Visualization of temporal change in soundscape power of a Michigan lake habitat over a 4-year period

Soundscape Ecology is an emerging area of science that does not focus on the identification of species in the soundscape but attempts to characterize sounds by organizing them into those produced by biological organisms such as birds, amphibians, insects or mammals; physical environmental factors such as thunder, rainfall or wind; and sounds produced by human entities such as airplanes, automobiles or air conditioners. The soundscape changes throughout the day and throughout the seasons. The soundscape components that create the sound occur at different frequencies. A set of metrics termed soundscape power was computed and visualized to examine the patterns of daily and seasonal change in the soundscape.Automated recorders were used to record soundscape samples every half hour for one minute duration from six sites on an uninhabited island in Twin Lakes located near Cheboygan in Michigan's northern Lower Peninsula. Each recording was divided into 1 kHz frequency intervals and visualization tools were used to examine the soundscape power in each interval during 48 half-hour time segments from April–October for four consecutive years. Daily patterns of soundscape power change were also examined during the seven month sample period. To synthesize the data set, three dimensional contour plots were used to visualize day of the year (x), time of day (y) and soundscape power (z) for several frequency intervals. A further synthesis was developed to visualize soundscape change using a Normalized Difference Soundscape Index (NDSI) which is a ratio of low to high frequencies.The visualization of the soundscape revealed discrete patterns in the soundscape including striking changes in the time of the occurrence of dawn and dusk choruses. The patterns in the soundscape were remarkably similar over the four-year investigation. Soundscape power in the lower frequency examined (1–2 kHz) was a dominant feature of the soundscape at Twin Lakes and the low frequency soundscape power was negatively correlated with higher frequency sounds.The soundscape power metrics and the visualizations of the soundscape produced in this study should provide a means of rapidly synthesizing large numbers of recordings into meaningful patterns to examine soundscape change. This is especially useful because of the need to develop indices of ecological metrics based on soundscape attributes to assist resource managers in making decisions about ecosystem integrity. Visualization can also be of immense benefit to examine patterns in large soundscape time series data sets that can be produced by automated recording devices.     

Remote sensing image data and automated analysis to describe marine bird distributions and abundances

Advances in image data capture with airborne digital cameras and in object-based image analysis (OBIA) have provided a basis for new arenas of applied remote sensing, one of which is the direct counting and mapping of animal individuals. The derived data represents significant inputs to population size estimation and study of animal–habitat interactions. One growing application is bird distributions and abundances in relation to EIAs for marine installations such as offshore wind farms and sea crossing transportation infrastructure. The ornithological surveys in relation to the EIA process concerning the Burbo Bank Extension and Walney Extension offshore wind farms that are being undertaken jointly by Aarhus University and BLOM-UK are an example of the former, with monthly surveys of two offshore areas (total area ca. 670 km²) in the Irish Sea. Image coverage comprises acquisition of 4 cm and 3 cm image data. Object based image analysis methods are used to localise marine birds. This paper describes the data processing and analysis procedures used. It presents examples of representations in these image data of five bird species. Examples of non-bird ‘background’ image patterns that can impact the bird localisation possibilities are presented along with developed countering-strategies. Results of initial assessments of levels of bird under-mapping by the OBIA method are given; the reported overall success level from 18 image frames with respect to under-mapping is over 92%.     

Acoustic patterns at the Samford Ecological Research Facility in South East Queensland,Australia: The Peri-Urban SuperSite of the Terrestrial Ecosystem Research Network

Acoustic signals that emanate from ecosystems are an important ecological variable which can provide evidence of current ecological condition as well as ecological change over time. The Terrestrial Ecosystem Research Network (TERN) established protocols to record sounds in ten SuperSites distributed throughout Australia with the objective of characterizing the soundscape in a representative landscape in different regions of Australia. This acoustic monitoring system enables a comparison of the soundscapes within and between Australian regions to determine similarities and differences in these landscapes and regions.This research quantifies the soundscape patterns in one of these SuperSites, Samford Ecological Research Facility (TERN-SERF), which is part of the South-East Queensland Peri-Urban SuperSite. An analysis and visualization of patterns in the soundscape was conducted using a continuous acoustic recording collected at TERN-SERF. The recording was made using a Song Meter (SM2) in a representative wooded habitat at TERN-SERF from 1 August to 30 September 2013. The recording was made in 16-bit stereo at 44 kHz and stored in wav file format. The recording was split into 1-minute-long recordings comprising 86,196 records and then sub-sampled at a 30-minute interval, providing 2878 one-minute-long recordings every 1/2 h. Soundscape metrics were computed for each of the two recording intervals. Soundscape power values were computed for each of ten frequency intervals (1–11 kHz) for both the 1-minute and the 30-minute interval recordings. In addition, six acoustic indices were computed from each recording.The acoustics metrics derived from the two sets of recordings (1-minute and 30-minute recording intervals) were examined to determine if they revealed different patterns. Several soundscape metrics were calculated for each recording including ten soundscape power values at 1 kHz frequency intervals and six acoustics indices. The soundscape shows a dynamic but consistent pattern over time of day during the monitoring period, depending on the metric examined. The metrics revealed different soundscape patterns. All soundscape power values at 1 kHz frequency intervals defined the dawn and dusk chorus, some more distinctly than others. Three of six acoustic indices also changed abruptly at the dawn chorus. No significant difference was found when soundscape metrics were compared between the 1-minute (high resolution) and 30-minute (lower resolution) recording intervals. A t-test was used to compare the mean values of ten soundscape power frequency intervals (p = 0.44) and the mean values of six acoustics indices (p = 0.41).Sounds were identified in 180 recordings made at 0530 h, 0600 h and 0630 h in the 1-minute long 30-minute interval recordings each day during the recording period (August and September). Sixty-seven species of birds were identified. Soundscape metrics were correlated with avian species counts and calls by all species using a correlation threshold of r > 0.7. This analysis revealed that soundscape power at the frequency interval 3–4 kHz was correlated with both the number of species (r = − 0.927) and total calls (r = − 0.996) over the three time periods. Three indices, the ADI (r = 0.953, r = 0.709), the AEI (r = 0.978, r = 0.774) and (H) (r = 0.795, r = 0.985) were similarly correlated as was an index derived soundscape power, the Shannon-Weaver Index (r = − 0.997, r = − 0.849). Other indices were correlated (r > 0.7) with only the number of avian species or only the number of calls.This methodology establishes an analysis protocol for analyzing large acoustic data sets, and demonstrates the effectiveness of using acoustic metrics for summarizing and interpreting long-term recordings.     

Shape complexity of space used by American black bears influenced by sex and intensity of use

Disentangling the complexities that influence animal space use poses substantial challenges based on decision trade-offs and constraints imposed on animals. Optimal decisions suggest that the spatial complexity of home-range shapes should be inversely related to energy conservation and fitness. Hence, the most beneficial shape should be the circle. We evaluated whether shape complexity (i.e., an index of circularity) of home ranges was influenced by two extrinsic (spatial heterogeneity, preferred habitat [i.e., deciduous forest]), and three intrinsic (sex, season [breeding, non-breeding], intensity of use) factors, with intensity of use indexed as contours containing core and peripheral areas. We estimated utilization distributions of 39 radiomarked adult American black bears (Ursus americanus), a habitat generalist, using fixed-kernel techniques and estimated 50% (core area) and 95% (peripheral area) contours. We fit a set of 47 models using linear modeling and ranked models using small-sample Akaike Information Criterion. Coefficients for the best model were the intrinsic factors intensity of use (reference category = core; 0.118; 95% CL = 0.064–0.173), sex (reference = female; 0.105; 95% CL = 0.043–0.167), and intercept (0.229; 95% CL = 0.186–0.272). Shape complexity was less for core areas than peripheral areas and less for females than males. Considering complex resource selection patterns within a fragmented landscape, both sexes appeared to use energy-maximizing strategies, although the increase in shape complexity for males may be an allometric relationship based on size dimorphism. Our approach supported the phenomenon of optimality as manifested through home-range shape complexity, but we suggest that assessment of this phenomenon for habitat specialists may yield different results, including the potential importance of intrinsic factors based on more restrictive limiting factors.     

Nonlinear synchronization assessment between atrial and ventricular activations series from the surface ECG in atrial fibrillation

Atrial fibrillation (AF) is the most common form of arrhythmia encountered in clinical practice. Its presence causes a rapid and irregular ventricular response, being the topic of intensive research in rate control therapies of AF. To this respect, recent studies suggest that ventricular response is notably influenced by atrial activity (AA) temporal organization. However, the interdependency between atrial and ventricular activations has not been adequately explored to date in real-life AF patients. The present work introduces a novel methodology to quantitatively assess synchronization and coupling between real atrial and ventricular activation series. Furthermore, the method operates on surface ECG recordings, thus providing an easy and cost-effective way to be applied. The method is based on a nonlinear index, such as cross-sample entropy (CSE), which estimates the conditional probability to find similar patterns within both activation series. The study has been carried out on patients with paroxysmal and persistent AF in order to be applied over atrial activation series with different properties in their organization. Results showed a statistically significant positive correlation between AA organization and the synchronization between atrial and ventricular activations (R = 0.53, p < 0.01). Furthermore, higher CSE values were observed for persistent (0.759 ± 0.053) than for paroxysmal AF episodes (0.662 ± 0.091), thus suggesting more synchronization between atrial and ventricular activations in paroxysmal AF. As a consequence, CSE provided findings consistent with previous works and could be used to reveal clinically useful information in the improvement of current rate control therapies, which are mainly focused on controlling ventricular rate without paying much attention to the atrial fibrillatory process.     

The effects of fire on woody plant encroachment are exacerbated by succession of trees of decreased palatability

The ingression of woody plants into the grassy layer of savannas and grasslands has become a global concern. The increase of woody plants has been primarily attributed over grazing, fire and more recently to the increase of atmospheric CO₂. We used long-term observations and analyses to assess changes in woody vegetation in Ithala Game Reserve (IGR), South Africa. Textural analysis of aerial photographs was used to detect changes in woody vegetation, from 1943 to 2007 in Ithala Game Reserve (IGR), South Africa. Daily rainfall data from 1905 to 2009 were used in a time-series analysis to determine if rainfall patterns have changed. The time-series analysis showed that the low magnitude (0–10 mm) rainfall events decreased from 1916 to 2009 and high magnitude rainfall events increased (10–20 and >20 mm). The mean annual rainfall increased from ～700 to ～850 mm from the 1930s to the 2000s. This change in rainfall was a key factor in the increase in woody vegetation from 1943 to 2009. We also used field data from the same reserve collected over 30 years to assess the increases in tree cover. Tree cover and density increased significantly by 32.5% and 657.9 indiv ha^?1 respectively, over 64 years. Before the proclamation of IGR in 1972, increases in woody vegetation from 1943 were non-significant. After the proclamation of IGR, herbivore population numbers and spatial distribution influenced the accumulation of grassy biomass required to fuel fires. In areas with reduced fuel loads, the consequential suppression of fire accelerated the rate of woody plant invasion into savannas. The increase in woody vegetation coincided with a decrease in palatable (e.g. Acacia gerrardii and Acacia davyi) and an increase in unpalatable woody plants. The avoidance of the unpalatable trees (e.g. Euclea and Searsia species) by large mammalian herbivores has allowed these trees to increase in density relatively unhindered.     

A highly sensitive and robust UPLC–MS with electrospray ionization method for quantitation of taxifolin in rat plasma

A sensitive ultra performance liquid chromatography–mass spectrometry method has been developed and validated for the quantification of taxifolin in rat plasma. Following liquid/liquid extraction by ethyl acetate, the analytes were separated on a Sunfire? (2.1 mm × 50 mm, 3.5 μm) column and analyzed in the selected ion recording with a negative electrospray ionization mode. The method was linear over the concentration range of 6–6750 ng/mL. Intra- and inter-day precisions were all within 8% and accuracy ranged from 92.9% to 105.1%. The lower limit of quantification was 6 ng/mL. The present method was successfully applied to the estimation of the pharmacokinetic parameters of taxifolin following intravenous and oral administration to rats. The absolute bioavailability of taxifolin was 0.17% in rat.     

The breeding management affects fresh and cryopreserved semen characteristics in Melopsittacus undulatus

Melopsittacus undulatus is a companion parrot worldwide diffused. Many parrots are considered endangered or vulnerable. The preservation of semen is crucial in endangered species, thus, M. undulatus could be a good model to study sperm characteristics and semen cryopreservation in these other endangered parrots. In this study the effect of the breeding management (males bred in promiscuous aviary or in couple) on sperm characteristics (motility, membrane integrity and morphometry) of fresh and cryopreserved semen was evaluated. The computer-assisted sperm analysis (CASA) revealed a significant effect of the husbandry method on semen characteristics in budgerigars: male housed in couple with the female in individual cages allowed the higher results in term of both semen quantity and sperm quality. Total and progressive motility were significantly higher in males bred in couple (68.7 ± 8.9% and 54 ± 15.9%, respectively) than in promiscuous aviary (48.3 ± 15.1% and 24.4 ± 12.4%, respectively), such as sperm velocity (average path velocity, straight line velocity, and curvilinear velocity). The type of sperm movement (amplitude of lateral head displacement, beat cross frequency, straightness, and linearity), sperm membrane integrity and morphometry parameters seemed not affected by the husbandry method. The standardization of a CASA procedure for the semen analysis in M. undulatus allow further studies on parrot semen manipulation and cryopreservation, but the method used for the breeding of the male could have a significant effect on the semen quality.     

Impact d’une réduction d’activité sur la mesure de la fraction d’éjection du ventricule gauche sur caméra D-SPECT

IntroductionRadionuclide ventriculography provides a reproducible measurement of the left ventricular fraction ejection (LVEF) but with a significant body radiation (effective dose of 5,9 mSv for the injection of 850 Mbq of ^99mTc). The highly sensitive semi-conductor (CZT) cameras could allow decreasing the injected activity by a factor 3, similarly to that of myocardial perfusion imaging. Our study was aimed to determine whether the LVEF measurement provided by radionuclide ventriculography on the CZT D-SPECT camera is impacted by a 70% reduction in recorded counts.Materials and methodsAfter the in vivo labeling of red blood cells with 850 MBq of ^99mTc, 49 patients completed a conventional 2D recording (Conv-2D) on Anger camera followed by a 3D recording on the D-SPECT camera (3D-100%). The CZT recordings of all projections were subsequently shortened to 30% of their initial durations (3D-30%) in order to assess the LVEF measured with a 70% reduction in recorded counts.ResultsMean LVEF values were 62.7 ± 11.1% on Conv-2D and higher on both 3D-100% (66.8 ± 14.8%, P < 0.001) and 3D-30% (66.3 ± 15.7%, P < 0.001). The correlation coefficients with the LVEF determined with the reference Conv-2D method were equivalents for 3D-100% (r² = 0.73) and 3D-30% (r² = 0.70) and with a similar level of overestimation for the highest LEVF values.ConclusionA 70% reduction in recorded counts does not significantly impact the LVEF measured with radionuclide ventriculography on the CZT D-SPECT camera. These values are coherent with those obtained with the reference 2D method but with a clear overestimation for the highest LVEF values.     

A habitat quality indicator for common birds in Europe based on species distribution models

The EU 2020 Biodiversity Strategy requires the gathering of information on biodiversity to aid in monitoring progress towards its main targets. Common species are good proxies for the diversity and integrity of ecosystems, since they are key elements of the biomass, structure, functioning of ecosystems, and therefore of the supply of ecosystem services. In this sense, we aimed to develop a spatially-explicit indicator of habitat quality (HQI) at European level based on the species included in the European Common Bird Index, also grouped into their major habitat types (farmland and forest). Using species occurrences from the European Breeding Birds Atlas (at 50 km × 50 km) and the maximum entropy algorithm, we derived species distribution maps using refined occurrence data based on species ecology. This allowed us to cope with the limitations arising from modelling common and widespread species, obtaining habitat suitability maps for each species at finer spatial resolution (10 km × 10 km grid), which provided higher model accuracy. Analysis of the spatial patterns of local and relative species richness (defined as the ratio between species richness in a given location and the average richness in the regional context) for the common birds analysed demonstrated that the development of a HQI based on species richness needs to account for the regional species pool in order to make objective comparisons between regions. In this way, we proved that relative species richness compensated for the bias caused by the inherent heterogeneous patterns of the species distributions that was yielding larger local species richness in areas where most of the target species have the core of their distribution range. The method presented in this study provides a robust and innovative indicator of habitat quality which can be used to make comparisons between regions at the European scale, and therefore potentially applied to measure progress towards the EU Biodiversity Strategy targets. Finally, since species distribution models are based on breeding birds, the HQI can be also interpreted as a measure of the capacity of ecosystems to provide and maintain nursery/reproductive habitats for terrestrial species, a key maintenance and regulation ecosystem service.     

Performance evaluation of constructed wetlands in a tropical region

Five emergent plant species were compared for their effectiveness in treating contaminants in a wetland system constructed on a military base in El Salvador. The system consisted of the subsurface flow (SSF), open water (OW) and free surface flow (SF) wetlands with a combined flow capacity of up to 151.4 m³ d^?1. Reliability and consistent performance in extreme conditions, such as those occurring during the tropical dry or wet seasons were important evaluation criteria. The discontinuous flow patterns typical of tropical climates necessitated the use of water balance calculations using climatic data such as rainfall and evapotranspiration. System characterization was achieved by computation of daily input and output mass loading rates for each individual constituent. Results suggest that Phragmites and Brachiaria were the most effective plants in SSF wetland. Brachiaria provided the added benefit of serving as a source of fodder and proved proficient, with N and P uptakes of 1.5–3.14% and 0.17–0.25% per dry plants’ biomass, respectively. Typha yielded the highest dry season removal efficiency within the SF (BOD₅: 80.78 ± 9.35%, COD: 65.18 ± 19.6%, TN: 58.59 ± 19.3%, oil and grease: 78.34 ± 10.55%, total dissolved phosphorus: 66.5 ± 20.7%). Phragmites–Typha treatment subset performed better year-round than either Thalia–Thalia or Brachiaria–Cyperus. Evaluated plants were capable of surviving and proliferating in extreme tropical climates.     

Trophic ecology of the Grey Wagtail Motacilla cinerea before and during the breeding season in the region of Bejaia (Algeria)

The diet composition of the Grey Wagtail Motacilla cinerea of the Babor Range is followed by analysis of faecal samples (90 faeces) before and during the breeding season 2010. The Grey Wagtail's diet varies depending on the stage of the breeding cycle at the southern edge of their breeding area in North Africa (Bejaia). The diet consists predominantly of aquatic preys (51.79%), with Coleoptera being the most frequent constituent (n = 331, 45.5%). During the pre-laying period (February–March), the diet was variable (91 prey-taxa and H’ = 3,36 bits) and preys of medium size (5 to 8 mm) were most common. During the incubation period (April–May), preys were mainly aquatic (60%) and larger (20 to 32 mm). At the end of the breeding season (June–July), there was a greater occurrence of terrestrial preys (31 aquatic versus 30 terrestrial taxa).     

Predominance of terrestrial organic matter in sediments from a cyanobacteria- blooming hypereutrophic lake

Although an understanding of the quantity and quality of sedimentary organic matter (SOM) pools is necessary to design sound environmental management strategies for lacustrine systems, the characterization of organic matter sources and the assessment of their relative contributions to eutrophic and inland lake sediments remain insufficient. In this study, the contribution of potential organic matter sources to sediments in shallow and hypereutrophic lake Taihu, China was assessed on the molecular level using source-specific fatty acid biomarkers. The results indicated that SOM was composed mainly of terrestrial plants with a maximal contribution of 45.3 ± 2.4% to the total organic carbon, which accounted for approximately 66% among the determined organic matter sources. Evidence suggests the terrestrial plants remained in a fresh state in surface sediments: the correlation (R² = 0.62, p < 0.05) between bacterial and terrestrial plant carbon was strong. On the other hand, aquatic plant and bacterial carbon contributed 5–15% to the total organic carbon, which was followed by the faint contribution (<5% of total organic carbon) of algae-derived organic carbon including cyanobacteria, diatoms, and dinoflagellates. The results provided details of the contributions of SOM sources, illustrating the usefulness of fatty acid biomarkers in discriminating organic matter sources within lake environments. Although organic matter sources of sediments varied in spatial and temporal patterns, the strong correlation between terrestrial plant and total organic carbon (R² = 0.60, p < 0.05) indicates that terrestrial plants were the dominant source in lake sediments.     

A comparison of surface and fine wire EMG recordings of gluteus medius during selected maximum isometric voluntary contractions of the hip

Electromyographic (EMG) studies into gluteus medius (GMed) typically involve surface EMG electrodes. Previous comparisons of surface and fine wire electrode recordings in other muscles during high load isometric tasks suggest that recordings between electrodes are comparable when the muscle is contracting at a high intensity, however, surface electrodes record additional activity when the muscle is contracting at a low intensity. The purpose of this study was to compare surface and fine wire recordings of GMed at high and low intensities of muscle contractions, under high load conditions (maximum voluntary isometric contractions, MVICs). Mann–Whitney U tests compared median electrode recordings during three MVIC hip actions; abduction, internal rotation and external rotation, in nine healthy adults. There were no significant differences between electrode recordings in positions that evoked a high intensity contraction (internal rotation and abduction, fine wire activity >77% MVIC; effect size, ES < 0.42; p > 0.277). During external rotation, the intensity of muscle activity was low (4.2% MVIC), and surface electrodes recorded additional myoelectric activity (ES = 0.67, p = 0.002). At low levels of muscle activity during high load isometric tasks, the use of surface electrodes may result in additional myoelectric recordings of GMed, potentially reflective of cross-talk from surrounding muscles.     

The economic effects of an estrus synchronization protocol using prostaglandin in beef heifers

We estimated the effect of estrus synchronization on reproduction, production and economic outcomes in 272 beef heifers randomly allocated to a synchronized Test group or an unsynchronized Control group. The Test group received AI upon estrus detection for 6 days followed by PGF2 treatment of heifers that had not shown estrus by day 6 (PGF/6). In both groups AI was continued for 50 days, followed by a 42-day bull breeding period. Heifers were followed through their second breeding season and until they had weaned their first calves. Synchronization resulted in a reduction in median days to first insemination (8 vs. 11 in the Test and Control groups, respectively, P < 0.01) and median days to calving of calves born to AI (14 vs. 20, P = 0.04). There was no significant difference in pregnancy rate to the AI period (60.0% vs. 51.8%, P = 0.18), final pregnancy rate (82.2% vs. 83.2%, P = 0.87) or pregnancy rate to the subsequent breeding season (96.0% vs. 95.0%, P = 1.00). Although mean calf weaning mass was not significantly different (207.0 kg vs. 201.4 kg, P = 0.32), the total mass of calves weaned in this study was 14,843 kg vs. 13,060 kg and the benefit: cost ratio for synchronization was 2.8. It was therefore concluded that a PGF/6 protocol may affect the total mass of calves weaned by changing days to calving, weaning rate, the ratio of male: female calves born and/or the birth mass of calves.     

Cluster analysis and classification of heart sounds

Acoustic heart signals, generated by the mechanical processes of the cardiac cycle, carry significant information about the underlying functioning of the cardiovascular system. We describe a computational analysis framework for identifying distinct morphologies of heart sounds and classifying them into physiological states. The analysis framework is based on hierarchical clustering, compact data representation in the feature space of cluster distances and a classification algorithm. We applied the proposed framework on two heart sound datasets, acquired during controlled alternations of the physiological conditions, and analyzed the morphological changes induced to the first heart sound (S1), and the ability to predict physiological variables from the morphology of S1. On the first dataset of 12 subjects, acquired while modulating the respiratory pressure, the algorithm achieved an average accuracy of 82 ± 7% in classifying the level of breathing resistance, and was able to estimate the instantaneous breathing pressure with an average error of 19 ± 6%. A strong correlation of 0.92 was obtained between the estimated and the actual breathing efforts. On the second dataset of 11 subjects, acquired during pharmacological stress tests, the average accuracy in classifying the stress stage was 86 ± 7%. The effects of the chosen raw signal representation, distance metrics and classification algorithm on the performance were studied on both real and simulated data. The results suggest that quantitative heart sound analysis may provide a new non-invasive technique for continuous cardiac monitoring and improved detection of mechanical dysfunctions caused by cardiovascular and cardiopulmonary diseases.     

Effect of a single subcutaneous injection of melatonin on estrous response and conception rate in goats

The objectives of this study were to evaluate the effect of a single subcutaneous injection of melatonin, on estrous induction and conception rate during the non-breeding season at different times of the year. In Experiment 1 the melatonin powder was dissolved in an oily vitamin A, D, E solution and injected subcutaneously randomly to goats in two dose treatment groups of 20 mg (MLT-20; n = 20) and 40 mg (MLT-40; n = 20) in January (winter). Twenty does were injected with 1 ml vitamin A and served as the control. In the MLT-20 treated goats 70% of the does were in estrus within 20.0 ± 2.0 days, whereas in the MLT-40 group 85% of the does were in estrus within 15.5 ± 2.5 days and 100% and 80% of the does, respectively, conceived on mating with the bucks. Only 10% of the untreated control does exhibited estrus, but none conceived. The breeding season was thus initiated earlier by 1–1.5 months in the treated goats. In Experiment 2, goats were treated with similar MLT-20 and MLT-40 treatments in May (spring), with 20 goats in each treatment group and 20 control goats. The proportion of goats that responded to the melatonin treatments was 80% and 90% in the MLT-20 and MLT-40 treatments, respectively, with no significant differences recorded regarding the estrous response. However, in the MLT-20 treatment group the estrous induction interval was significantly longer (P < 0.05), compared to the MLT-40 treatment. The pregnancy rates were not significantly different for the MLT-20 and MLT-40 treatments, with melatonin resulting in significantly higher pregnancy rates than in the control (88.4% versus 33.3%) and the breeding season initiated 2 months earlier. It could be concluded that a single subcutaneous injection of melatonin can initiate the breeding season (irrespective of the season of the year) earlier by 1–2 months in goats and this could be advantageous when using accelerated breeding systems.     

Variance-based signal conditioning technique: Comparison to a wavelet-based technique to improve spike detection in multiunit intrafascicular recordings

Detection of single unit action potentials (APs) from peripheral nerve recordings is complicated by low signal-to-noise ratio (SNR) due to the activity of nearby muscles, interference from more distant nerve fibers, and thermal noise from the neural interface. In this study, we propose a novel signal conditioning technique for multiunit signals (i.e. a signal comprised of multiple units coming from different nerve fibers), based on the variance to be applied prior to detection of APs. The proposed technique was tested on experimental and simulated intrafascicular recordings; and was compared to a wavelet-based conditioning (also applied before AP detection). The outputs of both conditioning schemes were sent to an AP detection algorithm that used a simple threshold (equal to the standard deviation of the signal). The overall performance of the detection phase was superior when using the wavelet-based conditioned signal especially for SNR ≤ 2 dB. However, when using the variance-based conditioned signal, the AP detection phase resulted in lower number of false positives for SNR > 2 dB. The novel variance-based method improves the SNR by attenuating the background noise between APs and can be applied as pre-conditioning processing for AP detection.     

Genetic trends estimation for body weights of Kermani sheep at different ages using multivariate animal models

The objective of the present study was to estimate genetic trends for body weight traits at different ages in Kermani lambs. Data collected from 1993 to 2006 by the Kermani Breeding Station were analyzed. Genetic trends were estimated for birth weight (BW), weaning weight (WW), 6-month weight (6MW), 9-month weight (9MW) and yearling weight (YW). Maximum number of data was 2654 at birth, but only 1124 at yearling. Different appropriate models for investigation of each trait using multivariate analysis were applied. Variance component were estimated using Simplex procedure and breeding values of animals were predicted with Best Linear Unbiased Prediction (BLUP) methodology under multi-trait animal models. Genetic trends of studied traits were estimated by regressing mean of breeding values on birth year. Direct genetic trends were positive and significant for BW (p < 0.05) WW, 6MW, 9MW and YW (p < 0.01) and were 2, 125, 91, 81 and 156 g/year, respectively. Also, maternal trend for BW was positive and highly significant (p < 0.01) and was 3 g/year.     

Simultaneous quantification of the organophosphorus pesticides dimethoate and omethoate in porcine plasma and urine by LC–ESI-MS/MS and flow-injection-ESI-MS/MS

Dimethoate is an organophosphorus toxicant used in agri- and horticulture as a systemic broad-spectrum insecticide. It also exhibits toxic activity towards mammalian organism provoked by catalytic desulfuration in the liver producing its oxon-derivative omethoate thus inhibiting acetylcholinesterase, initiating cholinergic crisis and ultimately leading to death by respiratory paralysis and cardiovascular collapse. Pharmaco- and toxicokinetic studies in animal models help to broaden basic understanding of medical intervention by antidotes and supportive care. Therefore, we developed and validated a LC–ESI-MS/MS method suitable for the simultaneous, selective, precise (RSD_intra-day 1–8%; RSD_inter-day 5–14%), accurate (intra-day: 95–107%; inter-day: 90–115%), and robust quantification of both pesticides from porcine urine and plasma after deproteinization by precipitation and extensive dilution (1:11,250 for plasma and 1:40,000 for urine). Accordingly, lower limits of quantification (0.24–0.49 μg/ml plasma and 0.78–1.56 μg/ml urine) and lower limits of detection (0.12–0.24 μg/ml plasma and 0.39–0.78 μg/ml urine) were equivalent to quite low absolute on-column amounts (1.1–2.1 pg for plasma and 2.0–3.9 pg for urine). The calibration range (0.24–250 μg/ml plasma and 0.78–200 μg/ml urine) was subdivided into two linear ranges (r² ≥ 0.998) each covering nearly two orders of magnitude. The lack of any interfering peak in 6 individual blank specimens from plasma and urine demonstrated the high selectivity of the method. Furthermore, extensive sample dilution causing lowest concentration of potentially interfering matrix ingredients prompted us to develop and validate an additional flow-injection method (FI-ESI-MS/MS). Validation characteristics were as good as for the chromatographic method but sample throughput was enhanced by a factor of 6. Effects on ionization provoked by plasma and urine matrix from 6 individuals as well as in the presence of therapeutics (antidotes) administered in an animal study were investigated systematically underling in the reliability of the presented methods. Both methods were applied to porcine samples derived from an in vivo animal study.