Can annual cyclicity of protozoan communities reflect water quality status in coastal ecosystems?

With many advantages, many ecological parameters of protozoan communities have been successfully used as a useful bioindicator for bioassessment of water quality in Chinese marine waters. However, as regard the response of the annual cyclicity of protozoan communities to seasonal environmental stress, a further investigation was needed. In this study, the cyclicity of annual variations in community patterns of biofilm-dwelling protozoa was studied based on an annual dataset. Samples were monthly collected, using glass slide method, at four stations, within a pollution gradient, in coastal waters of the Yellow Sea, northern China during a 1-year period. The cyclicity patterns of the microbiota represented a significant spatial variation among four stations. The low value of cyclicity coefficients occurred in heavily polluted area, while the high values were in less stressed areas. Correlation analysis showed that the cyclicity measure was significantly related to environmental variables ammonia, transparency and dissolved oxygen. Thus, it is suggested that the annual cyclicity of protozoan communities may be used as a potential bioindicator of bioassessment in marine ecosystems.     

Self-organizing map and species abundance distribution of stream benthic macroinvertebrates in revealing community patterns in different seasons

Benthic macroinvertebrates are considered to be one of the most representative taxa in assessing the ecological integrity of aquatic ecosystems. Data for benthic macroinvertebrates collected using the Surber sampler were used for analysis at different sampling sites across different levels of pollution. Species Abundance Distribution (SAD) and Self-Organizing Map (SOM) were utilized in combination to reveal both consistency and variability in community compositions under natural and anthropogenic conditions. According to the SOM benthic macroinvertebrates were clustered in different season groups (e.g., “summer”, “autumn–winter”) at the less polluted site. SADs of the sampled communities, however, were overall stable across different seasons except the period from late spring to summer (i.e., low level of abundance for the mid-ranked species in SADs) due to heavy rainfall in the Monsoon climate. Along with increase in degree of pollution, seasonality deceased for both SOMs and SADs. In all seasons, the SAD curves were fitted to a lognormal distribution for the less polluted site while the polluted site was in accordance with a geometric series. The parameters in the SAD models were not significantly different across different seasons. Species in the highest ranks in the SADs were persistently dominant regardless of seasons, while densities of the mid-ranked species were variable in different seasons at the less and intermediately polluted sites. At the severely polluted site a few selected tolerant species showed high densities persistently and variability of densities in different seasons was minimized. Species groups clustered using the SOM also presented stronger persistence in SADs, and were feasible in addressing diverse patterns of species composition and in outlining species associations presented in different sampling sites through ordination and clustering. The combined use of SOM and SAD is highly be suitable in presenting community properties and ecological integrity in stream ecosystems in response to natural variability and anthropogenic disturbances.     

Flower or spikelet? Understanding the morphology and development of reproductive structures in Exocarya (Cyperaceae, Mapanioideae, Chrysitricheae)

Fundamental questions of floral morphology remain unresolved in the grasslike monocots in order Poales, including what constitutes a flower and what constitutes a spikelet. The mapaniid sedges have particularly complex spikeletlike structures, variously interpreted as clusters of flowers or spikelets. Recent phylogenetic studies of Cyperaceae have identified the mapaniid clade as sister to the rest of the family, but the homology of mapaniid reproductive units (RUs) and spikeletlike units (SLUs) to other sedge flowers and spikelets is unclear. We examined reproductive development in the mapaniid Exocarya sclerioides. Inflorescence branches terminated in a SLU with bracts and 1-4 RUs. RUs had four small leaflike structures (LLSs): two lateral LLSs, each associated with a stamen, an abaxial LLS associated with a stamen, and an adaxial LLS. The gynoecium terminated the RU. All RUs were axillary to bracts, and unexpanded bracts and RUs were produced beyond expanded RUs, so SLUs were racemose. RUs developed from a single primordium that initiated two lateral LLSs, then two lateral stamens, then the gynoecium. Initiation of the abaxial LLS and stamen and the adaxial LLS followed. We hypothesize that the RU is a sympodial branch that terminates in a hermaphroditic flower with two stamens and a gynoecium; the two lateral LLSs are halves of a deeply divided prophyll.     

Coupling between taxonomic and functional diversity in protistan coastal communities

The study of protistan functional diversity is crucial to understand the dynamics of oceanic ecological processes. We combined the metabarcoding data of various coastal ecosystems and a newly developed trait-based approach to study the link between taxonomic and functional diversity across marine protistan communities of different size-classes. Environmental DNA was extracted and the V4 18S rDNA genomic region was amplified and sequenced. In parallel, we tried to annotate the operational taxonomic units (OTUs) from our metabarcoding dataset to 30 biological traits using published and accessible information on protists. We then developed a method to study trait correlations across protists (i.e. trade-offs) in order to build the best functional groups. Based on the annotated OTUs and our functional groups, we demonstrated that the functional diversity of marine protist communities varied in parallel with their taxonomic diversity. The coupling between functional and taxonomic diversity was conserved across different protist size classes. However, the smallest size-fraction was characterized by wider taxonomic and functional groups diversity, corroborating the idea that nanoplankton and picoplankton are part of a more stable ecological background on which larger protists and metazoans might develop.     

Immunochemical studies of Shigella flexneri 2a and 6, and Shigella dysenteriae type 1 O-specific polysaccharide-core fragments and their protein conjugates as vaccine candidates

There is no licensed vaccine for the prevention of shigellosis. Our approach to the development of a Shigella vaccines is based on inducing serum IgG antibodies to the O-specific polysaccharide (O-SP) domain of their lipopolysaccharides (LPS). We have shown that low molecular mass O-SP-core (O-SPC) fragments isolated from Shigella sonnei LPS conjugated to proteins induced significantly higher antibody levels in mice than the full length O-SP conjugates. This finding is now extended to the O-SPC of Shigella flexneri 2a and 6, and Shigella dysenteriae type 1. The structures of O-SPC, containing core plus 1-4 O-SP repeat units (RUs), were analyzed by NMR and mass spectroscopy. The first RUs attached to the cores of S. flexneri 2a and 6 LPS were different from the following RUs in their O-acetylation and/or glucosylation. Conjugates of core plus more than 1 RU were necessary to induce LPS antibodies in mice. The resulting antibody levels were comparable to those induced by the full length O-SP conjugates. In S. dysenteriae type 1, the first RU was identical to the following RUs, with the exception that the GlcNAc was bound to the core in the β-configuration, while in all other RUs the GlcNAc was present in the α-configuration. In spite of this difference, conjugates of S. dysenteriae type 1 core with 1, 2, or 3 RUs induced LPS antibodies in mice with levels statistically higher than those of the full size O-SP conjugates. O-SPC conjugates are easy to prepare, characterize, and standardize, and their clinical evaluation is planned.     

A catchment‐scale perspective of plastic pollution

Plastic pollution is distributed across the globe, but compared with marine environments, there is only rudimentary understanding of the distribution and effects of plastics in other ecosystems. Here, we review the transport and effects of plastics across terrestrial, freshwater and marine environments. We focus on hydrological catchments as well‐defined landscape units that provide an integrating scale at which plastic pollution can be investigated and managed. Diverse processes are responsible for the observed ubiquity of plastic pollution, but sources, fluxes and sinks in river catchments are poorly quantified. Early indications are that rivers are hotspots of plastic pollution, supporting some of the highest recorded concentrations. River systems are also likely pivotal conduits for plastic transport among the terrestrial, floodplain, riparian, benthic and transitional ecosystems with which they connect. Although ecological effects of micro‐ and nanoplastics might arise through a variety of physical and chemical mechanisms, consensus and understanding of their nature, severity and scale are restricted. Furthermore, while individual‐level effects are often graphically represented in public media, knowledge of the extent and severity of the impacts of plastic at population, community and ecosystem levels is limited. Given the potential social, ecological and economic consequences, we call for more comprehensive investigations of plastic pollution in ecosystems to guide effective management action and risk assessment. This is reliant on (a) expanding research to quantify sources, sinks, fluxes and fates of plastics in catchments and transitional waters both independently as a major transport routes to marine ecosystems, (b) improving environmentally relevant dose–response relationships for different organisms and effect pathways, (c) scaling up from studies on individual organisms to populations and ecosystems, where individual effects are shown to cause harm and; (d) improving biomonitoring through developing ecologically relevant metrics based on contemporary plastic research.     

Responses of bulbar respiratory neurons to stimulation of receptive fields in the air passages

Extracellular recordings were made of changes in the firing pattern of 74 respiratory neurons in 23 cats anesthetized with Nembutal evoked by blowing atmospheric air into the nose or through an isolated segment of trachea. Respiratory unit (RU) responses were compared with accompanying changes in the activity of inspiratory and expiratory neuromotor units (NMUs) and the intratracheal pressure. These procedures were accompanied by changes in the frequency, depth, and rhythm of respiration and RU and NMU activity was activated or inhibited; RUs of all types responded to these stimuli. Responding RUs were found in various structures of the medullary respiratory center. Most RUs responded differently to stimulation of the air passages and inflation of the lungs. It is concluded that afferent impulses from the nose and trachea spread to all groups of bulbar RUs responsible for generating respiratory movements. This wide extent of the afferent projections of the air passages in structures of the respiratory center could play an important role both in defensive respiratory responses and in the regulation of eupnea.A. A. Bogomolets Institute of Physiology, Academy of Sciences of the Ukrainian SSR, Kiev. Translated from Neirofiziologiya, Vol. 3, No. 6, pp. 620–630, November–December, 1971.     

Daily ocean monitoring since the 1860s shows record warming of northern European seas

Ocean temperatures in most parts of the world are increasing and are expected to continue to rise during the 21st century. A major challenge to ecologists and marine resource managers is to understand and predict how these global changes will affect species and ecosystems at local scales where temperature more directly affects biological responses and species interactions. Here, we investigate historical variability in regional sea surface temperature in two large heavily exploited marine ecosystems and compare these variations with expected rates of temperature change for the 21st century. We use four of the world's longest calibrated daily time series to show that trends in surface temperatures in the North and Baltic Seas now exceed those at any time since instrumented measurements began in 1861 and 1880. Temperatures in summer since 1985 have increased at nearly triple the global warming rate, which is expected to occur during the 21st century and summer temperatures have risen two to five times faster than those in other seasons. These warm temperatures and rates of change are due partly to an increase in the frequency of extremely warm years. The recent warming event is exceeding the ability of local species to adapt and is consequently leading to major changes in the structure, function and services of these ecosystems.     

传粉昆虫下降背景下的授粉生态弹性: 内涵、机制和展望

全球传粉昆虫多样性正在下降, 如何保障农林生态系统传粉功能是当前研究的热点。理论上说, 传粉功能不仅与生态系统的传粉昆虫多样性相关, 还与生态系统的调节能力有关。近年来, 学者们逐渐认识到授粉生态弹性对传粉功能的影响。本文在回顾已有研究的基础之上, 总结传粉昆虫授粉生态弹性的内涵, 厘清授粉生态弹性与工程弹性、稳定性和抗性的异同。目前, 学者对授粉生态弹性形成机制开展广泛探讨, 提出功能冗余假说、密度补偿假说、响应多样性假说、连接周转假说和跨尺度弹性假说, 但这5个假说间的关系仍不清楚, 存在一词多义、词意混淆等现象。我们依次阐述功能冗余假说、密度补偿假说、响应多样性假说、连接周转假说和跨尺度弹性假说, 介绍不同假说中授粉生态弹性形成过程、研究热点和发展动态。通过解析授粉生态弹性的形成机制可知, 5个假说在内涵上存在紧密联系, 它们从不同空间尺度和研究对象下解释传粉昆虫授粉生态弹性的形成机制。未来授粉生态弹性研究将整合传粉昆虫群落动态和传粉功能动态的量化方法, 通过实验验证5个假说的合理性, 并揭示不同假说间的联系, 由此阐明授粉生态弹性的发生条件、形成阈值和动态规律。随着研究的深入, 授粉生态弹性理论有望用于指导农林生态系统传粉功能的经营管理。     

Identifying functional species pool of planktonic protozoa for discriminating water quality status in marine ecosystems

It is cost-effective protocol to identify a functional species pool for marine bioassessment by removing redundant species from a raw dataset. The feasibility of functional species pool for discriminating water quality status was studied based on a dataset of 120 samples of ciliated protozoa. From the full 60-species dataset of the whole ciliate communities, a 35-species subset was identified as a functional species pool, the species number, abundance and biodiversity indices of which were significantly correlated with those of the full species dataset. The spatial pattern of the subset was significantly related to the changes in nutrients soluble reactive phosphates (SRP), nitrate/nitrite nitrogen (NO₃-N/NO₂-N) and ammonium nitrogen (NH₄-N). Four indices of the taxonomic diversity (Δ), taxonomic distinctness (Δ*), average in taxonomic distinctness (Δ⁺) and the variation in taxonomic distinctness (Λ⁺) based on this small species pool were significantly correlated with the changes of nutrients NO₃-N and/or (NH₄-N). The paired indices Δ⁺ and Λ⁺ showed a clear decreasing trend of departure from the expected taxonomic pattern. These findings suggest that the 35-species functional species subset may be used as a feasible functional surrogate of ciliated protozoan assemblages for community-based bioassessment in marine ecosystems.     

钦州湾春、夏季浮游植物群落特征及其与环境因子的关系

为了探究人类活动对钦州湾浮游植物群落的影响,分别于2013年3月和7月进行了两航次综合调查。采用聚类和典型对应分析法,分别对浮游植物群落及其与环境因子的关系进行了研究。结果表明春夏两季浮游植物共有3门45属115种,其中硅藻100种、甲藻14种、蓝藻1种。两季浮游植物生态类群分别以暖温带广布种和暖温带近岸种为主,季节性差异明显。典型对应分析表明,影响浮游植物分布的主要环境因子是悬浮物、pH、盐度和营养盐。受入海径流和外来水团等因子影响,钦州湾浮游植物群落在夏季更易聚为相似性群落,春季则呈斑块化分布。     

基于功能性状的中亚热带岩溶常绿落叶阔叶混交林物种多样性维持研究

理解植物功能性状和功能实体在森林群落的分布,有助于探讨物种丧失对森林生态系统功能、冗余和恢复力的影响。为了解脆弱的岩溶石山森林在应对生物多样性丧失的生态系统反馈,对桂林岩溶石山两块1hm²的常绿落叶阔叶混交林的木本植物数据进行了分析。包括基于功能性状计算功能多样性、构建功能实体计算功能冗余以及采用Pearson相关分析和Mantel检验评估物种多样性指标在生态系统的维持机制。结果显示:(1)青冈+大叶榉树群落的功能多样性指标均低于鱼骨木+青冈+圆叶乌桕群落,且两个群落间功能均匀度不相关(P ＞ 0.05),功能丰富度、功能离散度和Rao''s二次熵呈现极显著相关性(P ＜ 0.001),功能分散度呈现显著相关性(P ＜ 0.05)。(2)两个群落的物种丰富度与功能冗余指标表现出相似的线性关系,即物种丰富度与功能实体等级、功能冗余、功能超冗余呈正相关,与功能脆弱性呈负相关关系。(3)不同植物功能性状间、不同功能多样性指标间和不同功能冗余指标间的相关性较强,功能多样性指标和功能冗余指标间无显著相关性,但功能性状与功能多样性指标、功能性状与功能冗余指标均存在不同程度的相关性。而在功能实体与物种多样性指标的相关性方面,呈现出同物种丰富度与物种多样性指标相似的显著度。另外,物种多度与物种丰富度、功能分散度、功能离散度、Rao''s二次熵及功能脆弱性均显著相关。总之,在岩溶石山常绿落叶阔叶混交林中,高功能多样性的群落存在高功能冗余的现象,但功能多样性和功能冗余是相互独立的因素;物种丰富度高的群落所提供的保险效应无法抵消其生态系统的脆弱性。因此,不能仅通过保护物种丰富度来维持生态系统的特有功能,还应充分考虑多度对生态系统功能的贡献,以更有效地实现对岩溶石山森林生态系统的保护。     

Low functional redundancy in coastal marine assemblages

The relationship between species and functional diversity remains poorly understood for nearly all ecosystem types, yet determining this relationship is critically important for developing both a mechanistic understanding of community assembly and appropriate expectations and approaches to protecting and restoring biological communities. Here we use two distinct data sets, one from kelp forests in the Channel Islands, California, and one from a global synthesis of marine reserves, to directly test how variation in species diversity translates into changes in functional diversity. We find strong positive relationships between species and functional diversity, and increased functional diversity of fish assemblages coinciding with recovery of species diversity in marine reserves, independent of the method used for classifying species in functional groups. These results indicate that low levels of redundancy in functional species traits exist across a suite of marine systems, and that fishing tends to remove whole functional groups from coastal marine ecosystems.     

Insights into discriminating water quality status using new biodiversity measures based on a trait hierarchy of body-size units

Biofilm-dwelling protozoa have successfully used as a feasible bioindicator for bioassessment of water quality status in marine ecosystems. Based on a dataset of biofilm-dwelling protozoa in coastal waters of the Yellow Sea, we demonstrated a spatial variation in body-size spectrum of protozoan communities along a gradient of increasing environmental pollution. Two biodiversity indices, as a new indicator of water quality, were proposed, first being body-size diversity (Δ′) logistically corresponded to taxonomic diversity index but with a trait hierarchy of body-size units based on Euclidean distance resemblance, and the second a modified body-size diversity index (Δ′_m) with a modified hierarchy based on the trait matrix. The values of both indices Δ′ and Δ′_m were found to be significantly correlated with the changes of environmental variables, especially the nutrients. Furthermore, the body-size diversity (Δ′_mrk) at body-size-rank-1 (“genus-level”) resolution might be used as a potential surrogate of those at “species-level” resolution. Thus, we suggest that the ecological parameters based on body-size spectrum may be used as potential bioindicator of water quality status, and that the body-size rank sufficiency might be an effective time-efficient protocol for monitoring programs by identifying taxa to “genus-level” body-size rank.     

An approach to analysis of colonization dynamics in community functioning of protozoa for bioassessment of marine pollution

Biological trait analysis is a powerful tool to summarize the spatial/temporal patterns of community functioning and ecosystem process at taxon-free resolutions. To identify the optimal colonization period with high homogeneity in functional patterns of protozoa for bioassessment, 1-month baseline colonization survey was conducted in coastal waters of the Yellow Sea. A fuzzy-coding functional trait system was used to summarize the functional structure of protozoan communities during the colonization process. The functional patterns showed a low homogeneity during the early stage (3–7 days), followed by a stable stage (10–14 days) with high homogeneity, and the last stage (21–28 days) with high heterogeneity. The functional richness showed a low variability, while the functional evenness and divergence generally showed a decreasing trend during the whole colonization process. Furthermore, the functional dispersion and RaoQ indices generally leveled off only during the stable stage. These results suggest that it is necessary to determine the optimal exposure time period with high homogeneity of community functioning for bioassessment using protozoan colonization in marine ecosystems.     

Night-time lighting alters the composition of marine epifaunal communities

Marine benthic communities face multiple anthropogenic pressures that compromise the future of some of the most biodiverse and functionally important ecosystems in the world. Yet one of the pressures these ecosystems face, night-time lighting, remains unstudied. Light is an important cue in guiding the settlement of invertebrate larvae, and altering natural regimes of nocturnal illumination could modify patterns of recruitment among sessile epifauna. We present the first evidence of night-time lighting changing the composition of temperate epifaunal marine invertebrate communities. Illuminating settlement surfaces with white light-emitting diode lighting at night, to levels experienced by these communities locally, both inhibited and encouraged the colonization of 39% of the taxa analysed, including three sessile and two mobile species. Our results indicate that ecological light pollution from coastal development, shipping and offshore infrastructure could be changing the composition of marine epifaunal communities.     

大理河沉积物微生物碳源利用特征及其影响因素

沉积物是河流生态系统中氮磷等物质循环的重要场所,而微生物是河流生态系统的重要组成部分,探究沉积物中微生物群落碳源利用特征和功能多样性对于河流生态环境保护具有重要意义。利用Biolog Eco微平板法、基于主成分分析、冗余分析阐明了大理河流域沉积物中微生物群落碳源利用强度和功能多样性变化特征及其影响因素。结果表明：（1）从流域上游到流域下游,沉积物中微生物碳源利用强度逐渐降低,与上游相比,支流、中游、下游沉积物中微生物碳源利用强度分别降低了13.4%、30.5%、30.7%。（2）沉积物中微生物群落功能多样性存在差异,沉积物中微生物群落功能多样性（Shannon-Wiener多样性指数）表现为上游 > 支流 > 中游 > 下游,常见物种优势度（Simpson多样性指数）则表现为下游 > 支流 > 中游 > 上游。（3）与微生物代谢活动相关性较高碳源为糖类,其次是氨基酸类,聚合物类、羧酸类、胺类、酚酸类与微生物代谢活动相关性较低。（4）沉积物中全氮、氨氮、硝氮、有机碳含量是影响微生物群落功能多样性和碳源利用特征差异的主要因素。流域沉积物中合适的碳、氮水平对维持河流水生态健康具有重要的意义。     

Land-use intensification reduces functional redundancy and response diversity in plant communities

Ecosystem resilience depends on functional redundancy (the number of species contributing similarly to an ecosystem function) and response diversity (how functionally similar species respond differently to disturbance). Here, we explore how land-use change impacts these attributes in plant communities, using data from 18 land-use intensity gradients that represent five biomes and > 2800 species. We identify functional groups using multivariate analysis of plant traits which influence ecosystem processes. Functional redundancy is calculated as the species richness within each group, and response diversity as the multivariate within-group dispersion in response trait space, using traits that influence responses to disturbances. Meta-analysis across all datasets showed that land-use intensification significantly reduced both functional redundancy and response diversity, although specific relationships varied considerably among the different land-use gradients. These results indicate that intensified management of ecosystems for resource extraction can increase their vulnerability to future disturbances.
Ecology Letters (2010) 13: 76–86     

Spatial variation in taxonomic distinctness of ciliated protozoan communities at genus-level resolution and relationships to marine water quality in Jiaozhou Bay,northern China

Taxonomic distinctness of ciliated protozoan communities at genus-level resolution was studied over a 12-month period (June 2007–May 2008) in Jiaozhou Bay, northern China. Samples were collected biweekly from three different depths at each of five sites. A range of physico-chemical parameters were also measured in order to determine water quality. Multivariate and univariate analyses showed that (1) spatial patterns of ciliated protozoan communities were significantly different among the five sampling sites (P < 0.05); (2) there were no significant differences among the three depths at each site (P > 0.05); (3) the taxonomic patterns of ciliate communities at genus-level resolution were significantly correlated with the spatial variation of environmental variables, in particular nitrate nitrogen (NO₃-N), sum of NO₃-N and nitrite nitrogen (NO _n -N), and soluble reactive phosphate (SRP); (4) the Margalef’s index did not show a significant correlation with chemical parameters although it was higher for the less eutrophic than the more eutrophic sites (P > 0.05); (5) the average taxonomic distinctness (Δ⁺) and variation in taxonomic distinctness (Λ⁺) of the ciliate communities at genus-level resolution were significantly negatively correlated with the combination of NO _n -N and SRP; (6) the paired taxonomic biodiversity indices (Δ⁺ and Λ⁺) showed a clear decreasing trend of departure from the expected taxonomic breadth in response to water quality. These results suggest that spatial patterns and taxonomic distinctness (especially the paired Δ⁺ and Λ⁺) of ciliated protozoan communities at genus-level resolution can be used as potential indicators for assessing marine water quality while minimizing costs in terms of the time and resources needed for sample analysis.     

Can season interfere with diatom ecological quality assessment?

To understand whether seasons influence the ecological quality assessment of streams on the basis of diatoms, a study was undertaken in two lowland water courses located in northwest Portugal, between autumn 2008 and summer 2009. Temporal variation in the chemical pollution of these streams was small as revealed by a number of physical and chemical parameters analyzed. PERMANOVA global test revealed significant variation in water temperature among seasons. The diatom communities also showed a temporal variation although not all the seasons were statistically different. The multidimensional scaling analysis showed that the main differences in the diatom communities were between two groups of seasons: autumn/winter and spring/summer. Species such as Cocconeis pseudolineata, Gomphonema parvulum var. exilissimum, Fragilaria vaucheriae, Encyonema minutum, and Nitzschia recta were more abundant in spring/summer, while species such as Mayamaea atomus and Nitzschia pusilla were more abundant in autumn/winter. The BIOENV routine confirmed that the biological and temperature patterns are highly correlated. Despite the effects observed on diatom communities, these differences were buffered by the EQR (IPS) values which do not reflect seasonal differences. Therefore, the use of the index IPS seems to allow the monitoring of the streams’ ecological quality throughout the year without the interference of the natural temporal variability of diatom communities.