarragona.     

Entobia exogyrarum (Frič, 1883) from the Upper Cretaceous of the Bohemian Cretaceous Basin

The validity of the little-known ichnospecies Entobia exogyrarum (Fri?) is verified. Shells of an oyster, Rhynchostreon suborbiculatum (Lam.), represent the substrate for the sponge borings. The borings occur in many Upper Cenomanian to Middle Turonian localities of the Bohemian Cretaceous Basin. This study revealed that the sponges attacked shells of living oysters. Entobia exogyrarum (Fri?) also represents one of the shallowest occurrences of Entobia borings in the Upper Cretaceous rocks.     

Evidence of Osedax worm borings in Pliocene (∼3 Ma) whale bone from the Mediterranean

Osedax worms subsist entirely on vertebrate skeletons on the seafloor, using root-like tissues to bore into and degrade the bones. Paleontologists have only recently begun to appreciate the possible destructive effect that these worms may have had on the marine vertebrate fossil record and little is known of their evolutionary history. Using microcomputed tomography, we document Osedax-like borings in a fossil whale bone from the Pliocene of Italy and present new data on the borings of extant Osedax worms. The fossil borings are distinguished from those of other known borers and identified as traces of Osedax activity based on diagnostic features. Our results suggest that it is necessary to isolate individual borings for the confident identification of Osedax traces. This is only the second paleogeographic occurrence of Osedax in the fossil record and indicates that by the Pliocene these worms had colonised a large portion of the world's oceans. This is the first evidence for Osedax in the Mediterranean, past or present, and suggests that more species await discovery in this region.     

A New Ichnospecies of Gastrochaenolites Leymerie from the Pleistocene Port Morant Formation of Southeast Jamaica and the Taphonomy of Calcareous Linings in Clavate Borings

The ichnospecies Gastrochaenolites pickerilli isp. nov. is based on ten borings found in a shell of the gastropod Strombus gigas Linné from the Pleistocene (Sangamonian) Port Morant Formation of southeast Jamaica. These borings bear morphological similarities to Gastrochaenolites torpedo Kelly and Bromley but differ from all other Gastrochaenolites ispp. in having prominent and numerous calcareous meniscate structures arrayed adjacent to one side of the boring. These menisci are concave towards the center of the boring and are the remnants of calcareous tubes that lined earlier boreholes, that the boring bivalve treated as part of the lithified substrate when relocating. They are thus evidence of the former positions of borings that, unusually, were breached as the bivalve migrated sideways. Although this was a common behavior for Gastrochaenolites-producing bivalves within this substrate, the reason for it occurring is uncertain.     

Microboring in a Freshwater Fluvial Unionid Bivalve Substrate

Samples of the unionid bivalve Elliptio complanata were collected from the channel of the freshwater Saint John River, from Fredericton, New Brunswick, Canada. Scanning electron microscopy imaging of prepared shell samples revealed an assemblage of microborings. No borings are noted on the periostracum or prismatic shell layers. Boring structures are instead confined to the underlying nacreous aragonitic shell material, together with its associated organic conchiolin layers. Three main styles of boring are encountered, encompassing both predominantly surficial structures and penetrative tubular borings. Surficial structures are represented by a polygonal network on an exposed conchiolin shell layer. The penetrative borings take two forms, one being simple unbranched tubes, steeply aligned (perpendicular to the shell surface) and traversing the full thickness of the nacreous shell layer. The other penetrative boring style, again occurring within the nacreous layer, comprises a complex irregular network of randomly oriented rarely branching tubular borings. Borings generally display diameters of micron scale. Biofilm and extracellular polymeric substances, with bacterial, diatomaceous and filamentous components are also observed, often displaying a close association with both the borings and the conchiolin layers within the shell. The formation of the borings may be attributed to cyanobacteria, cyanophyte or fungal progenitors.     

微泡菌属菌株YPW1和YPW16多糖降解特性分析

【背景】海洋环境中分离到的微泡菌属菌株具有多糖降解能力,在环境中可以作为糖类代谢的重要执行者参与海洋碳循环过程。【目的】测定2株微泡菌属菌株的多糖降解活性,通过与微泡菌属其他菌株基因组比较分析2株菌的多糖降解基因特征。【方法】通过3,5-dinitrosalicylicacid(DNS)定糖法测定多糖降解活性,同时利用高通量测序技术对菌株基因组序列进行测定与组装,并与其他基因组注释结果进行比较分析。【结果】分离得到2株微泡菌属菌株YPW1和YPW16,二者均为潜在新种。结果表明,菌株YPW1能够降解琼胶、褐藻胶、果胶、几丁质、木聚糖、淀粉、普鲁兰等7种多糖,而菌株YPW16仅可降解淀粉和普鲁兰。基因组分析表明,YPW1具有上述7种多糖的降解酶基因,但菌株YPW16只具有淀粉酶与普鲁兰酶降解基因。相较于其他微泡菌属菌株,菌株YPW1多糖降解范围、多糖降解酶基因种类与丰度较高,但菌株YPW16多糖降解范围却较为狭窄。由此可知,多糖降解酶基因在微泡菌属基因组中的分布差异性较大。【结论】本研究为微泡菌属提供了2株潜在的新型菌株资源,为生物多糖降解提供了生化工具,也为研究微泡菌属菌株中多糖降解基...     

Biochemical characteristics of cellulose and a green alga degradation by Gilvimarinus japonicas 12-2T,and its application potential for seaweed saccharification

ABSTRACT

Cellulose is one of the major constituents of seaweeds, but reports of mechanisms in microbial seaweed degradation in marine environment are limited, in contrast to the multitude of reports for lignocellulose degradation in terrestrial environment. We studied the biochemical characteristics for marine cellulolytic bacterium Gilvimarinus japonicas 12-2^T in seaweed degradation. The bacterial strain was found to degrade green and red algae, but not brown algae. It was shown that the bacterial strain employs various polysaccharide hydrolases (endocellulase, agarase, carrageenanase, xylanase, and laminarinase) to degrade seaweed polysaccharides. Electrophoretic analysis and peptide sequencing showed that the major protein bands on the electrophoresis gel were homologous to known glucanases and glycoside hydrolases. A seaweed hydrolysate harvested from the bacterial culture was found useful as a substrate for yeasts to produce ethanol. These findings will provide insights into possible seaweed decomposition mechanisms of Gilvimarinus, and its biotechnological potential for ethanol production from inedible seaweeds.     

Bioerosion in the Miocene Reefs of the northwest Red Sea,Egypt

Macroborings provide detailed information on the bioerosion, accretion and palaeoenvironment of both modern and fossil reefs. Dolomitized reefal carbonates in the Um Mahara Formation exhibit an outstanding example of spatially distributed, well‐preserved bioerosion structures in tropical to subtropical syn‐rift Miocene reefs. Ten ichnospecies belonging to five ichnogenera are identified; three belonging to the bivalve‐boring ichnogenus Gastrochaenolites, three attributed to the sponge‐boring ichnogenus Entobia, and four ichnospecies assigned to three worm‐boring ichnogenera Trypanites, Maeandropolydora and Caulostrepsis. The distribution of the reported borings is strongly linked to the palaeo‐reef zones. Two distinctive ichnological boring assemblages are recognized. The Gastrochaenolites‐dominated assemblage reflects shallower‐marine conditions, under water depths of a few metres, mostly in back‐reef to patch‐reef zones of a back‐reef lagoon. The Entobia‐dominated assemblage signifies relatively deeper marine conditions, mostly in reef core of the fringing Miocene reefs. These ichnological assemblages are attributed herein to the Entobia sub‐ichnofacies of the Trypanites ichnofacies. This ichnofacies indicates boring in hard carbonate substrates (such as corals, rhodoliths, carbonate cements and hardgrounds) during periods of non‐sedimentation or reduced sediment input.     

Ichnofacies and microbial build-ups on Late Miocene rocky shores from Menorca (Balearic Islands), Spain

Angular unconformites between Jurassic and Miocene strata are exposed in the sea cliffs of Cala Cigonya on the northwest coast of Menorca in the Balearic Islands of Spain. The geological discontinuities represent rocky shores on opposite sides of a former headland with 15 m of topographic relief. On the east flank, Jurassic dolomite is overlain by Upper Miocene (Tortonian to Messinian) breccia and laminated limestone. Here, a partially exhumed dolomite surface records Miocene bivalve borings of the ichnospecies Gastrochaenolites torpedo and G. lapidicus that achieved a density of >1,000 borings/m². Other associated traces include sponge borings (Entobia isp.) and polychaete borings (Caulostrepsis isp.). A breccia deposit 0.8 m thick was derived from the underlying dolomite and angular clasts still retain evidence of bivalve borings. Above follows a succession of laminated limestone beds more than 5 m thick, including some levels with dome-shaped stromatolites and other horizons with reworked dolomite clasts. Thin-section analysis of the laminated limestone reveals dark and light couplets 0.2 mm thick consistent with microbial origins. In contrast, the west flank was buried by coarse sandstone and laminated sediments. Here, dwelling structures of regular echinoids (Circolites kotoncensis) are the dominant traces preserved on the dolomite surface, reaching a maximum density of 66 borings/m². Associated borings include Entobia geometrica as well as rare traces of Gastrochaenolites isp. and Trypanites isp. Notable for the absence of a basal Miocene breccia, the west flank is interpreted as a sheltered rocky shore coeval with an exposed rocky shore on the east flank. Today, heavy surf on the north coast of Menorca is related to the Tramontana winds that blow out of Spain during winter months. Similar atmospheric circulation patterns must have prevailed during the Late Miocene, but the replacement of ichnofacies by microbial build-ups resulted from increased salinity during the Messinian crisis.     

The role of modern and fossil cyanobacterial borings in bioerosion and bathymetry

Measurements on modern coral reefs at Lee Stocking Island (Bahamas) illustrate that boring cyanobacteria species make a major contribution to microboring bioerosion rates. Borings attributed to cyanobacteria also occur in fossil environments. Bioerosional studies on Permian and Triassic reefs show similar intensities to those observed on modern equivalents. The importance of borings assigned to cyanobacterial activity is even more apparent in paleobathymetry. Comparison of the bathymétrie ranges known from modern and fossil microborings demonstrates a preference of boring cyanobacteria for shallow marine environments. Furthermore, some traces are linked to distinct portions of the shallow euphotic zone. They significantly contribute to characterize typical microboring assemblages, which are used for paleodepth reconstructions. In contrast to these stenobathic species, one cyanobacterial species turned out to be eurybathic. It has been recorded as deep as the dysphotic zone but may even extend to the aphotic zone.     

Epi- and endobiontic organisms on Late Jurassic crinoid columns from the Negev Desert, Israel: Implications for co-evolution

Columns of the articulate crinoids Millericrinus and Apiocrinites from the Upper Jurassic (Upper Callovian) Zohar and Matmor formations of the Negev Desert of Israel display abundant encrusting organisms of about ten species, as well as diverse trace fossils produced by endobionts. Pluricolumnals were colonized by epi- and endobiontic organisms both during life and post-mortem. Skeletonized encrusting organisms include abundant ostreid bivalves (which evidently colonized both live and dead crinoid columnals), two types of serpulid worms, encrusting foraminifera, three species of bryozoans, and small encrusting sclerosponges. Several types of borings are present: Trypanites (possibly produced by sipunculids), Gastrochaenolites (crypts of boring lithophagid bivalves), elliptical barnacle? borings, and channel-like annelid? borings. In addition, approximately 16% of the pluricolumnals display circular parabolic embedment pits assignable to the ichnogenus Tremichnus. They are associated with substantial deformation of the containing columnals and were probably the work of host-specific ectoparasitic organisms. Discovery of Tremichnus on Jurassic crinoids extends the range of this trace by almost 100 million years, providing evidence for one of the longest-ranging host-parasite interactions documented thus far (over 200 million years). The relationship of epibionts to the Jurassic crinoids thus ranged from simple utilization of dead hard substrate to probable opportunistic commensalism in forms that colonized the live upright stems, as in some oysters, through host-specific parasitism in the case of Tremichnus.     

Late Pleistocene leopards as a bone accumulator: taphonomic results from S’Espasa cave and other Iberian key sites

Abstract

The Pleistocene faunal accumulations documented in caves have commonly been attributed to the activity of humans or carnivores. According to the palaeontological and archaeological literature, cave hyena (Crocuta spelaea) was the main known bone accumulator in karstic environments. However, in recent times, the role of leopards as bone accumulators has been revealed, and recent research has identified this behaviour in the Iberian Pleistocene. Moreover, there are other caves where leopard could have been claimed as an accumulator such as S’Espasa. In this work we present its taphonomic study. This cave was compared with the actualistic studies of leopards. Besides, the site of S’Espasa was compared with the other leopard dens in the Iberian Peninsula. These sites present faunal assemblages composed mainly by leopard (Panthera pardus) and Iberian wild goat (Capra pyrenaica), the bones of this ungulate present a similar pattern of bone modification by carnivores, skeletal survival rate, and bone breakage. These features indicate that goats could have been accumulated by leopards. With the data from this work and the previous ones, we try to establish a pattern that will help in the future to identify other accumulations created by this big cat.     

Thermal strategies and energetics in two sympatric colubrid snakes with contrasted exposure

The thermoregulatory strategy of reptiles should be optimal if ecological costs (predation risk and time devoted to thermoregulation) are minimized while physiological benefits (performance efficiency and energy gain) are maximized. However, depending on the exact shape of the cost and benefit curves, different thermoregulatory optima may exist, even between sympatric species. We studied thermoregulation in two coexisting colubrid snakes, the European whipsnake (Hierophis viridiflavus, Lacépède 1789) and the Aesculapian snake (Zamenis longissimus, Laurenti 1768) that diverge markedly in their exposure, but otherwise share major ecological and morphological traits. The exposed species (H. viridiflavus) selected higher body temperatures (~30°C) than the secretive species (Z. longissimus, ~25°C) both in a laboratory thermal gradient and in the field. Moreover, this difference in body temperature was maintained under thermophilic physiological states such as digestion and molting. Physiological and locomotory performances were optimized at higher temperatures in H. viridiflavus compared to Z. longissimus, as predicted by the thermal coadaptation hypothesis. Metabolic and energetic measurements indicated that energy requirements are at least twice higher in H. viridiflavus than in Z. longissimus. The contrasted sets of coadapted traits between H. viridiflavus and Z. longissimus appear to be adaptive correlates of their exposure strategies.