New genera of Copepoda (Poecilostomatoida) from the scleractinian coral Psammocora in New Caledonia

Three new monotypic genera of copepods (Poecilostomatoida) are associated with the hermatypic shallow-water coral Psammocora (Stephanaria) logianensis near Noumea, New Caledonia: in the Anchimolgidae, Lipochaetes extrusus (antenna 4-segmented, endopods absent in legs 3 and 4) and Dumbeana undulatipes (antenna 3-segmcntcd, endopod of leg 3 with formula 0 1; 0–2; 1,11,2; leg 4 endopod with 0 1:1); and in the Rhynchomolgidae; Emunoa proknta (leg 4 endopod with 0 1;II, antenna 4-segmented, mandible witli outer pointed process and inner row of spines). Copepoda (primarily Poecilostomatoida and Siphonostomatoida, but also relatively few Cyclopoida and Harpacticoida) are very frequent associates or parasites of Scleractinia. At present 245 species from 48 scleractinian coral genera are known. Species of these copepod associates, their host genera, and localities, described since (and those not included in) previous publications of the author are listed.     

Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from Holocene sea-level change

This study investigated the influence of reproductive strategy (benthic or pelagic eggs) and habitat preferences (lagoon or outer slope) on both diversity and genetic differentiation using a set of populations of seven coral reef fish species over different geographic scales within French Polynesia. We hypothesized that a Holocene sea-level decrease contributed to severe reduction of population size for species inhabiting lagoons and a subsequent decrease of genetic diversity. Conversely, we proposed that species inhabiting stable environments, such as the outer slope, should demonstrate higher genetic diversity but also more structured populations because they have potentially reached a migration-genetic drift equilibrium. Sequences of the 5' end of the mitochondrial DNA (mtDNA) control region were compared among populations sampled in five isolated islands within two archipelagos of French Polynesia. For all the species, no significant divergences among populations were found. Significant differences in mtDNA diversity between lagoonal and outer-slope species were demonstrated both for haplotype diversity and sequence divergence but none were found between species with different egg types. Pairwise mismatch distributions suggested rapid population growth for all the seven species involved in this study, but they revealed different distributions, depending on the habitat preference of the species. Although several scenarios can explain the observed patterns, the hypothesis of population size reduction events relative to Holocene sea-level regression and its consequence on French Polynesia coral reefs is the most parsimonious. Outer-slope species have undergone a probable weak and/or old bottleneck (outer reefs persisted during low sea level, leading to reef area reductions), whereas lagoonal species suffered a strong and/or recent bottleneck since Holocene sea-level regression resulted in the drying out of all the atolls that are maximum 70 meters deep. Since present sea level was reached between 5000 and 6000 years ago, different demographic events (bottlenecks or founder events) have lead to the actual populations of lagoons in French Polynesia.     

A simple model of growth form-dependent recovery from disease in coral reef sponges, and implications for monitoring

For clonal organisms that can suffer high levels of partial mortality and still recover, the conditions that influence infection and development of disease (e.g., abiotic stressors, population density) may be very different from the conditions that influence recovery. Recovery from infectious disease may increase if an individual can mount a defense before infection spreads throughout its body. If pathogens spread within an organism from an initial infection point, growth form—in conjunction with size—can influence the amount of time before all the tissue is diseased, and recovery precluded. A simple model of pathogen progression within individual sponges predicts that species with massive growth forms will be most susceptible to being overwhelmed by pathogen infection, and branching species will be most likely to recover. These predictions may help to explain the seemingly contradictory observations that branching species had the greatest prevalence of disease, and massive species the greatest rate of loss, in a monitored coral reef community. Disease may be observed disproportionately frequently in the organisms that are most likely to recover, resulting in underestimation, by standard monitoring procedures, of the effect of disease on losses from the community.     

The importance of urban reserves for conserving beetle communities: a case study from New Zealand

Urban reserves provide a major opportunity for conservation of indigenous biodiversity in the heavily urbanised landscape of Waitakere City (Auckland), New Zealand. However, there is little documented information on what indigenous fauna survives in these reserves. Beetle (Coleoptera) communities associated with two small, isolated urban reserves and two sites in a larger forest area within the Waitakere Ranges were sampled using pitfall traps and analysed. A total of 887 beetles, from 23 families and 89 recognisable taxonomic units were caught. The urban reserves had a marked reduction in species richness and abundance of beetles compared with the sites within the larger forest areas. Various environmental factors influencing the distribution of beetles across the sites were investigated. The most important factors were size of fragment, local forest cover and soil moisture. Common species (>5 specimens in the total dataset) found in the Waitakere Ranges and small urban reserves, were either endemic or indigenous to New Zealand. Therefore, even though these reserves may be isolated from a larger, more continuous forest tract, they have considerable potential as reservoirs of beetle diversity in highly modified landscapes and the contribution of urban reserves to the local sustainability of beetle assemblages emphasises the importance of maintaining green areas in and around cities.     

Effects of within-lake gradients on the distribution of fossil chironomids from maar lakes in western Alaska: implications for environmental reconstructions

We examined fossil chironomids (Diptera: Chironomidae) in the surface sediments of four maar lakes in western Alaska to determine chironomid distribution patterns with respect to within-lake gradients of water depth, LOI (loss-on-ignition), and bottom-water temperature. Linear and non-linear regressions were undertaken to test whether the within-lake distributions of fossil chironomids were uniform. Additionally, water depths where abrupt changes or breakpoints in the assemblages occur were identified using piecewise regression. Direct gradient analysis was then used to examine variation in the assemblages explained by the environmental data. For the shallowest lake, chironomid abundances of individual taxa and inferred temperatures varied little within the lake. For the three deep lakes, seven of the sixteen commonest fossil taxa varied significantly with water depth, although some lake-specific patterns were evident. Water depth was generally identified as the principal environmental variable in explaining variation in the assemblages, although sediment organic matter content and bottom-water temperature were also important. Abrupt changes in assemblages occurred at different water depths in each lake, and at only one lake did the breakpoint occur within the range of water depths defining the thermocline. Chironomid-inferred temperature trends from the lakes also showed depth-related patterns: the warmest inferred temperatures were generally from both the shallowest and deepest water depths, whereas intermediate depths yielded temperature inferences about 0.5 to 1.0°C cooler than the average within-lake value. Nevertheless, we conclude that these patterns had only a slight impact on temperature reconstructions relative to the prediction error of the model. A greater understanding of taphonomic processes is needed to determine their influence on environmental reconstructions based on chironomids. Handling editor: J. Saros     

Phylogeography of colour polymorphism in the coral reef fish Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef

Body colour has played a significant role in the evolution of coral reef fishes, but the phylogenetic level at which colour variation is expressed and the evolutionary processes driving the development and persistence of different colour patterns are often poorly understood. The aim of this study was to examine the genetic relationships between multiple colour morphs of Pseudochromis fuscus (family Pseudochromidae), both within and among geographic locations. Pseudochromis fuscus is currently described as a single species, but exhibits at least six discrete colour morphs throughout its range. In this study, P. fuscus from Papua New Guinea (PNG) and the Great Barrier Reef (GBR), Australia, formed three genetically distinct clades based on mitochondrial DNA (control region) sequence data: (1) yellow and brown morphs from the GBR and southern PNG, as well as an orange morph from southern PNG; (2) a pink morph from southern PNG; and (3) all three morphs (pink, orange and grey) found in Kimbe Bay, northern PNG. The three groups showed deep levels of divergence (d=14.6–25.4%), suggesting that P. fuscus is a complex of polychromatic species, rather than a single widespread species with many different colour morphs. Population genetic analyses indicate that the three clades have experienced unique evolutionary histories, possibly from differential effects of sea level fluctuations, barriers to gene flow and historical biogeography.     

Origins of species richness in the Indo‐Malay‐Philippine biodiversity hotspot: evidence for the centre of overlap hypothesis

The Indo‐Malay‐Philippine (IMP) biodiversity hotspot, bounded by the Philippines, the Malay Peninsula and New Guinea, is the epicentre of marine biodiversity. Hypotheses to explain the source of the incredible number of species found there include the centre of overlap hypothesis, which proposes that in this region the distinct faunas of the Pacific and Indian Oceans overlap. Here we review the biogeographical evidence in support of this hypothesis. We examined tropical reef fish distributions, paying particular attention to sister species pairs that overlap in the IMP hotspot. We also review phylogeographical studies of wide‐ranging species for evidence of lineage divergence and overlap in the IMP region. Our synthesis shows that a pattern of isolation between the Pacific and the Indian Ocean faunas is evident across a wide range of taxa. The occurrence of sister species, with one member in each ocean, indicates that the mechanism(s) of isolation has been in effect since at least the Miocene, while phylogeographical studies indicate more recent divergences in the Pleistocene. Divergence in isolation followed by population expansion has led to an overlap of closely related taxa or genetic lineages in the hotspot, contributing to diversity and species richness in the region. These findings are consistent with the centre of overlap hypothesis and highlight the importance of this process in generating biodiversity within the IMP.     

Characterization of population structure from the mitochondrial DNA vis‐à‐vis language and geography in Papua New Guinea

Situated along a corridor linking the Asian continent with the outer islands of the Pacific, Papua New Guinea has long played a key role in understanding the initial peopling of Oceania. The vast diversity in languages and unique geographical environments in the region have been central to the debates on human migration and the degree of interaction between the Pleistocene settlers and newer migrants. To better understand the role of Papua New Guinea in shaping the region's prehistory, we sequenced the mitochondrial DNA (mtDNA) control region of three populations, a total of 94 individuals, located in the East Sepik Province of Papua New Guinea. We analyzed these samples with a large data set of Oceania populations to examine the role of geography and language in shaping population structure within New Guinea and between the region and Island Melanesia. Our results from median‐joining networks, star‐cluster age estimates, and population genetic analyses show that while highland New Guinea populations seem to be the oldest settlers, there has been significant gene flow within New Guinea with little influence from geography or language. The highest genetic division is between Papuan speakers of New Guinea versus East Papuan speakers located outside of mainland New Guinea. Our study supports the weak language barriers to genetic structuring among populations in close contact and highlights the complexity of understanding the genetic histories of Papua New Guinea in association with language and geography. Am J Phys Anthropol 142:613–624, 2010. © 2010 Wiley‐Liss, Inc.     

Varying growth rates in bamboo corals: sclerochronology and radiocarbon dating of a mid-Holocene deep-water gorgonian skeleton (<Emphasis Type="Italic">Keratoisis</Emphasis> sp<Emphasis Type="Italic">.</Emphasis>: Octocorallia) from Chatham Rise (New Zealand)

A branched mid-Holocene bamboo coral skeleton of the isidid gorgonian genus Keratoisis (Octocorallia) recovered at southwestern Chatham Rise (New Zealand) from an average water depth of 680 m is described with respect to sclerochronology and age determination. Growth rates of the Mg-calcitic internodal increments were investigated by the counting of colour bands and radiocarbon dating. Growth banding is produced by varying orientations of crystal fan bundles towards the image plane. The skeleton shows three growth interruptions, which are documented in all branches. AMS ¹⁴C ages decrease from base to top of the trunk and from the central axes to the margins of the branches, documenting a simultaneous vertical and lateral growth. The data provide a maximum age of 3,975 ± 35 years BP, and a record spanning 240 ± 35 years. While calculated longitudinal growth rates amount to an average of 5 mm year⁻¹ during a 55-year record, average lateral linear extension rates of 0.4 mm year⁻¹ are an order of magnitude lower, still allowing for a seasonal to annual resolution of colour bands on a macroscopic scale and for a daily to monthly resolution on microscales of individual crystal generations to fascicle bundles. Hence, the isidid skeleton provides a high-resolution archive of paleoceanographic dynamics in deeper water masses. Concentric incremental accretion around the central axis in the early growth stages changed into a unilaterally asymmetric growth during late-stage evolution, probably triggered by the establishment of a stable system of unidirectional currents and nutrient flux. While colour band counts, related to the AMS ¹⁴C ages, support a seasonal to annual accretion of macroscopic growth bands in the inner concentric and complete outer parts of the skeleton, incremental growth rates at the condensed side are highly variable, as documented by hiatuses and unconformities. Thus the specimen proves that growth rates of bamboo corals may vary within individual skeletons and strongly deviate from the annual mode, hence showing implications on paleoceanographic proxy analyses.     

Application of the Fourier Method to Differentiate Biological Rhythms from Stochastic Processes in the Growth of <Emphasis Type="Italic">Selenastrum capricornutum</Emphasis> Printz: Implications for Model Development

The biological rhythms of microalgal growth within a hydraulically integrated serial turbidostat algal reactor (HISTAR) were examined after comparison of a simple mechanistic productivity model with actual data yielded a standard error of prediction (SEP) of 62%. The data used for this study were taken on cultures of Selenastrum capricornutum grown under continuous 400-watt metal halide lighting. Fourier series analysis (up to five harmonics) was used to model the biorhythms and differentiate them from stochastic processes. Regression analyses revealed that the best Fourier series fit for the data was a three harmonic summation. Regression analyses on additional harmonic summations did not increase r ² by more than 1%. The three harmonics were summed and incorporated into the growth term of the simple model, and the resultant full model was calibrated. The mechanistic HISTAR productivity model was greatly enhanced by the addition of the biological rhythm component, resulting in a SEP of <24.8 %. The period of the first harmonic was 13.4 days, which is very close to a circasemilunar rhythm (14.8 days). In summary, the predictive power of productivity models for continuous microalgal cultures can be dramatically improved with the inclusion of a biorhythm analysis.