The Cladocera of Sri Lanka (Ceylon), with remarks on some species

The freshwater Cladocera of Sri Lanka has been revised based on the study of over 700 zooplankton samples collected from all habitat types during 1965–1980. The cladoceran fauna is represented by six families; members of the families Polyphemidae, Leptodoridae and Holopedidae are absent. The common temperate genus Daphnia is rare.Sixty-two species have been recorded from Sri Lanka. Of these, five are new records. Remarks on a few species are given with illustrations. The distribution of Cladocera in different types of habitats is discussed. The greatest species diversity was found in ponds. The Sri Lankan fauna is numerically and in species diversity typical of tropical cladoceran fauna. It resembles the southern Indian fauna very closely except for the absence in Sri Lanka of the genera Acroperus and Camptocercus.     

The Freshwater Zooplankton of Sri Lanka,with a Discussion of Tropical Freshwater Zooplankton Composition

Based on the study of over 500 zooplankton samples collected in Sri Lanka (Ceylon) during 1965–1974, the species composition from different habitats is analysed. The zooplankton assemblage is typically tropical with relatively few species of Cladocera and Copepoda. The Rotifera include a large number of species of the genus Brachionus. The limnetic zooplankton resembles the pond zooplankton closely in that all the eurytopic species found in the different types of habitats, including ponds, also occur in the limnetic zooplankton. The large Cladocera belonging to the genus Daphnia are very rare. In general, large zooplankters are absent. The size composition of the zooplankton has a smaller range than in temperate regions. This is due to the absence of large-sized zooplankton species. The reasons for the differences in species variety and size composition between zooplankton of temperate and tropical regions is perhaps due to a number of factors. These include the effects of high and uniform temperatures, food availability and predation by fish and invertebrates.     

A thioredoxin response to the WSSV challenge on the Chinese white shrimp, Fenneropenaeus chinensis

Thioredoxin (TRX) is involved in cell redox homeostasis. In addition, it is responsible for maintaining proteins in their reduced state. In our study, a Fenneropenaeus chinensis thioredoxin (FcTRX) gene was identified from the Chinese white shrimp. The full length of FcTRX was 777 bp, including a 60 bp 5′ untranslated region (UTR), a 318 bp open reading frame (ORF) encoding a 105 amino acids protein, and a 399 bp 3′ UTR. FcTRX contained a TRX domain with a conserved motif of Cys-Gly-Pro-Cys (CGPC). No signal peptide was predicted by SMART analysis. The molecular mass and pI of FcTRX were 12 kDa and 4.62, respectively. FcTRX is a widely distributed gene, and its mRNA is detected in hemocytes, hearts, hepatopancreas, gills, stomach, and intestine from an unchallenged shrimp. The expression level of FcTRX was the highest in hepatopancreas, where it was down-regulated to the lowest level at 12 h white spot syndrome virus (WSSV) challenge. In the gills, it went up to the highest level at 6 h. Western blot showed that FcTRX protein in hepatopancreas challenged with WSSV was down-regulated from 2 h to 12 h and then restored to the level similar to that of unchallenged shrimp at 24 h. In the gills challenged with WSSV, the FcTRX protein was up-regulated from 6 h to 24 h. Our research indicated its possible role in the anti-WSSV innate immunity of shrimps.     

Molecular characterisation and disease severity of leptospirosis in Sri Lanka

Leptospirosis is a re-emerging zoonotic disease all over the world, important intropical and subtropical areas. A majority of leptospirosis infected patients presentas subclinical or mild disease while 5-10% may develop severe infection requiringhospitalisation and critical care. It is possible that several factors, such as theinfecting serovar, level of leptospiraemia, host genetic factors and host immuneresponse, may be important in predisposition towards severe disease. DifferentLeptospira strains circulate in different geographical regionscontributing to variable disease severity. Therefore, it is important to investigatethe circulating strains at geographical locations during each outbreak forepidemiological studies and to support the clinical management of the patients. Inthis study immunochromatography, microscopic agglutination test and polymerase chainreaction were used to diagnose leptospirosis. Further restriction fragment lengthpolymorphism and DNA sequencing methods were used to identify the circulating strainsin two selected geographical regions of Sri Lanka. Leptospira interrogans,Leptospira borgpetersenii and Leptospira kirschneristrains were identified to be circulating in western and southern provinces.L. interrogans was the predominant species circulating in westernand southern provinces in 2013 and its presence was mainly associated with renalfailure.     

Threats to the indigenous freshwater fishes of Sri Lanka and remarks on their conservation

Sixty-two freshwater dispersant (26 endemic), 26 saltwater dispersant and 20 exotic fishes have been recorded from Sri Lanka's inland waters. The discovery of nine new species of freshwater fish during the past decade suggests that Sri Lanka's fish fauna is not yet well known and that further discoveries can be expected. All the new species, and almost all the endemic ones, have been recorded from forested areas in the foothills of the southwestern wet zone and the Knuckles hills. The known ranges of many species are exceedingly small; almost all of them are habitat specialists. 25 species have at least two strong habitat preferences (in almost all case, shade being one), though a majority (32 species) have none. Habitat alteration is therefore the greatest threat to their survival.Eight freshwater fish species are considered endangered and a further five, vulnerable. Three species are rare, 18 common and 13 abundant. All but two of the endangered species and all the vulnerable species are endemic in Sri Lanka. Nine species are each restricted to only one drainage basin, and seven have a known range < 50 km². Three species of diadromous gobies known only from small populations are considered vulnerable.Examination of the existing threats suggest that deforestation, the widespread dispersion of exotics, pollution caused by agricultural chemicals and increasing pressure from the food fishery present the greatest threats to fish populations. While the endemic fishes are restricted to or most abundant in the wet zone, the overwhelming extent (> 95%) of Sri Lanka's nature reserve areas are in the dry zone. A programme to maintain self-sustaining captive populations of the endangered species is urgently necessary.     

Phylogenetic affinities of Phobetinus to other pirate spider genera (Araneae: Mimetidae) as indicated by spinning field morphology

Spinnerets from Phobetinus sagittifer and an undescribed Phobetinus species were examined by scanning electron microscopy to gain a better understanding of this genus' relationships to other genera in the family Mimetidae. Consistent with placement of Phobetinus in Mimetinae, females possessed two synapomorphies of this subfamily; enlarged cylindrical silk gland spigots with domed shafts and a single cylindrical spigot per posterior lateral spinneret (PLS). Spinning field features overall suggest Phobetinus is most closely related to Mimetus, followed by Australomimetus, then Ero. A possible synapomorphy of a clade including Mimetus and Phobetinus is a pair of modified piriform silk gland spigots on each anterior lateral spinneret of adult males located adjacent to the secondary major ampullate silk gland tartipore. These spigots were present in P. sagittifer; however, similarly positioned spigots in the undescribed species were not obviously modified (i.e., wider or with larger openings relative to the other piriform spigots). Close affinity to Mimetus was also indicated by tartipore-accommodated PLS aciniform silk glands in both Phobetinus species. These have been consistently observed in Mimetus, but not in Australomimetus or Ero. Somatic and genitalic drawings of P. sagittifer are provided to aid identification and similarities are noted between male pedipalps of Mimetus and Phobetinus.     

Mitochondrial DNA-based analysis of genetic variation and relatedness among Sri Lankan indigenous chickens and the Ceylon junglefowl (Gallus lafayetti)

Indigenous chickens (IC) in developing countries provide a useful resource to detect novel genes in mitochondrial and nuclear genomes. Here, we investigated the level of genetic diversity in IC from five distinct regions of Sri Lanka using a PCR-based resequencing method. In addition, we investigated the relatedness of IC to different species of junglefowls including Ceylon (CJF; Gallus lafayetti ), a subspecies that is endemic to Sri Lanka, green ( Gallus varius ), grey ( Gallus sonneratii ) and red ( Gallus gallus ) junglefowls. A total of 140 birds including eight CJF were used to screen the control region of the mitochondrial DNA sequence for single nucleotide polymorphisms (SNPs) and other variants. We detected and validated 44 SNPs, which formed 42 haplotypes and six haplogroups in IC. The SNPs observed in the CJF were distinct and the D-loop appeared to be missing a 62-bp segment found in IC and the red junglefowl. Among the six haplogroups of IC, only one was region-specific. Estimates of haplotype and nucleotide diversities ranged from 0.901 to 0.965 and from 0.011 to 0.013 respectively, and genetic divergence was generally low. Further, variation among individuals within regions accounted for 92% of the total molecular variation among birds. The Sri Lankan IC were more closely related to red and grey junglefowls than to CJF, indicating multiple origins. The molecular information on genetic diversity revealed in our study may be useful in developing genetic improvement and conservation strategies to better utilize indigenous Sri Lankan chicken resources.     

The seasonality of monsoonal primary productivity in Sri Lanka

The relationship between phytoplankton primary production and seasonality of physico-chemical parameters were examined for five man-made lakes in the dry-zone of Sri Lanka. Sri Lanka experiences two monsoons dividing the year into four meteorological seasons: — the North East (October–December) and South West (April–June) monsoons and the two inter-monsoons. A significant log linear relationship was found between Secchi disc depth and the depth of the euphotic zone which was lowest during the NE monsoon. Maximum mean photosynthetic rate ranged from 0.935 ± 0.067 SE to 0.479 mg O₂l^–1 h^–1 ± 0.115. Gross primary productivity which ranged from 0.378 g O₂ m^–2 h^–1 in the NE monsoon to 0.980 g O₂ m^–2 h^–1 in the SW monsoon showed significant season variation. This is shown to be determined either directly or indirectly by the light regime.     

Receptor for Activated C Kinase-1 protein from Penaeus monodon (Pm-RACK1) participates in the shrimp antioxidant response

Cellular oxidative stress responses are caused in many ways, but especially by disease and environmental stress. After the initial burst of reactive oxygen species (ROS), the effective elimination of ROS is crucial for the survival of organisms and is mediated by antioxidant defense mechanisms. In this paper, we investigate the possible antioxidant function of Penaeus monodon Receptor for Activated C Kinase-1 (Pm-RACK1). When Pm-RACK1 was over-expressed in Escherichia coli cells or Spodoptera frugiperda (Sf9) insect cells exposed to H₂O₂, it significantly protected the cells from oxidative damage induced by H₂O₂. When recombinant Pm-RACK1 protein was expressed as a histidine fusion protein in E. coli and purified with a Ni²⁺-column it possessed antioxidant functions that protected DNA from metal-catalyzed oxidation. Shrimp (Penaeus vannamei) held at an alkaline pH had a much higher hepatopancreatic expression of Pm-RACK1 than in those held at pH 7.4. The exposure of shrimp to alkaline pH is also known to increase ROS production. These results provide strong evidence that Pm-RACK1 can participate in the shrimp antioxidant response induced by the formation of ROS.     

Helicobacter pylori in School Children From the Western Province of Sri Lanka

Background. Little is known about the prevalence of Helicobacter pylori in Sri Lanka and nothing is known about its prevalence in children. Therefore the prevalence of H. pylori in a group of school children in Sri Lanka was determined. Materials and Methods. The presence of H. pylori colonisation was determined by detection of faecal antigen and salivary antibody (IgG) by enzyme immuno assay, in 184 children aged between 5 and 19 years, in the Western Province‐Colombo district of Sri Lanka. Results. Overall, only 12/184 (6.5%) had detectable H. pylori antigen in their stools and were considered infected with H. pylori, while 51/184 (27.7%) had H. pylori IgG in saliva. H. pylori salivary IgG declined with age while H. pylori antigen detection increased with age. H. pylori infection, as determined by salivary antibody (66%), was greater in children living in overcrowded conditions, although this was not statistically significant. Conclusion. The prevalence of H. pylori among school children in Sri Lanka was 6.5% by detection of faecal antigen and 27.7% by detection of salivary antibody, respectively. Initial infection with H. pylori appeared to occur in early childhood whilst active disease began in late childhood. Overcrowding appears to facilitate the transmission of the organism. Overall the prevalence of H. pylori was low in Sri Lanka compared with other countries in South‐east Asia.     

Chromoblastomycosis – A clinical and mycological study of 71 cases from Sri Lanka

Chromoblastomycosis, a well-documented chronic fungal infection, represents a specific clinical entity with typical warty cutaneous nodules and a worldwide distribution. Although more prevalent in tropical and subtropical regions, only a few reports are available from Sri Lanka or from Asia. Five etiologic agents of chromoblastomycosis have been recognized worldwide. Of these the majority of infections have been caused by Fonsecaea pedrosoi. During the period from 1952 to 1962, only twelve culturally proven cases of this disease had been recorded from Sri Lanka. The fungus responsible was F. pedrosoi. The present report presents a study of the clinical and mycological features of 71 Sri Lankan patients with chromoblastomycosis for the 16-year period from 1978 to 1993. It documents three etiological agents. Culture identification was made in 69 cases. The three fungal species were Fonsecaea pedrosoi (64), Phialophora verrucosa (3) and a fungus compatible morphologically with F. compacta (2). The isolation of a fungus morphologically compatible with F. compacta is of significance since only 12 cases have been documented in the world's literature so far. This revised version was published online in June 2006 with corrections to the Cover Date.     

Vegetation survey of the Wasgomuwa National Park: reconnaissance

Wasgomuwa National Park is situated south of Polonnaruwa and north of Mahiyangana in Sri Lanka and is bordered by two rivers Mahaweli Ganga and Amban Ganga. Bioclimatically most of the park lies in the dry zone of the country but the south west embraces the intermediate zone. The vegetation is broadly a dry monsoonal forest but forms an interesting mosaic of vegetation types from Semi evergreen forest to abandoned paddy fields, on a finer scale.The vegetation of the park was studied in detail on ground and also using aerial photographs. It was possible to classify the vegetation into many distinct types or phytosociological units, based on their cover, site characteristics, physiognomy and species composition.     

Anthropophagy and aggregation behaviour of the sandfly Phlebotomus argentipes in Sri Lanka

ABSTRACT. The visceral leishmaniasis (VL) vector Phlebotomus argentipes Annandale & Brunetti is widely distributed throughout the Indian sub-continent and S.E. Asia. The absence of VL in areas such as Sri Lanka has been attributed to the zoophilic nature of P.argentipes , since they were not recorded biting man.
Field studies on P. argentipes were undertaken in the central highlands of Sri Lanka, near Kandy, in May 1988. Male sandflies outnumbered females on cows by 19:1, and were regularly spaced at all densities. This behaviour is considered analagous to swarming in other Nematocera. However, all-night human-biting catches show the biting rate to be similar (mean=8.4, range 2–25 bites per night over ten consecutive nights) to that in N.E. India where VL is endemic. This anthropophagy was maintained during laboratory colonization.