Intrastratal trace fossil zonation,Cretaceous flysch of northern California

Dissection of fine‐grained turbidites within the Franciscan complex at Trinidad Harbor reveals intrastratal zonation of biogenic structures. The pre‐depositional association comprises only three ichnotaxa (preserved in convex hyporelief) and is less diverse than the tiered post‐depositional association (comprised by at least seven ichnotaxa preserved in full relief). The latter association is dominated by Melatercichnus (n. ichnogen.). Post‐depositional trace‐makers exploited abundant plant detritus deposited with the turbidite sand. Temporal alternation of trace fossil associations resulted from the infrequent, but catastrophic, disturbance of pre‐turbidite communities and local replacement by assemblies of opportunistic organisms. Although probably short‐lived at specific sites, the post‐turbidite infauna was tiered, enabling a variety of deposit feeders to harvest phytodetritus of varied size or density simultaneously at different depths within newly deposited turbidite sand layers.     

Trace fossils from the Podhale Flysch Basin, Poland - an example of ecologically-based lithocorrelation

Certain ichnogenera from the Podhale Flysch Basin do not occur randomly, but are grouped in distinct horizons, which are useful in mapping. The position of certain tuffite beds proves an approximate isochronism of those trace fossil horizons. Changes of the life conditions, among them especially oxygenation of the sea bottom, were responsible for that ichnologic differentiation. Profuse Occurrences of Taphrhelminthopsis are mainly connected with the presence of lighter, bluish shales, which indicates a well-oxygenated bottom. More distal and frequent sedimentation of turbidites could positively influence the preser-vational potential of the surface forms (very good state of preservation of Taphrhelminthopsis suggests that preservation of surface forms was frequent in the flysch basin), but the O₂ condition was the main controlling factor for the occurrences of ichnofauna. Most discriminating were trace makers of pre-depositional (mud-dwelling) Taphrhelminthopsis , and they were most probably irregular echinoids, while soft-bodied trace makers of pre- and post-depositional Planolites (post-depositional means sand-dwellers) were the most tolerant ones. An increased level of biological activity connected with a shift in the OMZ could have been the reason why Taphrhelminthopsis became so profuse in one period. Concerning preservational problems, some complications in determining pre- and post-depositional forms in the case of composite beds are presented.     

Commentary

Recently rediscovered type material referred to Muensteria Stern‐berg confirms that in its original (paleobotanical) definition this genus is too heterogenous to be useful in ichnotaxonomy. It contains plant remains, a coprolite string, and trace fossils. Some corrections concerning appearance of the analyzed specimens are introduced.     

A Nereites ichnofacies from the Ordovician‐Silurian Welsh Basin

The sediments of the Ordovician‐Silurian succession of west Wales are interpreted as turbiditic sands with associated pelagic and hemi‐pelagic mudstones. The strata contain a trace fossil assemblage consisting of fifteen ichnogenera, namely: Chondrites, Circulichnis, Cochlichnus, Cosmorhaphe, Desmograpton, Gordia, Helminthoida, Helminthopsis, Neonereites, Nereites, Paleodictyon, Palaeophycus, Planolites, Protopaleodictyon and Spirophycus. The ichnofaunal assemblage is typical of the Nereites ichnofacies. Twenty three ichno‐species are described, two of which (Helminthoida granulata, Palaeophycus serratus) are new. Turbiditic sands contain the most abundant and diverse ichnoassemblages, a reflection of favorable environmental conditions for habitation by benthic organisms. Both the turbiditic mudstones and anoxic hemipelagites contain just two ichno‐species, namely Chondrites ichnosp. and Planolites montanus both of which are common, albeit less so in the latter facies. The effects of preservation potential, medium and preservation mechanisms are also important controls on distribution.     

Isolation and characterization of polymorphic microsatellite DNA markers in the brown sole,Pleuronectes herzensteini

New microsatellite DNA markers from brown sole were developed and characterized. Fourteen primer sets were designed from 40 microsatellite regions. Eight of 14 loci exhibited variations comprising 8–31 alleles. Observed and expected heterozygosities ranged from 0.611 to 0.833 and from 0.647 to 0.968 among 36 individuals, respectively. Phz3, Phz8 and Phz12 significantly deviated from Hardy–Weinberg equilibrium, and there was a significant linkage disequilibrium between Phz2 and Phz12. Seven of eight loci conformed to the Mendelian manner of inheritance in a full‐sib family. Seven to four loci of three related species were cross‐amplified by primers for brown sole.     

Isolation and characterization of polymorphic microsatellites for the bastard sole (Microchirus azevia)

The bastard sole (Microchirus azevia) is a species of commercial interest in Spain. Nevertheless, little information is currently available about the genetic characteristics of wild populations. In this survey, we have developed eight new microsatellites using an enriched genome library protocol. Primers were screened on a total of 54 individuals from two wild populations (Mediterranean and Atlantic) from the south coast of Spain, revealing six to 18 alleles per locus with expected heterozygosities ranging from 0.51 to 0.94. These markers can potentially be useful tools for use in population genetic studies.     

The dispersion of sole, Solea solea and plaice, Plemonectes platessa within and away from a nursery ground in the Irish Sea

Populations of sole and plaice were sampled on and around a nursery on the North Wales coast during May, July arid October 1989 and 1990, and the distribution of age-groups described. Pre-recruit sole were tagged and reieased on the same area during September 1988 to provide information on their larger scale movements. Juvenile sole remained on the nursery ground close inshore until after their first winter, whereas plaice of the same age—group became more widely dispersed. Both species were still associated with the coastal zone as 2-groups, when they were vulnerable to capture by commercial trawls. The gradual movement of sole out of the nursery was almost complete by October of their third year. Sole tag returns were obtained mainly from the NE Irish Sea. and also from the E coast of Ireland. Only three of the 68 returns came from outside the Irish Sea, one from the SE Irish coast, one from Swansea Bay and another from the outer Bristol Channel. Published data indicated that plaice undergo more rapid and more extensive migrations within and away from the Irish Sea than sole of the same age-group. Juvenile plaice and sole populations from nursery grounds throughout the NE Irish Sea would become mixed, and could contribute to any of the spawning populations in that area.     

Names for trace fossils: a uniform approach

The taxonomic treatment of trace fossils needs a uniform approach, independent of the ethologic groups concerned. To this aim, trace fossils are rigorously defined with regard to biological taxa and physical sedimentary structures. Potential ichnotaxobases are evaluated, with morphology resulting as the most important criterion. For trace fossils related to bioerosion and herbivory, substrate plays a key role, as well as composition for coprolites. Size, producer, age, facies and preservation are rejected as ichnotaxobases. Separate names for undertracks and other poorly preserved material should gradually be replaced by ichnotaxa based on well-preserved specimens. Recent traces may be identified using established trace fossil taxa but new names can only be based on fossil material, even if the distinction between recent and fossil may frequently remain arbitrary. It is stressed that ichnotaxa must not be incorporated into biological taxa in systematics. Composite trace fossil structures (complex structures made by the combined activity of two or more species) have no ichnotaxonomic standing but compound traces (complex structures made by one individual tracemaker) may be named separately under certain provisions. The following emendations are proposed to the International Code of Zoological Nomenclature: The term 'work of an animal' should be deleted from the code, and ichnotaxa should be based solely on trace fossils as defined herein.     

Vagorichnus,a new ichnogenus for feeding burrow systems and its occurrence as discrete and compound ichnotaxa in Jurassic lacustrine turbidites of Central China

A new ichnogenus, Vagorichnus, is figured and described from Jurassic lacustrine turbidites of the Anyao Formation, Henan Province, Central China. Vagorichnus consists of complex burrow systems composed of discontinuous curved to meandering segments in which irregular networks are formed. The ichnospecies V. anyao covers burrow systems characterized by constricted and irregularly annulated segments, and ridge‐like knobs. Although traces are preserved as hypichnial ridges on the sole of turbidite sandstones, several lines of evidence indicate that these ichnofossils record the activity of a post‐event infauna. Vagorichnus occurs as discrete and compound ichnotaxa. In the latter case, it grades into Gordia and Tuberculichnus. Vagorichnus is interpreted as invertebrate feeding structures (Fodinichnia).     

Borings in trepostome bryozoans from the Ordovician of Estonia: two ichnogenera produced by a single maker, a case of host morphology control

The evolution of borings has shown that the morphology of borings is a function of both the borer and its substrate. This study investigated the effect of bryozoan internal skeletal morphology on the dimensions and distribution of borings. One hundred and forty-three trepostome colonies from the Middle and Upper Ordovician strata of northern Estonia were examined. Of these, 80% were matrix entombed, longitudinally sectioned ramose and hemispherical colonies, and 20% were matrix-free hemispherical colonies that allowed examination of the colony surfaces. Seventy-one percent of the ramose colonies were bored, whereas 88% of the hemispherical colonies were bored. On average, only 8% of colony surface areas were bored out. Borings were more randomly oriented in the hemispherical colonies. In contrast in the ramose colonies, the borings tended to more restricted to the thin-walled endozone and thus parallel to the branch axis. This is interpreted to be a function of the thick-walled exozones controlling to some extent where the borer could bore. Based on morphology, the borings in the hemispherical colonies are referred to Trypanites and those in the ramose colonies to Sanctum . Sanctum is revised to include two possible openings and to recognize that boring shapes were inherently constrained by the thick-walled exozones of the host bryozoan colonies. Both trace fossils were probably produced by a boring polychaete that used the tubes as domiciles.     

Isolation and characterization of 64 novel microsatellite markers from a fosmid library of female half-smooth tongue sole (Cynoglossus semilaevis)

Microsatellite markers were developed from a fosmid library of female half-smooth tongue sole, Cynoglossus semilaevis. Three hundred eighty-four clones were randomly selected to sequence (double strand reading), and 168 sequences in 143 clones were found to contain microsatellites. Of the 101 primer pairs designed, 64 gave polymorphic polymerase chain reaction products. Based on characterization with 36 individuals, the number of alleles ranged from two to nine. The values of observed and expected heterozygosities varied from 0.06 to 1.00 and from 0.05 to 0.94, respectively. These markers have the potential as tools for population structure evaluation, ecological analyses and linkage map construction.     

Fustiglyphus annulatus from the Ordovician of Ontario,Canada, with a systematic review of the ichnogenera Fustiglyphus Vialov 1971 and Rhabdoglyphus Vassoievich 1951

The ichnogenera Rhabdoglyphus Vassoievich 1951 and Fustiglyphus Vialov 1971, both a source of taxonomic confusion and inconsistent usage, are re‐examined. Many specimens of Fustiglyphus have been incorrectly described as Rhabdoglyphus, both prior and subsequent to the formulation of the former by Vialov in 1971. Updated synonymies for both ichnogenera and their ichno‐species indicate that two ichnospecies of Rhabdoglyphus can be distinguished, namely R. grossheimi Vassoievich 1951 and R. spinosus Ksiazkiewicz 1977, while F. annulatus Vialov 1971 is the only acknowledged ichnospecies of Fustiglyphus. The significant feature distinguishing the two ichnogenera is regarded as the presence of invaginated segments on Rhabdoglyphus as opposed to well‐defined rings or knots with no invagination on Fustiglyphus.

Although Spongolithus annulatus Fritsch 1908 is technically the senior synonym of Fustiglyphus annulatus, it is recommended that the latter name continue to be used in the interests of maintaining nomenclatural stability. Previously unreported specimens of Fustiglyphus annulatus from the Ordovician of Ontario are described and illustrated; one of these suggests that the swellings in Fustiglyphus possibly represent brood chambers of the producing‐organism(s). We also suggest that Fustiglyphus "retreated”; from onshore to deep‐water offshore environments at the end of the Paleozoic.     

Between a rock and a hard place: arthropod trackways and ichnotaxonomy

Several challenges exist in ichnotaxonomy: overcoming the perceived distinction between invertebrate and vertebrate ichnotaxonomy, standardizing terminology, rationalizing the plethora of ichnotaxa already in existence, and developing principles for diagnosing new ichnotaxa. Ichnotaxa should be based on morphology, and this morphology incorporates three key components; the behaviour expressed, the producer, and the substrate. Invertebrate and vertebrate ichnotaxa can both be accommodated within this framework, but they differ in the relative contributions of these components. The key to justifying the synonymy of existing ichnotaxa is the recognition of intergrading specimens. However, this is only the case for minor morphological variants (i.e. those representing minor differences in behaviour, such as gait parameters or stance; or minor differences in preservation, such as undertrack fallout or slight differences in substrate conditions). Intergrading specimens should not be used to justify synonymy between major morphological variants (i.e. those representing major behavioural differences, defined herein as ethological categories; or major differences in preservation, such as formation in soup, soft and firmgrounds), and such specimens should be denoted as hybrids (e.g. Cruziana × Rusophycus ). New ichnotaxa should ideally be based on observations of large samples of material, so that recurrence is demonstrable, and morphological continuums, or subset relationships, representing minor morphological variation, are identified. Ichnotaxa may only be erected on the basis of limited material if they truly represent a unique morphology. These principles have been developed with arthropod trackways in mind, but it is hoped that they will be of more general utility.     

扬子区晚震旦世动物化石新材料

扬子区晚震旦世地层中已有多种类型的动物及遗迹化石的报道。文中补充了不同地区和层位的骨骼及遗迹化石新材料,包括：江西上饶王家院陡山沱组顶部磷块岩中的磷酸盐化“十”字形骨针和云南晋宁王家湾灯影组上段隧石条带中的单轴双射硅质骨针,它们可能分属于钙质海绵和普通海绵类;贵州瓮安陡山沱组上段磷质白云岩中的可疑壳状化石;宜昌三斗坪金瓜墩陡山沱组下部（第二段）遗迹化石;瓮安陡山沱组上段及湖北南漳灯影组上段底部磷质硬底中的生物扰动构造。另外还报道了贵州清镇桃子冲剖面桃子冲组最底部的瓶状动物（Pro-tolagena limbata）化石,并认定桃子冲组与灯影组之间为假整合接触,其底界并无跨入震旦系的证据。     

Oxidative DNA damage in tissues of English sole (Parophrys vetulus) exposed to nitrofurantoin

Juvenile English sole were exposed intramuscularly to nitrofurantoin (NF) and the levels of 8-hydroxy-2′deoxyguanosine (8-OH-dG) in liver, kidney and blood were determined using reversed-phase HPLC with electrochemical detection. Identification and quantitation of the 8-OH-dG in the samples was accomplished by comparison with standard 8-OH-dG, which was characterized by UV spectroscopy and fast-atom bombardment mass spectrometry. The levels of hepatic 8-OH-dG increased (r² = 0.59, P = 0.015) with the dose of NF (0.10 – 10 mg NF/kg fish). In kidney and blood, however, the levels of 8-OH-dG were significantly higher than controls only at the highest dose tested. The level of binding in liver ranged from 0.37 to 0.76 fmol 8-OH-dG/μg DNA. The levels of hepatic 8-OH-dG reached a maximum (approx. 1 fmol 8-OH-dG/μg DNA) between 1 and 3 days after exposure, followed by a decrease to control levels (approx. 0.25 fmol 8-OH-dG/μg DNA) at 5 days post-exposure. These data demonstrate the first direct evidence for the formation of oxidized DNA bases resulting from the metabolism of a nitroaromatic compound by fish.     

Establishment and characterization of a testicular cell line from the half-smooth tongue sole, Cynoglossus semilaevis

Spermatogenesis within the adult testis is an excellent system for studying stem cell renewal and differentiation, which is under the control of testicular somatic cells. In order to understanding spermatogenesis in the half-smooth tongue sole (Cynoglossus semilaevis) as a marine fish model of aquaculture importance, we established a cell line called CSGC from a juvenile gonad of this organism. CSGC is composed of fibroblast-like cells, retains a diploid karyotype of 42 chromosomes, lacks the heterogametic W chromosome, lacks a female specific marker and expresses the dmrt, a marker for testicular somatic cells. Therefore, CSGC appears to consist of testicular somatic cell cells. We show that this cell line is effective for infection by the turbot reddish body iridovirus and flounder lymphocystis disease virus as evidenced by the appearance of cytopathic effect and virus propagation in the virus-infected cells, and most convincingly, the observation of viral particles by electon microscopy, demonstrateing that CSGC is suitable to study interactions between virus and host cells. As a first fish testicular somatic cell line of the ZZ-ZW genetic sex determination system, CSGC will be a useful tool to study sex-related events and interactions between somatic cells and germ cells during spermatogenesis.     

Isolation and characterization of polymorphic microsatellite loci from RAPD product in half-smooth tongue sole (Cynoglossus semilaevis) and a test of cross-species amplification

Eleven polymorphic microsatellite loci have been isolated and characterized from random amplified polymorphic DNA product in half-smooth tongue sole, Cynoglossus semilaevis. Twenty-one microsatellites were selected for designing microsatellite primers, of which 11 gave working primer pairs. They had between three and 12 alleles. Observed and expected heterozygosities varied from 0.53 to 0.93, and from 0.52 to 0.80, respectively. Five additional fish species assessed for cross-species amplification revealed between one and three positive amplifications and between zero and three polymorphic loci per species.     

Bichordites monastiriensis from the Pleistocene of southeast Jamaica

Bichordites monastiriensis Plaziat and Mahmoudi 1988, produced by burrowing spatangoid echinoids, is figured and described from shallow marine siliciclastic strata of the Pleistocene Old Pera Beds (Coastal Group) of southeast Jamaica. Its occurrence there represents only the second formal recording of this monospecific ichno‐taxon and extends its geographic range from the Mediterranean region to the Caribbean. The spatangoid species that produced this trace fossil is unknown, but, unlike examples from other areas, it is unlikely to be Echinocardium.     

Response of cereals to nitrogen in sole cropping and intercropping with different legumes

The response of sole and intercropped cereal to nitrogen fertilization was compared in three contrasting cropping systems, sorghum/pigeonpea, maize/groundnut, and sorghum/cowpea. The cereal in these systems responded to nitrogen similarly as in sole cropping, although different legumes affected the cereal differently. There was no current season benefit from the legume, whether it matured earlier or later than the cereal, and for high yields the cereal in intercropping needs fertilizer application. Response to nitrogen varied with the amount and distribution of seasonal rainfall. With increased nitrogen fertilizer applied to the intercropped cereal, the legume yields were suppressed. The optimum dose for the intercropped cereal was similar to that for sole cropping but it was 50% less in a dry year particularly, on a shallow Alfisol. The combined yields of both crops made intercropping more profitable than sole cropping. The relative advantage of intercropping was high in the sorghum/pigeonpea system (40 to 70%) because of the greater temporal difference between species, and moderate in the maize/groundnut (13 to 35%), and sorghum/cowpea (18 to 25%) systems. Although the relative advantage of intercropping (expressed as Land Equivalent Ratio (LER)) decreased with N, the economic value, of the advantage was little affected within the optimum N range because absolute yields increased with fertilization.