Radiating on oceanic islands: patterns and processes of speciation in the land snail genus Theba (Risso 1826)

Island radiations have played a major role in shaping our current understanding of allopatric, sympatric and parapatric speciation. However, the fact that species divergence correlates with island size emphasizes the importance of geographic isolation (allopatry) in speciation. Based on molecular and morphological data, we investigated the diversification of the land snail genus Theba on the two Canary Islands of Lanzarote and Fuerteventura. Due to the geological history of both islands, this study system provides ideal conditions to investigate the interplay of biogeography, dispersal ability and differentiation in generating species diversity. Our analyses demonstrated extensive cryptic diversification of Theba on these islands, probably driven mainly by non-adaptive allopatric differentiation and secondary gene flow. In a few cases, we observed a complete absence of gene flow among sympatrically distributed forms suggesting an advanced stage of speciation. On the Jandía peninsula genome scans suggested genotype-environment associations and potentially adaptive diversification of two closely related Theba species to different ecological environments. We found support for the idea that genetic differentiation was enhanced by divergent selection in different environments. The diversification of Theba on both islands is therefore best explained by a mixture of non-adaptive and adaptive speciation, promoted by ecological and geomorphological factors.     

Parapatric divergence of sympatric morphs in a salamander: incipient speciation on Long Island?

Speciation is often categorized based on geographic modes (allopatric, parapatric or sympatric). Although it is widely accepted that species can arise in allopatry and then later become sympatrically or parapatrically distributed, patterns in the opposite direction are also theoretically possible (e.g. sympatric lineages or ecotypes becoming parapatric), but such patterns have not been shown at a macrogeographic scale. Here, we analyse genetic, climatic, ecological and morphological data and show that two typically sympatric colour morphs of the salamander Plethodon cinereus (redback and leadback) appear to have become parapatrically distributed on Long Island, New York, with pure‐redback populations in the west and pure‐leadback populations in the east (and polymorphic populations in between and on the mainland). In addition, the pure‐leadback populations in eastern Long Island are genetically, ecologically and morphologically divergent from both mainland and other Long Island populations, suggesting the possibility of incipient speciation. This parapatric separation seems to be related to the different ecological preferences of the two morphs, preferences which are present on the mainland and across Long Island. These results potentially support the idea that spatial segregation of sympatric ecotypes may sometimes play an important part in parapatric speciation.     

Chance and necessity: land-snail faunas of Sao Miguel, Azores, compared with those of Madeira

The land-snail faunas of 23 sites from forest, disturbed andopen habitats were sampled on São Miguel, Azores archipelago.Collectively, the samples contained nearly all the known faunaof the island. Forest sites were the richest; while the numberof non-endemic species differed little between habitats, forestsheld more endemic species, many of which were widely distributed.Open habitats have no unique endemic species. These resultsare compared with similar data from Madeira. Although the twoislands are of the same size, and share the same Laurisilvaforest cover, their faunas differ in important aspects of diversity.While many non-endemic species are common to both islands, andoccur in similar numbers, endemic species are more numerouson Madeira, even though the numbers at individual forest sitesare, on average, fewer than on São Miguel. Many endemicsare confined to open, coastal habitats. These differences arediscussed in terms of the islands' histories, the range of habitatsavailable and the ease of dispersal from continental sources.Age, accidents of colonization and the range of natural habitatsavailable must have major effects on the faunas, but presentendemic faunal diversity is more a product of speciation andextinction than of immigration. (Received 13 May 2006; accepted 7 July 2006)     

Pattern,process and geographic modes of speciation

The tradition of classifying cases of speciation into discrete geographic categories (allopatric, parapatric and sympatric) fuelled decades of fruitful research and debate. Not surprisingly, as the science has become more sophisticated, this simplistic taxonomy has become increasingly obsolete. Geographic patterns are now reasonably well understood. Sister species are rarely sympatric, implying that sympatric speciation, it its most general sense, is rare. However, sympatric speciation, even in its most restricted population genetic sense, is possible. Several case studies have demonstrated that divergence has occurred in nature without geographic barriers to gene flow. Obviously, different sets of criteria for sympatric speciation will lead to different numbers of qualifying cases. But changing the rules of nomenclature to make ‘sympatric speciation’ more or less common does not constitute scientific progress. Advances in the study of speciation have come from studies of the processes that constrain or promote divergence, and how they are affected by geography.     

Phylogeography of the Madeiran endemic lizard Lacerta dugesii inferred from mtDNA sequences

Partial sequences from two mitochondrial DNA genes, cytochrome b and 12S rRNA, were used to assess the phylogenetic relationships of populations of Lacerta dugesii from the volcanic Atlantic islands of Madeira, the Desertas, Porto Santo, and the Selvagens. All four-island groups are genetically distinguishable and populations within each contain similar degrees of genetic diversity. Molecular clock estimates suggest that the islands were colonized much later after their emergence compared to other Atlantic islands, possibly due to their greater geographical isolation. Mismatch analysis of all populations is consistent with exponential growth, as expected after colonization of empty niches. The Selvagens contain genetic substructuring between the islets.     

Molecular evidence for adaptive radiation of Micromeria Benth. (Lamiaceae) on the Canary Islands as inferred from chloroplast and nuclear DNA sequences and ISSR fingerprint data

The Canary Islands have been a focus for phylogeographic studies on the colonization and diversification of endemic angiosperm taxa. Based on phylogeographic patterns, both inter island colonization and adaptive radiation seem to be the driving forces for speciation in most taxa. Here, we investigated the diversification of Micromeria on the Canary Islands and Madeira at the inter- and infraspecific level using inter simple sequence repeat PCR (ISSR), the trnK-Intron and the trnT-trnL-spacer of the cpDNA and a low copy nuclear gene. The genus Micromeria (Lamiaceae, Mentheae) includes 16 species and 13 subspecies in Macaronesia. Most taxa are restricted endemics, or grow in similar ecological conditions on two islands. An exception is M. varia, a widespread species inhabits the lowland scrub on each island of the archipelago and could represent an ancestral taxon from which radiation started on the different islands. Our analyses support a split between the "eastern" islands Fuerteventura, Lanzarote and Gran Canaria and the "western" islands Tenerife, La Palma and El Hierro. The colonization of Madeira started from the western Islands, probably from Tenerife as indicated by the sequence data. We identified two lineages of Micromeria on Gomera but all other islands appear to be colonized by a single lineage, supporting adaptive radiation as the major evolutionary force for the diversification of Micromeria. We also discuss the possible role of gene flow between lineages of different Micromeria species on one island after multiple colonizations.     

Effective population size may limit the power of laboratory experiments to demonstrate sympatric and parapatric speciation

Laboratory experiments designed to elucidate the mechanisms of sympatric and parapatric speciation may have been handicapped by too small population sizes, although this possibility has seldom been discussed. In this paper we review the published records of sympatric and parapatric speciation experiments to test the relative importance of selection intensity applied, duration of experiment and effective population size. Our results show that among these factors only effective population size has had a general effect on the generation of assortative mating. Reduced interbreeding is less likely to develop in small populations where the selection process often seems to have been opposed by inbreeding depression or loss of genetic variation. This study demonstrates that the experimental evidence frequently used as an argument against sympatric and parapatric speciation models is not as strong as previously believed.     

Biogeography of Indonesian snakes

The islands of eastern Indonesia occupy the major zone of contact and overlap between the reptile faunas of the Asian and Australo–Papuan regions. A survey of reptiles on twenty-eight islands in eastern Indonesia between 1988 and 1993 has documented several major range extensions and many new records of species on islands. The zoogeographic affinities of the snakes of Indonesian islands are re-examined in the light of both recent surveys and taxonomic research and coupled with that published previously. The major boundary in the snake fauna of Indonesia occurs between Sulawesi and the Lesser Sunda islands to the west and the northern and southern Maluku group of islands to the east; it corresponds to the major biogeographic boundary known as Weber's Line. The biogeographic affinities of the snakes of the Tanimbar islands are equivocal. The snake fauna of islands within the Lesser Sunda group indicate that separation between islands during the Pleistocene played a role in determining current assemblages and variation within species The islands of eastern Indonesia form biogeographic subregions that have relatively high levels of endemism and evidence of incipient speciation as a consequence of changes in sea-levels and climate during the Pleistocene.     

Variation in the genitalia of the land snail Heterostoma paupercula (Lowe, 1831) (Helicidae) in Madeira

The small helicid snail Heterostoma paupercula occurs in the Azores and Madeira. Previously regarded as a single species, it was split into two genera on the basis of variation in shell morphology and genital anatomy: Heterostoma having a toothed shell and being hemiphallic, while Steenbergia had a toothless shell and was euphallic. This division was first questioned when toothed shells {Heterostoma) in the Azores were found not to be hemiphallic. In this study the genitalia of 361 specimens from islands in the Madeira archipelago were examined. Four components of the genitalia were measured (penis/epiphallus, flagellum, bursa stalk and bursa) for 158 individuals. Hemiphally was found to be rare, occurring in only a proportion of the populations at two localities and it did not correspond with the expected shell morphology–the shells were untoothed (= Steenbergia) , which is the opposite of that previously described.
Variation in the genitalia was geographically based: Madeira and its nearest neighbour islands forming one group and the Porto Santo islands another. There is no evidence to suggest that the hemiphallic animals are more than an intraspecific form. It is suggested that the variation between the two island groups is reflective of allopatric differentiation. Without für ther evidence of divergence, H. paupercula should be regarded as the sole species throughout the range and the genus Steenbergia should be suppressed.     

Divergence and evolution in Darwin's finches

The medium and large ground finches of the Galapagos archipelago Geospiza fortis and G. magnirostris are distinguished by their different body size and bill dimensions on most of the islands where they both occur. On the island of Indefatigable this distinction is not complete and a group of birds with intermediate bill dimensions is present. The origin of this group could be explained by sympatric divergence of G. fortis or by hybridization, between this species and G. magnirostris . Although the conditions for sympatric divergence are severe it seems likely that strong disruptive selection for different optimal bill sizes may be operating on G. fortis , due to the presence of several ecological niches, separate categories of size and hardness of seeds the birds eat. It is suggested that islands in the Galapagos archipelago, and perhaps other oceanic islands, may provide conditions extremely conducive to sympatric divergence, or even sympatric speciation.     

The genetics and ecology of sympatric speciation: A case study

Mating occurs on the larval host plant in allRhagoletis species (Diptera: Tephritidae). We show how this attribute, when coupled with certain differences in other biological traits, strongly influences the mode of speciation. In species of thesuavis species group, host shifts have never occurred during speciation, and larvae feed in the husks of any walnut species(Juglans spp.), which are highly toxic. Taxa are allopatric or parapatric and exhibit deep phylogenetic nodes suggesting relatively ancient speciation events. Traits responsible for species and mate recognition, particularly in parapatric species, are morphologically distinct and strongly sexually dimorphic. All aspects of their biology, genetics and distribution are consistent with a slow rate of allopatric speciation followed by morphological divergence in secondary contact. In contrast, speciation in thepomonella species group has always involved a shift to a new, usually unrelated, non-toxic host, and all taxa within these groups are sympatric, monophagous and morphologically indistinguishable from one another. Phylogenetic nodes are very shallow, indicating recent sympatric speciation. Sympatric divergence is promoted by genetic variation which allows a portion of the original species to shift to a new habitat or host. Evidence suggests that changes in a few key loci responsible for host selection and fitness on a new host may initiate host shifts. By exploiting different habitats, competition for resources between diverging populations is reduced or avoided. We provide evidence that in phytophagous and parasitic insects sufficient intrinsic barriers to gene flow can evolve between sister populations as they adapt to different habitats or hosts to allow each population to establish independent evolutionary lineages in sympatry.     

Adaptive radiation in Lesser Antillean lizards: molecular phylogenetics and species recognition in the Lesser Antillean dwarf gecko complex, Sphaerodactylus fantasticus

The time associated with speciation varies dramatically among lower vertebrates. The nature and timing of divergence is investigated in the fantastic dwarf gecko Sphaerodactylus fantasticus complex, a nominal species that occurs on the central Lesser Antillean island of Guadeloupe and adjacent islands and islets. This is compared to the divergence in the sympatric anole clade from the Anolis bimaculatus group. A molecular phylogenetic analysis of numerous gecko populations from across these islands, based on three mitochondrial DNA genes, reveals several monophyletic groups occupying distinct geographical areas, these being Les Saintes, western Basse Terre plus Dominica, eastern Basse Terre, Grand Terre, and the northern and eastern islands (Montserrat, Marie Galante, Petite Terre, Desirade). Although part of the same nominal species, the molecular divergence within this species complex is extraordinarily high (27% patristic distance between the most divergent lineages) and is compatible with this group occupying the region long before the origin of the younger island arc. Tests show that several quantitative morphological traits are correlated with the phylogeny, but in general the lineages are not uniquely defined by these traits. The dwarf geckos show notably less nominal species-level adaptive radiation than that found in the sympatric southern clade of Anolis bimculatus , although both appear to have occupied the region for a broadly similar period of time. Nevertheless, the dwarf gecko populations on Les Saintes islets are the most morphologically distinct and are recognized as a full species ( Sphaerodactylus phyzacinus ), as are anoles on Les Saintes ( Anolis terraealtae ).     

Miocene intertidal zonation on a volcanically active shoreline: Porto Santo in the Madeira Archipelago,Portugal

Santos, A., Mayoral, E.J., da Silva, C.M., Cachão, M., Johnson, M.E. & Baarli, B.G. Miocene intertidal zonation on a volcanically active shoreline: Porto Santo in the Madeira Archipelago, Portugal. Lethaia, Vol. 44, pp. 26–32. Short‐term biological colonization of rockgrounds on the basaltic shorelines of oceanic islands has, as yet, been poorly explored. A Miocene sea cliff on Ilhéu de Cima off Porto Santo in the Madeira Archipelago of Portugal provides a case study showing intertidal zonation with two types of barnacles, serpulid worm tubes, two coral species, epifaunal bivalves and the trace fossils of endolithic bivalves. Large barnacles (Balanus sp.) and serpulids are limited to the upper 400 mm of a basalt cliff of 1.6 m in height. Small barnacles, possibly of the same species, extend to the base. The upper half includes the corals Isophyllastrea orbignyana and Tarbellastraea reussiana, to which many small, coral‐inhabiting, barnacles (Ceratoconcha costata) are fixed. Borings identified as Gastrochaenolites torpedo appear through the bottom two‐thirds of the cliff face. Rarely, Gastrochaenolites lapidicus is exposed in longitudinal section with borings up to 45 mm deep in solid basalt. Epifaunal bivalves, such as Spondylus sp., are limited to a middle zone. Associated with the sea cliff is an outer platform on which a multitude of T. reussiana colonies occur in growth position. The corals exhibit planar erosion over180 m². The shelf was faulted and cut by a basalt dike prior to the brief recolonization of I. orbignyana, found attached to low fault scarps. Habitation of the sea cliff was facilitated by rising sea level, but abruptly terminated by burial under volcanoclastic ejecta. □Basalt bioerosion, coastal dynamics, Ilhéu de Cima (Porto Santo), Miocene intertidal zonation, volcanogenic perturbations.     

Testing the role of climate in speciation: New methods and applications to squamate reptiles (lizards and snakes)

Climate may play important roles in speciation, such as causing the range fragmentation that underlies allopatric speciation (through niche conservatism) or driving divergence of parapatric populations along climatic gradients (through niche divergence). Here, we developed new methods to test the frequency of climate niche conservatism and divergence in speciation, and applied it to species pairs of squamate reptiles (lizards and snakes). We used a large‐scale phylogeny to identify 242 sister species pairs for analysis. From these, we selected all terrestrial allopatric pairs with sufficient occurrence records (n = 49 pairs) and inferred whether each originated via climatic niche conservatism or climatic niche divergence. Among the 242 pairs, allopatric pairs were most common (41.3%), rather than parapatric (19.4%), partially sympatric (17.7%), or fully sympatric species pairs (21.5%). Among the 49 selected allopatric pairs, most appeared to have originated via climatic niche divergence (61–76%, depending on the details of the methods). Surprisingly, we found greater climatic niche divergence between allopatric sister species than between parapatric pairs, even after correcting for geographic distance. We also found that niche divergence did not increase with time, further implicating niche divergence in driving lineage splitting. Overall, our results suggest that climatic niche divergence may often play an important role in allopatric speciation, and the methodology developed here can be used to address the generality of these findings in other organisms.     

Low reproductive isolation and highly variable levels of gene flow reveal limited progress towards speciation between European river and brook lampreys

Ecologically based divergent selection is a factor that could drive reproductive isolation even in the presence of gene flow. Population pairs arrayed along a continuum of divergence provide a good opportunity to address this issue. Here, we used a combination of mating trials, experimental crosses and population genetic analyses to investigate the evolution of reproductive isolation between two closely related species of lampreys with distinct life histories. We used microsatellite markers to genotype over 1000 individuals of the migratory parasitic river lamprey (Lampetra fluviatilis) and freshwater‐resident nonparasitic brook lamprey (Lampetra planeri) distributed in 10 sympatric and parapatric population pairs in France. Mating trials, parentage analyses and artificial fertilizations demonstrated a low level of reproductive isolation between species even though size‐assortative mating may contribute to isolation. Most parapatric population pairs were strongly differentiated due to the joint effects of geographic distance and barriers to migration. In contrast, we found variable levels of gene flow between sympatric populations ranging from panmixia to moderate differentiation, which indicates a gradient of divergence with some population pairs that may correspond to alternative morphs or ecotypes of a single species and others that remain partially isolated. Ecologically based divergent selection may explain these variable levels of divergence among sympatric population pairs, but incomplete genome swamping following secondary contact could have also played a role. Overall, this study illustrates how highly differentiated phenotypes can be maintained despite high levels of gene flow that limit the progress towards speciation.     

Evidence for spatial clines and mixed geographic modes of speciation for North American cherry‐infesting Rhagoletis (Diptera: Tephritidae) flies

An important criterion for understanding speciation is the geographic context of population divergence. Three major modes of allopatric, parapatric, and sympatric speciation define the extent of spatial overlap and gene flow between diverging populations. However, mixed modes of speciation are also possible, whereby populations experience periods of allopatry, parapatry, and/or sympatry at different times as they diverge. Here, we report clinal patterns of variation for 21 nuclear‐encoded microsatellites and a wing spot phenotype for cherry‐infesting Rhagoletis (Diptera: Tephritidae) across North America consistent with these flies having initially diverged in parapatry followed by a period of allopatric differentiation in the early Holocene. However, mitochondrial DNA (mtDNA) displays a different pattern; cherry flies at the ends of the clines in the eastern USA and Pacific Northwest share identical haplotypes, while centrally located populations in the southwestern USA and Mexico possess a different haplotype. We hypothesize that the mitochondrial difference could be due to lineage sorting but more likely reflects a selective sweep of a favorable mtDNA variant or the spread of an endosymbiont. The estimated divergence time for mtDNA suggests possible past allopatry, secondary contact, and subsequent isolation between USA and Mexican fly populations initiated before the Wisconsin glaciation. Thus, the current genetics of cherry flies may involve different mixed modes of divergence occurring in different portions of the fly''s range. We discuss the need for additional DNA sequencing and quantification of prezygotic and postzygotic reproductive isolation to verify the multiple mixed‐mode hypothesis for cherry flies and draw parallels from other systems to assess the generality that speciation may commonly involve complex biogeographies of varying combinations of allopatric, parapatric, and sympatric divergence.     

Comparative aspects of adaptive radiation and speciation in Lake Baikal and the great rift lakes of Africa

Lakes Baikal, Tanganyika and Malawi have similar origins, are physiographically similar, and of similar size. The hydrological regime of Baikal is, however, very different from that which prevails in its African sisters. Apart from being much cooler, it differs fundamentally in being oxygenated to all depths while the two great African rift lakes possess only a relatively thin oxygenated surface layer and have vast oxygenless, and therefore azoic, abyssal regions. Nevertheless, like Baikal, they have rich endemic faunas.That these faunas originated largely by intralacustrine speciation and not by multiple invasion is now well established. They provide some of the world's most spectacular examples of species flocks, and some groups display what has been aptly described as explosive speciation. Certain features, and especially the adaptive radiation, of some of the groups involved, are noted. Comparisons between lakes are illuminating. Some species flocks, such as those of amphipods, sponges and turbellarians of Baikal and the atyid prawns and potamid crabs of Tanganyika, have no counterparts in the other lakes. Other groups, such as the prosobranch gastropods, ostracods and harpacticoid copepods of Baikal and Tanganyika, and the fishes of all three, involve representatives of the same major group, though often of different families or even higher taxonomic categories.That allopatric speciation has been involved is universally acknowledged but the problems posed by species multiplication in deep water in L. Baikal have led to suggestions that sympatric speciation could have played a part. Notwithstanding the difficulties, it is suggested that the process can be explained without invoking the assistance of the sympatric model.The faunas of these lakes provide immense fields for investigation and enormous intellectual challenges. While each is an entity in itself, comparative studies may be particularly enlightening.The substance of this paper was presented as a lecture at the First International Baikal Vereshchagin Conference held in Listvyanka, Irkutsk Region, U.S.S.R. in October 1989.     

Increased floral divergence in sympatric monkeyflowers

Sympatric sister species are predicted to have greater divergence in reproductive traits than allopatric sister species, especially if mating system shifts, such as the evolution of self-fertilization, are more likely to originate within the geographic range of the outcrossing ancestor. We present evidence that supports this expectation-sympatric sister species in the monkeyflower genus, Mimulus, exhibit greater divergence in flower size than allopatric sister species. Additionally, we find that sympatric sister species are more likely to have one species with anthers that overtop their stigmas than allopatric sister species, suggesting that the evolution of automatic self-pollination may contribute to this pattern. Potential mechanisms underlying this pattern include reinforcement and a stepping stone model of parapatric speciation.     

A two-locus model of speciation.

Speciation is considered as the evolution of partial or complete cross-incompatibility between the carriers of genes (at a locus called "object locus") that distinguish the prospective species populations. The mating relations at the object locus are modified by the alleles at a second mating modifier locus. Based on a widely applicable concept of fitness and mating preference, it is shown that heterozygote disadvantage in fitness at the object locus is necessary for speciation, which corroborates Wallace's hypothesis. It is pointed out that the difference between sympatric and parapatric speciation essentially lies in the mechanisms stabilizing the polymorphism required at the object locus as a prerequisite for speciation. In the presence of recombination between the object and mating modifier locus speciation may be prevented by forces maintaining gametic phase imbalance between these loci such as can result from unidirectional gene flow between parapatric populations.     

Diversification in North American arid lands: Niche conservatism, divergence and expansion of habitat explain speciation in the genus Ephedra

A lineage of 12 arid land shrubby species in the gymnosperm genus Ephedra (Gnetales) from North America is used to evaluate the influence of climate on speciation. With a long evolutionary history, and a well documented fossil record this lineage is an ideal model for understanding the process of speciation under a niche conservatism scenario. Using seven DNA molecular markers, Bayesian inference is carried out to uncover sister species and to estimate time of divergence of the lineages. Ecological niche models are generated for four parapatric and sympatric sister species and two analyses of niche evolution are performed, one based on ecological niche models and another using raw data and multivariate analysis. As previous analyses suggest, the diversification of North America Ephedra species may be the result of a recent secondary radiation. Both parapatric and sympatric species diverged mostly in a scenario of climatic niche conservatism. However, we also found strong evidence for niche divergence for one of the sister species pairs (E. californica-E. trifurca). Moreover, the multivariate analysis found environmental differences for some variables between sister species. The estimated divergence time of three pairs of sister species distributed in southwestern North America (E. cutleri-E. aspera, E. californica-E. trifurca and E. torreyana-E. viridis) is inferred to have occurred in the Late Miocene to Pliocene and for the sister species pair E. antisyphilitica-E. coryi distributed in the southern United States and northeastern Mexico, it was inferred from the Pliocene to Pleistocene. The orogenetic and climatic changes documented for these regions related to expansion of arid lands, may have contributed to the diversification in North American Ephedra, rather than adaptations to new climatic conditions.