Abundance and distribution of Ulva microscopic propagules associated with a green tide in the southern coast of the Yellow Sea

The presence of Ulva microscopic propagules may play an important role in the rapid development of high-biomass blooms of green algae in the Yellow Sea. Six cruises were conducted, to determine the abundance and distribution of Ulva microscopic propagules associated with a green tide that developed in the southern coastal waters of the Yellow Sea from April to August, 2012. Results indicated that Ulva microscopic propagules were widespread in these waters, with the highest density being up to 4800 ind. L⁻¹, prior to the appearance of the green tide in April. High densities were also widely distributed along the coast during May and June, after the appearance of the floating green tide. The quantity of Ulva microscopic propagules significantly decreased when the floating green tide declined in July, reaching densities of up to 162 ind. L⁻¹, following the disappearance of the floating green tide in August. Quantitative studies on the distribution patterns of Ulva microscopic propagules along the southern coast of the Yellow Sea indicated a significant correlation between density and salinity, turbidity and nutrient concentrations. Temporal and geographical distribution patterns of Ulva microscopic propagules were also significantly affected by the presence of a large biomass of attached, or floating, Ulva species algae.     

Tracing the origin of green macroalgal blooms based on the large scale spatio-temporal distribution of Ulva microscopic propagules and settled mature Ulva vegetative thalli in coastal regions of the Yellow Sea,China

From 2008 to 2016, massive floating green macroalgal blooms occurred annually during the summer months in the Yellow Sea. The original source of these blooms was traced based on the spatio-temporal distribution and species composition of Ulva microscopic propagules and settled Ulva vegetative thalli monthly from December 2012 to May 2013 in the Yellow Sea. High quantities of Ulva microscopic propagules in both the water column and sediments were found in the Pyropia aquaculture area along the Jiangsu coast before a green macroalgal bloom appeared in the Yellow Sea. The abundance of Ulva microscopic propagules was significantly lower in outer areas compared to in Pyropia aquaculture areas. A molecular phylogenetic analysis suggested that Ulva prolifera microscopic propagules were the dominant microscopic propagules present during the study period. The extremely low biomass of settled Ulva vegetative thalli along the coast indicated that somatic cells of settled Ulva vegetative thalli did not provide a propagule bank for the green macroalgal blooms in the Yellow Sea. The results of this study provide further supporting evidence that the floating green macroalgal blooms originate from green macroalgae attached to Pyropia aquaculture rafts along the Jiangsu coastline of the southern Yellow Sea.     

Trophic-functional patterns of biofilm-dwelling ciliates at different water depths in coastal waters of the Yellow Sea,northern China

Vertical variations in trophic-functional patterns of biofilm-dwelling ciliates were studied in coastal waters of the Yellow Sea, northern China. A total of 50 species were identified and assigned to four trophic-functional groups (TFgrs): algivores (A), bacterivorous (B), non-selective (N) and raptors (R). The trophic-functional structures of the ciliate communities showed significant variability among different water depths: (1) with increasing water depth, relative species numbers and relative abundances of groups A and R decreased sharply whereas those of groups B and N increased gradually; (2) in terms of the frequency of occurrences, group A dominated at depths of 1–3.5 m whereas group B dominated at 5 m, while in terms of the probability density function of the trophic-functional spectrum, group A was the highest contributor at 1 m and group B was highest at the other three depths; (3) distance-based redundancy analyses revealed significant differences in trophic-functional patterns among the four depths, except between 2 and 3.5 m (P > 0.05); and (4) the trophic-functional trait diversity increased from 1 to 3.5 m and decreased sharply at 5 m. Our results suggest that the biofilm-dwelling ciliates maintain a stable trophic-functional pattern and high biodiversity at depths of 1–3.5 m.     

Ulva diversity in the Yellow Sea during the large‐scale green algal blooms in 2008–2009

In the Yellow Sea of China, large‐scale green tides have broken out for three consecutive years from 2007 to 2009. As part of the efforts to localize the algal source, two cruises were conducted in the early stage and the outbreak stage of the bloom in 2009. We analyzed the morphological and genetic diversity of drifting Ulva specimens and culture‐derived isolates from seawater sampled in different localities. For phylogenetic analyses, the nuclear encoded ribosomal DNA internal transcribed spacer region (ITS nrDNA) and the plastid encoded large subunit of ribulose‐1, 5‐bisphosphate carboxylase/oxgenase gene (rbcL) were used. Our molecular and morphological data indicate that the dominant free‐floating Ulva species in 2008 and 2009 possibly belonged to a single strain of the U. linza‐procera‐prolifera (LPP) clade. The ITS sequences from bloom‐forming algal samples with dense branches were identical to those from U. linza‐like specimens without branches derived from the Yellow Sea. Microscopic individuals of the dominant Ulva strain were detected in eight stations, revealing that spore dispersal in the water helped to enlarge biomass in the water during the outbreak stage of green tide in the Yellow Sea.     

Seasonal variation of dominant free-floating and attached Ulva species in Rudong coastal area,China

In this paper, species compositions and seasonal variations of attached Ulva species on Porphyra aquaculture rafts and free floating Ulva species at Rudong coastal area, Jiangsu Province of China were investigated during 2010–2011. Based on the sequences analysis of nuclear-encoded ITS (including 5.8S rDNA regions) and 5S rDNA spacer regions, dominant species of both attached and free-floating Ulva samples were identified as Ulva compressa, Ulva linza, Ulva prolifera and Ulva flexuosa. Phylogenetic tree based on sequences of ITS and 5S rDNA spacer regions for attached and free-floating Ulva species was constructed, respectively. Species compositions of the Ulva population attached on aquaculture rafts varied with seasons, and U. prolifera was only found on aquaculture rafts in March 2011 during the 2010–2011 Porphyra yezoensis cultivation season, which had the same sequences of ITS and 5S rDNA spacer regions as that of the dominant species bloomed in the Yellow Sea of China in 2008. Dominant species of the free-floating Ulva population at the early stage of the green tide were U. compressa, U. flexuosa, and U. linza. Free-floating U. prolifera appeared in the middle of May, 2011. ITS sequence similarity rates of U. compressa and U. flexuosa between the attached and free-floating species were 100%. And ITS and 5S rDNA spacer sequences of the attached and the free-floating U. prolifera population also showed no differences. Further study showed that there were two types of free-floating U. prolifera population (Type 5S-A and Type 5S-B) based on 5S rDNA spacer sequences. The present study would provide some useful information for clarifying the outbreak mechanism of green tides occurred in the Yellow Sea, China.     

Molecular analysis of green-tide-forming macroalgae in the Yellow Sea

In the summer of 2008, free-floating green algae bloomed in the Yellow Sea. Samples were collected in a wide area (119°32′-122°00′E, 32°25′-36°49′N). We calculated the sequence divergences of nuclear ITS, chloroplast rbcL, and psbA data of free-floating samples collected from the Yellow Sea and Ulvaceae from Europe and Japan. In the ITS sequence, 19 out of the 21 Yellow Sea samples of 2008 were identical to those of a sample taken at Qingdao in 2007. A low divergence (0.2%) was found in remaining two samples. Similar evidence was shown by pairwise distances of rbcL and psbA gene sequence data, implying the uniformity of the Yellow Sea blooms in 2007 and 2008. The ITS sequence of the Yellow Sea samples differed 8.1-10.8% from free-floating Enteromorpha or Ulva reported worldwide. ITS-based molecular phylogenetic results and rbcL sequence data grouped the free-floating alga in the Yellow Sea into one clade with Enteromorpha procera, Enteromorpha linza and Enteromorpha prolifera. Furthermore, both morphological characteristics and ribotype network of the ITS sequences imply that the blooming algae in 2007 and 2008 were E. prolifera. The haplotypes of the Yellow Sea free-floating E. prolifera are closely related to those from the Japanese coast but less to European and American algae.     

Identification of roots of woody species using polymerase chain reaction (PCR) and restriction fragment length polymorphism (RFLP) analysis

Within the last two decades, substantial progress has been made in understanding seed-bank dynamics and the contribution of the soil seed bank to a postdisturbance plant community. There has been relatively little progress, however, in understanding perennial bud-bank dynamics and the contribution of the soil bud bank to secondary succession. This lack of information is due primarily to the inability to reliably identify roots, rhizomes and lignotubers that lie dormant beneath the soil surface. This investigation addressed the issue of identification of below-ground woody structures. The first objective was to develop a method that used molecular tools to identify woody plant species from subsoil tissue samples. The second objective was to develop a key in which molecular markers served as criteria for the identification and differentiation of selected tree and shrub species common to the mountains of northeast Oregon and southeast Washington. Application of restriction fragment length polymorphism (RFLP) analysis of polymerase chain reaction (PCR)-amplified rbcL appears to be a reliable method to identify and differentiate 15 plants to the genus level. Two restriction enzymes, Dpn II and Hha I, provided restriction site polymorphisms in the PCR product. The fragment number and length were used to develop an identification key. However, plants not analysed in this 'exploratory key' might share the same banding patterns, resulting in a false identification of unknowns.     

Identification and inter-relationship analysis of Bradyrhizobium japonicum strains by restriction fragment length polymorphism (RFLP) and random amplified polymorphic DNA (RAPD)

Genomic DNA of 13 Bradyrhizobium japonicum strains was prepared and analysed by restriction fragment length polymorphism (RFLP) with nif and nod probes, and by random amplified polymorphic DNA (RAPD) with 11 primers of arbitrary nucleotide sequence. Polymorphism was observed in both analyses. The RFLP and RAPD banding patterns of different strains were used to calculate genetic divergence and to construct phylogenetic trees, allowing studies on the relationships between the strains. RFLP with nif and nod probes permitted the separation of the strains into two divergent groups, whereas RAPD separated them into four main groups. RAPD allowed closely related strains to be distinguished.     

东海和黄海主要鱼类的食物竞争

以2000年和2001年在东、黄海两次大面调查所收集的、占总生物量90%的重要生物种类中的鱼类为研究对象,通过分析胃含物获得各饵料成分的重量百分比,用Pianka(1973)提出的公式计算的饵料重叠系数分析了东、黄海主要鱼类之间的食物竞争状况,以了解食物竞争与种群变动和优势种交替之间的相互关系。结果表明:黄海主要鱼类的食物竞争对象主要为太平洋磷虾、脊腹褐虾和,东海主要鱼类的食物竞争对象主要为太平洋磷虾、细条天竺鱼、发光鲷、、七星底灯鱼和带鱼。东、黄海鱼类通过摄食种类、摄食食物大小、摄食时间和栖息地的分化来减少食物竞争,从而维持群落结构的动态平衡。渔业资源群落结构的变化将导致食物竞争状况发生改变;鱼类食物竞争状况也会影响种群动态,但要确定食物竞争程度还需进一步深入研究     

黄海和东海营养盐分布及其对浮游植物的限制

根据1997～1999年黄海和东海4个季节的现场调查资料,分析探讨了黄海、东海的营养盐分布特征及其对浮游植物生长的限制状况．结果表明,在长江口以东及其东北部海域终年存在一个范围很大的营养盐高值区．分析表明,这些营养盐主要来自长江冲淡水的扩展及苏北沿岸流的输送．此外,还获得了1998年长江流域特大洪水期间,迄今被观测到的长江冲淡水中营养盐的最大扩展范围,计算并研究了黄海、东海上层水中Si／N／P比值,结果表明,黄东海上层水中Si／N比值较高,Si不会成为黄东海浮游植物生长的限制因子;但在南黄海南部尤其是西南部、东海近岸及长江口以东海域,N／P比值很高(>30),说明与一般海洋环境的情况不同,黄海、东海有很大一部分海域浮游植物的生长受磷限制,而不是受氮限制．     

Seasonal variations in colonization dynamics of periphytic protozoa in coastal waters of the Yellow Sea,northern China

The colonization features of periphytic protozoa have proved to be a useful tool for indicating water quality status in aquatic ecosystems. In order to reveal the seasonal variations in colonization dynamics of the protozoa, a 1-year baseline survey was carried out in coastal waters of the Yellow Sea, northern China. Using glass slides as artificial substrates, a total of 240 slides were collected at a depth of 1 m in four seasons after colonization periods of 3, 7, 10, 14, 21, and 28 days. A total of 122 ciliate species were identified with 21 dominant species. The colonization dynamics of the protozoa were well fitted to the MacArthur-Wilson and logistic models in all four seasons (P < 0.05). However, the equilibrium species numbers (S_eq), colonization rates (G), and the time to 90% S_eq (T_90%) represented a clear seasonal variability: (1) more or less similar levels in spring and autumn (S_eq = 29/23; G = 0.301/0.296; T_90%=7.650/7.779); (2) with a significant difference in summer and winter (S_eq = 32/121; G = 0.708/0.005; T_90% = 3.252/479.705). Multivariate approaches demonstrated that the exposure time for the species composition and community structure of the protozoa to an equilibrium period were 10–14 days in spring and autumn, but less and more time periods were needed in summer and winter, respectively. Based on the results, we suggest that the colonization dynamics of periphytic protozoa were different within four seasons, and an optimal sampling strategy for monitoring surveys should be modified during different seasons in marine ecosystems.     

Genetic characterization of the scyphozoan jellyfish Aurelia spp. in Chinese coastal waters using mitochondrial markers

Blooms of the moon jellyfish Aurelia spp. have occurred in the harbors and coastal waters around the world. The phylogenetic relationship and genetic characterization of Aurelia spp. was determined along the Chinese coastal waters based on sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene. The molecular analysis confirmed that all samples collected in Chinese coastal waters were Aurelia sp.1. We also analyzed the phylogenetic and population genetic structure of Aurelia sp.1 using the newly generated sequences supplemented with existing data from previous studies. The phylogenetic analyses of the COI regions did not support geographically restricted groups among the global samples of Aurelia sp.1. Analysis of molecular variance (AMOVA) indicated a complex genetic population structure and pattern of connectivity. Populations of Aurelia sp.1 were highly structured between most sampling sites over distances as small as 100 km (Rizhao and Qingdao) in certain cases. However, non-significant pairwise F_ST values were also observed between short geographic distances (Yantai, Rongcheng and Qingdao) and relatively distant sampling sites (Caofeidian, Rizhao and Japan). The life-cycle characteristics, together with the prevailing ocean currents in this region and possible anthropogenic introduction, were proposed and discussed as the main factors that determined the genetic patterns of Aurelia sp.1.     

氨基酸在黄东海食物网关键种——鯷鱼（Engraulis japonicus）食物链中的传递

采用活体饵料对黄东海生态系统食物网关键种食物链的中下营养层次"浮游植物-中华哲水蚤(Calanus sinicus)-鯷鱼(Engraulis japonicus)"进行了室内模拟实验研究,以了解氨基酸在该食物链中的传递过程.通过76 d的培养实验,对采集样品做了14种氨基酸含量的定量分析.结果表明,在3个营养层次中中华哲水蚤起着十分关键的承上启下作用,它不仅将小球藻的植物性蛋白转化为动物性蛋白,大幅度地提高了赖氨酸的含量,而且将氨基酸总含量从小球藻的6.10%提高到24.16%.作为该食物网主要经济鱼类重要饵料的鯷鱼则进一步将氨基酸含量提高到27.06%.中华哲水蚤的氨基酸相对组成与小球藻有明显的相关性(r=0.606,p＜0.05),其中7种必需氨基酸的相关性相对较弱,而非必需氨基酸的相关性明显较强.鯷鱼的食性由合成饵料转变为活体中华哲水蚤时,其氨基酸量也随饵料的改变而有所变化,从与合成饵料相关转为与中华哲水蚤有更紧密的相关.鯷鱼排泄粪便中的氨基酸含量主要由新陈代谢的生理过程所决定.     

春季和秋季东、黄海陆架区大型网采浮游动物群落划分

根据2000年秋季和2001年春季对黄、东海大面调查中浮游生物大网（孔径500μm）采集的浮游动物样品,运用多元分析方法对陆架区内的浮游动物组成、分布、群落进行了研究。结果表明,春、秋两季陆架区浮游动物均可划分为5个群落：i黄海沿岸群落;ii黄海中部群落;iii黄、东海交汇水混合群落;iv东海近岸混合水群落;v东海外陆架高温高盐群落。各群落的种类组成及地理分布存在一定的季节差异。     

A simple restriction fragment length polymorphism (RFLP) assay to discriminate common Porphyra (Bangiophyceae, Rhodophyta) taxa from the Northwest Atlantic

The identification of Porphyra species hashistorically been difficult because of the lack of distinguishing morphologicaland ecological characters. We developed a restriction fragment lengthpolymorphism (RFLP) assay, based on inter-specific sequence variation inthe ribulose bisphosphate carboxylase oxygenase largesubunit (rbcL) gene andrbcL-rbcS intergenic spacer, toprovide a simple and effective tool for screening and sorting large collectionsof Porphyra from the Northwest Atlantic. A singlerestriction digest (Hae III) discriminates betweenmultiplePorphyra species including one cryptic taxon; anadditionalenzyme (Hind III) was necessary to distinguish between theclosely related P. leucosticta and an introducedspecies P. yezoensis.     

Fish assemblage structure in the East China Sea and southern Yellow Sea during autumn and spring

Based on bottom trawl surveys in autumn 2000 and spring 2001, the fish assemblage structure in the southern Yellow Sea and the continental shelf of the East China Sea was analysed. Four groups of fishes were identified for each season by the two-way indicator species analysis (TWIA). Although seasonal migration caused a slight difference in fish assemblages between autumn and spring, two major groups of fishes, corresponding to the Yellow Sea and East China Sea were identified. Inshore and offshore groups were subsequently separated. Changes in water depth may be most important in the separation of the groups in the offshore waters of the East China Sea. Temperature affected the groupings between north and south, particularly in the central part of the Yellow Sea. Here, the cold water mass affected the species composition which was low in diversity and different from the other areas.     

Spatial, seasonal and species variations of harmful algal blooms in the South Yellow Sea and East China Sea

The occurrences of harmful algal blooms (HABs), in terms of frequency and area in the Chinese coastal waters, have been increasing since 1980s and caused considerable economic losses. In the present study, we have analyzed spatial and seasonal characteristics of HAB events in the southern Yellow Sea and East China Sea along Chinese coast from 1933 to 2004. With a total 435 HAB records, the most frequent HAB occurrence area (FHA) is off the Yangtze River mouth and another two FHA areas are located south of the Yangtze River estuary along about isobaths of 30–60 m coastal water in the East China Sea. The time of HAB occurrence shifted during our study period: from autumn (August–October) before 1980s to July–August in 1980s, during May–July in 1990s, and May–June for the period of 2000–2004. Causative species were found to be different: Noctiluca scintillans and Skeletonema costatum were dominant causative species prior to 2000; and Prorocentrum donghaiense Lu was dominant from 2000 to 2004 and also caused large blooms in May. Trichodesmium sp. caused many HABs in autumn (August–October) prior to 1980s with only one HAB between 1980 and 2004. The changes of the dominant HAB species may have affected the timings of HAB occurrence, as well as the increasing HAB-affected areas in recent years.     

Impact of Microzooplankton and Copepods on the Growth of Phytoplankton in the Yellow Sea and East China Sea

Dilution and copepod addition incubations were conducted in the Yellow Sea (June) and the East China Sea (September) in 2003. Microzooplankton grazing rates were in the range of 0.37–0.83 d⁻¹ in most of the experiments (except at Station A3). Correspondingly, 31–50% of the chlorophyll a (Chl a) stock and 81–179% of the Chl a production was grazed by microzooplankton. At the end of 24 h copepod addition incubations, Chl a concentrations were higher in the copepod-added bottles than in the control bottles. The Chl a growth rate in the bottles showed good linear relationship with added copepod abundance. The presence of copepods could enhance the Chl a growth at a rate (Z) of 0.03–0.25 (on average 0.0691) d⁻¹ ind⁻¹ l. This study, therefore parallels many others, which show that microzooplankton are the main grazers of primary production in the sea, whereas copepods appear to have little direct role in controlling phytoplankton.     

Biodiversity variability of macrobenthic in the Yellow Sea and East China Sea between 2001 and 2011

In this study, we compared the biodiversity and ecological status of macrobenthos between 2001 and 2011 in terms of species composition, dominant species, abundance, biomass, diversity, and secondary productivity of macrobenthos in the Yellow Sea and East China Sea. The results indicate that the species abundances, biomass, and diversity in spring 2011 were all lower than those in autumn 2000 and spring of 2001. Most of the dominant species have changed from 2001 to 2011, with the exception of the echinoderm Ophiura sarsii vadicola that was dominant in these years. Small-sized animal species have increased possibly due to gradual environment deterioration such as the pollution and the climate warmer.     

东、黄海春秋季小型底栖生物丰度和生物量研究

《北斗号》调查船分别于 2 0 0 0年 10月和 2 0 0 1年 4月在 2 6°N至 36°N,12 0°E至 12 6°30′E东、黄海陆架浅水区调查中进行了小型底栖生物的取样。研究表明 ,两个航次 (秋季、春季 )小型底栖生物的平均丰度分别为 6 5 4 .2 5± 4 4 1.72 ind/10 cm2 和342 .0 0± 2 5 2 .0 0 ind/10 cm- 2 ,平均生物量分别为 80 7.0 6± 5 17.89μg dwt/10 cm2 和 2 85 .2 5± 173.72μg dwt/10 cm2 ;平均生产量分别为 72 6 3.5 8± 4 6 6 4 .18μg dwt/(10 cm2· a)和 2 5 6 7.2 8± 15 6 3.5 0 μg dwt/(10 m2· a)。两个航次小型生物的平面分布类似 ,即高密度和高生物量区分布在水深等深浅 5 0 m左右的站位上 ,特别是在长江口以南的浙江沿海。共鉴定出 14个小型生物类群 ,按丰度自由生活海洋线虫是最优势的类群 ,秋、春季两个航次的优势度分别为 87.2 %和 91.2 %。其他优势类群依次为底栖桡足类、多毛类和动吻类 ;按生物量优势依次为多毛类 38.1%～ 5 4 .0 % ,线虫 2 8.3%～ 38.1%和桡足类 9.0 %～ 9.4 %。垂直分布的研究表明 ,91%的小型生物分布在 0～ 5 cm的表层内 ,线虫和桡足类分布在 0～ 2 cm的比例分别为 6 3%和 86 %。相关分析表明 ,小型底栖生物的数量分布与粘土含量 (% )、粉砂粘土含量 (% )和中值粒