Recovery of a Temperate Reef Assemblage in a Marine Protected Area following the Exclusion of Towed Demersal Fishing

Marine Protected Areas MPA have been widely used over the last 2 decades to address human impacts on marine habitats within an ecosystem management context. Few studies have quantified recovery of temperate rocky reef communities following the cessation of scallop dredging or demersal trawling. This is critical information for the future management of these habitats to contribute towards conservation and fisheries targets.The Lyme Bay MPA, in south west UK, has excluded towed demersal fishing gear from 206 km² of sensitive reef habitat using a Statutory Instrument since July 2008.To assess benthic recovery in this MPA we used a flying video array to survey macro epi-benthos annually from 2008 to 2011. 4 treatments (the New Closure, previously voluntarily Closed Controls and Near or Far Open to fishing Controls) were sampled to test a recovery hypothesis that was defined as ‘the New Closure becoming more similar to the Closed Controls and less similar to the Open Controls’.Following the cessation of towed demersal fishing, within three years positive responses were observed for species richness, total abundance, assemblage composition and seven of 13 indicator taxa. Definitive evidence of recovery was noted for species richness and three of the indicator taxa (Pentapora fascialis, Phallusia mammillata and Pecten maximus).While it is hoped that MPAs, which exclude anthropogenic disturbance, will allow functional restoration of goods and services provided by benthic communities, it is an unknown for temperate reef systems. Establishing the likely timescales for restoration is key to future marine management. We demonstrate the early stages of successful recruitment and link these to the potential wider ecosystem benefits including those to commercial fisheries.     

Relationships among Egg Size, Composition, and Energy: A Comparative Study of Geminate Sea Urchins

Egg size is one of the fundamental parameters in the life histories of marine organisms. However, few studies have examined the relationships among egg size, composition, and energetic content in a phylogenetically controlled context. We investigated the associations among egg size, composition, and energy using a comparative system, geminate species formed by the closure of the Central American Seaway. We examined western Atlantic (WA) and eastern Pacific (EP) species in three echinoid genera, Echinometra, Eucidaris, and Diadema. In the genus with the largest difference in egg size between geminates (Echinometra), the eggs of WA species were larger, lipid rich and protein poor compared to the smaller eggs of their EP geminate. In addition, the larger WA eggs had significantly greater total egg energy and summed biochemical constituents yet significantly lower egg energy density (energy-per-unit-volume). However, the genera with smaller (Eucidaris) or no (Diadema) differences in egg size were not significantly different in summed biochemical constituents, total egg energy, or energy density. Theoretical models generally assume a strong tradeoff between egg size and fecundity that limits energetic investment and constrains life history evolution. We show that even among closely-related taxa, large eggs cannot be assumed to be scaled-up small eggs either in terms of energy or composition. Although our data comes exclusively from echinoid echinoderms, this pattern may be generalizable to other marine invertebrate taxa. Because egg composition and egg size do not necessarily evolve in lockstep, selective factors such as sperm limitation could act on egg volume without necessarily affecting maternal or larval energetics.     

Ecological and evolutionary significance of resting eggs in marine copepods: past, present, and future studies

The occurrence of a resting egg phase in the life cycle of marine and freshwater planktonic copepods is well documented and receiving increasing attention by investigators. The species generally occur in coastal marine waters, freshwater ponds and lakes in areas that undergo strong seasonal fluctuations, though examples have been reported for tropical and sub-tropical areas not subject to such extreme fluctuations. Typically such species disappear from the water column for portions of the year, but remain in the region as benthic resting eggs. Studies to date have focused on the conditions that promote the occurrence of resting eggs, the factors that affect their survival and hatching from sediments, the existence of egg banks in sediments, and the impact of resting eggs on plankton community structure. Benthic resting eggs of copepods include diapause eggs as well as subitaneous (non-diapause) eggs that are quiescent due to conditions in the sediments. As with other groups of organisms the resting egg phase is viewed as being critical for the perpetuation of species year after year, especially those that disappear from the water column for portions of the year. Some data indicate that eggs can survive for many years in sediments which would expand their influence to evolutionary time scales. This paper summarizes our understanding of embryonic dormancy in marine copepods.     

Diatoms from surface sediments of the northern part of Lake Tanganyika

227 Diatom taxa were observed in the surface sediments of the northern part of Lake Tanganyika, including 1 new to science: Amphora tanganyikae. The diatom community of these sediments is mainly composed of benthic organisms while planktonic diatoms are rather rare. Many brackish-water and a few marine organisms were observed. Cosmopolitan organisms (77.1%) dominate the diatom flora but tropical, tropical African and African taxa are also well represented (22.9%)Deceased.Deceased.     

From fronds to fish: the use of indicators for ecological monitoring in marine benthic ecosystems,with case studies from temperate Western Australia

Ecological indicators are used for monitoring in marine habitats the world over. With the advent of Ecosystem Based Fisheries Management (EBFM), the need for cost effective indicators of environmental impacts and ecosystem condition has intensified. Here, we review the development, utilisation and analysis of indicators for monitoring in marine benthic habitats, and outline important advances made in recent years. We use the unique, speciose benthic system of Western Australia (WA) as a detailed case study, as the development of indicators for EBFM in this region is presently ongoing, and major environmental drivers (e.g. climate change) and fishing practices are currently influencing WA marine systems. As such, the work is biased towards, but not restricted to, indicators that may be important tools for EBFM, such as biodiversity surrogates and indicators of fishing pressure. The review aimed to: (1) provide a concise, up-to-date account of the use of ecological indicators in marine systems; (2) discuss the current, and potential, applications of indicators for ecological monitoring in WA; and (3) highlight priority areas for research and pressing knowledge gaps. We examined indicators derived from benthic primary producers, benthic invertebrates and fish to achieve these goals.     

Patterns of benthic mega-invertebrate habitat associations in the Pacific Northwest continental shelf waters

As human impacts and demands for ocean space increase (fisheries, aquaculture, marine reserves, renewable energy), identification of marine habitats hosting sensitive biological assemblages has become a priority. Epifaunal invertebrates, especially the structure-forming species, are an increasing conservation concern as many traditional (bottom-contact fishing) and novel (marine renewable energy) ocean uses have the potential to displace or otherwise impact these slow-growing organisms. The differences in mega-invertebrate species assemblages between high-relief rocks and low-relief sediments are well documented and likely hold for most marine environments. In anticipation of potential development of marine renewable energy faculties off Oregon and Washington (USA), a survey of the benthic invertebrate assemblages and habitats was conducted on the continental shelf of the Pacific Northwest, using video footage collected by ROV, to more finely characterize these assemblage–habitat associations. Four main associations were found: pure mud/sand dominated by sea whips and burrowing brittle stars; mixed mud–rock (which may be further divided based on size of mixed-in rocks) characterized by various taxa at small densities; consolidated rocks characterized by high diversity and density of sessile or motile mega-invertebrates; and rubble rocks showing less diversity and density than the consolidated rocks, possibly due to the disturbance generated by movement of the unconsolidated rocks. The results of this study will help classify and map the seafloor in a way that represents benthic habitats reflective of biological species assemblage distributions, rather than solely geological features, and support conservation and management planning.     

Deconstructing latitudinal species richness patterns in the ocean: does larval development hold the clue?

The consistent decrease in species richness with latitude shows several exceptions among marine organisms. We hypothesize that contrasting latitudinal diversity gradients can be explained by differences in critical life-history attributes, such as mode of larval development (MLD). We deconstructed latitudinal species richness patterns of marine benthic invertebrates according to MLD to elucidate differences in patterns of species richness and to reveal underlying processes. The patterns of species richness were remarkably similar across taxa within MLD but differed between MLD. Species richness decreased polewards in planktotrophic species and increased in direct developers. Temperature explained most of the variation in species richness. Low temperature at high latitudes may generally favour direct developing species, but, together with low chlorophyll- a concentration, limit the distribution of planktotrophic species. The contrasting influence of temperature on different MLDs might be explained by its effect on the length of planktonic life and on brooding costs.     

Distribution of thermophilic endospores in a temperate estuary indicate that dispersal history structures sediment microbial communities

Endospores of thermophilic bacteria are found in cold and temperate sediments where they persist in a dormant state. As inactive endospores that cannot grow at the low ambient temperatures, they are akin to tracer particles in cold sediments, unaffected by factors normally governing microbial biogeography (e.g., selection, drift, mutation). This makes thermophilic endospores ideal model organisms for studying microbial biogeography since their spatial distribution can be directly related to their dispersal history. To assess dispersal histories of estuarine bacteria, thermophilic endospores were enriched from sediments along a freshwater‐to‐marine transect of the River Tyne in high temperature incubations (50°C). Dispersal histories for 75 different taxa indicated that the majority of estuarine endospores were of terrestrial origin; most closely related to bacteria from warm habitats associated with industrial activity. A subset of the taxa detected were marine derived, with close relatives from hot deep marine biosphere habitats. These patterns are consistent with the sources of sediment in the River Tyne being predominantly terrestrial in origin. The results point to microbial communities in estuarine and marine sediments being structured by bi‐directional currents, terrestrial run‐off and industrial effluent as vectors of passive dispersal and immigration.     

Reproductive biology, family conflict, and size of offspring in marine invertebrates

All organisms face two fundamental trade-offs in the allocation of energetic resources: one between many small versus a few large offspring, and the second between present and future reproduction. Nowhere are these trade-offs more apparent than in the vast range of variation in the sizes of eggs and offspring exhibited among species of marine invertebrates. It has become increasingly clear that, in many taxa of marine organisms, there is also substantial intraspecific variation in the size of eggs and hatchings. This variation has largely been attributed to adaptive maternal effects. In theory, however, the inevitable conflicts of interest that arise in families of sexually reproducing organisms over the optimal distribution of parental resources among siblings could also account for much of this variation in egg and offspring size. Here, we explore the potential impacts of family conflict on offspring traits by comparing the life histories of two exemplar species of marine organisms, the polychaete Boccardia proboscidea and the gastropod Solenosteira macrospira, emphasizing how differences in modes of fertilization and parental care might influence the phenotype and, consequently, the fitness of offspring.     

Discovery of agglutinated benthic foraminifera in Devonian black shales and their relevance for the redox state of ancient seas

Agglutinated foraminifera are benthic organisms that occur in marginal marine to bathyal environments. Though some taxa can live in oxygen deficient environments, they require at least some oxygen in order to persist at the seafloor. The discovery that they occur widely in Late Devonian black shales has a bearing on the boundary conditions required for episodes of extensive carbon sequestration in marine sediments and their connection to atmospheric composition and global climate. Devonian black shales of the eastern US have been studied extensively to determine the fundamental controls on carbon burial, and a range of mechanisms has been proposed. Finding agglutinated benthic foraminifera in these black shales refocuses the debate about their origin and points to limitations of earlier models.     

Elevated cadmium accumulation in marine organisms from Terra Nova Bay (Antarctica)

 As a contribution towards identification of the principal environmental factors involved in cadmium accumulation in Antarctic marine organisms and the establishment of a baseline near the Italian Antarctic Station “Baia Terra Nova”, surface sediments, plankton and benthic organisms were studied in coastal waters of Terra Nova Bay (Ross Sea). The cadmium content of sediments was similar to that regarded as background in most marine coastal areas, whereas in surface water, phyto- and zooplankton it was similar to values measured in areas of enhanced upwelling. Algal and animal taxa dominating benthic associations had a higher cadmium content than related species from other seas. Very high concentrations of the metal were found in sponges (10–80 μg/g dw) and in the digestive gland of molluscs (up to 345 μg/g in Neobuccinum eatoni). The rapid regeneration of cadmium and its natural occurrence and bioavailability in highly productive coastal waters seem to be responsible for cadmium accumulation in the tissues of marine organisms near the “Baia Terra Nova” station. Received: 6 June 1995/Accepted: 23 November 1995     

Toxicity analysis of freshwater and marine sediments with meio- and macrobenthic organisms: a review

Benthic metazoans play a key role as test organisms in toxicity analyses of aquatic ecosystems. This report gives an overview of the species of benthic metazoans used for the assessment of toxicity in freshwater and marine sediments, as well as of the criteria relevant to the choice between test species and procedures. The main applications of these organisms are mono-species bioassays, test-batteries, analyses of benthic communities and bioaccumulation studies. Sediment toxicity assays, including acute and chronic exposures, have been developed for nematodes, insects, oligochaetes, polychaetes, crustaceans, molluscs and echinoderms. At least 30 species of freshwater and 71 species of marine and estuarine benthic metazoans have thus far been used in sediment toxicity bioassays. Although aquatic pollution is a world-wide problem, most sediment toxicity bioassays have been developed for organisms native to Europe and North America. The most common bioassay endpoints are mortality, development, growth and behavioural responses. The value of genetic, biochemical, physiological and pathological responses as toxicity endpoints is currently being investigated. The quest for additional test species and protocols is still a worthwhile endeavour in sediment ecotoxicology.     

Establishing the South Australian Macrobenthic Traits (SAMT) database: A trait classification for functional assessments

Trait‐based approaches are increasingly used as a proxy for understanding the relationship between biodiversity and ecosystem functioning. Macrobenthic fauna are considered one of the major providers of ecosystem functions in marine soft sediments; however, several gaps persist in the knowledge of their trait classification, limiting the potential use of functional assessments. While trait databases are available for the well‐studied North Atlantic benthic fauna, no such trait classification system exists for Australia. Here, we present the South Australian Macrobenthic Traits (SAMT) database, the first comprehensive assessment of macrobenthic fauna traits in temperate Australian waters. The SAMT database includes 13 traits and 54 trait‐modalities (e.g., life history, morphology, physiology, and behavior), and is based on records of macrobenthic fauna from South Australia. We provide trait information for more than 250 macrobenthic taxa, including outcomes from a fuzzy coding procedure, as well as an R package for using and analyzing the SAMT database. The establishment of the SAMT constitutes the foundation for a comprehensive macrobenthic trait database for the wider southern Australian region that could facilitate future research on functional perspectives, such as assessments of functional diversity and changes to ecosystem functioning.     

Psychrophilic prokaryote structural-functional relationships, biogeography and evolution within marine sediment.

Prokaryote diversity has been found to be surprisingly high in cold marine sediments with numerous clades detected spread throughout many phyla. Marine benthic sediment clades are largely ecotypically distinct and autochthonous. Since almost all marine sediment prokaryotic taxa have yet to be cultivated, functionality is currently overwhelmingly cryptic for most benthic prokaryotic taxa except those falling into specific lineages for which there is cultivation or detailed biogeochemical data. Multivariate statistical comparisons of 16S rRNA gene sequence and denaturing gradient gel electrophoresis (DGGE) data show distinct distribution patterns of prokaryotic communities in sediment layers. By comparison geographical differences and differences related to the physical texture and organic content seem to result in generally smaller differences.     

Macroalgal blooms alter community structure and primary productivity in marine ecosystems

Eutrophication, coupled with loss of herbivory due to habitat degradation and overharvesting, has increased the frequency and severity of macroalgal blooms worldwide. Macroalgal blooms interfere with human activities in coastal areas, and sometimes necessitate costly algal removal programmes. They also have many detrimental effects on marine and estuarine ecosystems, including induction of hypoxia, release of toxic hydrogen sulphide into the sediments and atmosphere, and the loss of ecologically and economically important species. However, macroalgal blooms can also increase habitat complexity, provide organisms with food and shelter, and reduce other problems associated with eutrophication. These contrasting effects make their overall ecological impacts unclear. We conducted a systematic review and meta‐analysis to estimate the overall effects of macroalgal blooms on several key measures of ecosystem structure and functioning in marine ecosystems. We also evaluated some of the ecological and methodological factors that might explain the highly variable effects observed in different studies. Averaged across all studies, macroalgal blooms had negative effects on the abundance and species richness of marine organisms, but blooms by different algal taxa had different consequences, ranging from strong negative to strong positive effects. Blooms' effects on species richness also depended on the habitat where they occurred, with the strongest negative effects seen in sandy or muddy subtidal habitats and in the rocky intertidal. Invertebrate communities also appeared to be particularly sensitive to blooms, suffering reductions in their abundance, species richness, and diversity. The total net primary productivity, gross primary productivity, and respiration of benthic ecosystems were higher during macroalgal blooms, but blooms had negative effects on the productivity and respiration of other organisms. These results suggest that, in addition to their direct social and economic costs, macroalgal blooms have ecological effects that may alter their capacity to deliver important ecosystem services.     

Ecological effects of Irgarol 1051 and Diuron on a coastal meiobenthic community: A laboratory microcosm experiment

After the Tributyltin world ban, Irgarol 1051 and Diuron have been the most commonly used biocides in antifouling paints. When adsorbed to suspended particulate matter or introduced as paint particles, these compounds accumulate in marine sediments and potentially cause ecological damage to benthic organisms. Therefore, a microcosm experiment was designed to evaluate the effects of Irgarol 1051 and Diuron, individually, on a meiofaunal community with emphasis on the dominant nematode assemblages. The experiment tested two factors: “Treatment” (two types of controls and three environmentally relevant concentrations of each contaminant) and “Exposure time” (5, 15 and 30 days). Significant declines in meiofauna density, nematode species richness and diversity, and changes in multivariate community structure were observed for both biocides at all exposure levels when compared to controls. Decreases occurred early on, within five days of exposure, which suggests that mortality, and not sub-lethal effects, has befallen upon the organisms. Sediment chlorophyll a and pheopigment concentrations, and redox potential were monitored to verify any indirect effects to the fauna through changes in the environment and results gave no indications of such mediated effects pointing to a direct toxic effect of both Irgarol and Diuron on the meiofauna. Although contaminated treatments showed a significant decline in the relative abundances of a particular functional group represented by the larger, longer-lived species, we did not observe the typical expected switch to smaller, more opportunistic taxa. Indeed, differences between controls and contaminated treatments were mainly due to an overall reduction in densities of the most abundant species in contaminated treatments. The high mortality (ca. 50% decline in total abundances), changes in community structure and species loss observed at biocide levels frequently encountered in the field suggest Irgarol and Diuron as a threat to benthic communities. Such severe effects contrast to other studies that have detected lower impacts, suggesting the free-living nematodes as potential indicators of marine pollution and the microcosm approach using natural communities as an impending tool for ecotoxicological studies.     

Seagrasses,seaweeds and plant debris: An extraordinary reservoir of fungal diversity in the Mediterranean Sea

This review gathers data derived from many research efforts on marine fungi associated with plant-origin substrates in the Mediterranean Sea. Overall, the review draws up a list of 378 taxa associated with seagrasses, seaweeds and wood.For each of the three substrates, on average, 92.7% of the taxa belonged to the phylum Ascomycota. Basidiomycota were better represented in seagrasses (9.8%) than in seaweeds (4.9%) and wood (1.2%). Mucoromycota and Mortirellomycota were scarce, while Chytridiomycota was detected only in association with phanerogames (3.7%). Dothideomycetes and Sordariomycetes were the dominant classes, while the orders Pleosporales and Hypocreales were significantly represented in the three sububstrates (42, 37, 10 taxa-30, 40, 16 taxa). Seagrasses with 210 associated taxa were the substrates with the richest fungal communities, immediately followed by seaweeds (180 taxa) and finally by wood (78 taxa). Out of the total, only 12 taxa were shared by the three varieties of substrates, including species that were widespread in marine environments. However, many algal species and seagrasses inhabiting the Mediterranean Sea remain unexplored. This gap indicates the need to apply more extensive surveys to explain the huge fungal biodiversity herein hosted, and increase the chances of describing novel fungal lineages.     

The biodiversity of macrofaunal organisms in marine sediments

Marine sediments cover most of the ocean bottom, and the organisms that reside in these sediments therefore constitute the largest faunal assemblage on Earth in areal coverage. The biomass in these sediments is dominated by macrofauna, a grouping of invertebrate polychaetes, molluscs, crustaceans and other phyla based on size. Globally, only a small portion of marine habitats have been sampled for macrofauna, but sampled areas have led to global estimates of macrofaunal species number ranging from 500,000 to 10,000,000. Most of these species are undescribed, and global syntheses of patterns of individual taxa and biodiversity are few and based on limited samples. The significance of biodiversity in marine sediments to ecosystem processes is poorly understood, but individual species and functional groups are known to carry out activities that have global importance. Macrofaunal activity impacts global carbon, nitrogen and sulphur cycling, transport, burial and metabolism of pollutants, secondary production including commercial species, and transport of sediments. Documented extinctions of marine macrofauna are few, but the ramifications of species loss through habitat shrinkage and undocumented extinctions are unknown. Limited data suggest there is substantial functional redundancy in macrofauna within trophic groups but whether this redundancy is sufficient to allow species loss without significantly altering ecosystem processes is unknown. Sorely needed are experiments that test specific hypotheses on biodiversity, redundancy, and ecosystem processes as they relate to marine macrofauna.     

Effects of capability for dispersal on the evolution of diversity in antarctic benthos

The likelihood of marine invertebrates to maintain large geographic ranges is widely dependent on the ability of their early ontogenetic stages to disperse over long distances. Marine benthic invertebrates inhabiting the cold-stenothermal environment of the Southern Ocean are known for their overall reduced number of pelagic larvae, or drifting stages of any kind, when compared with organisms elsewhere in the sea. The diversity of organisms thriving in Antarctic waters is the result of evolution in situ and of the intrusion of species from surrounding seas. The reasons for a high level of endemism and a stunning diversity of benthic invertebrates found today are frequently discussed in the literature, but the mechanisms whereby diversity has been controlled over time remain largely theoretical. Here, I suggest that, indeed, early life-history patterns play a key role in defining the radiation and the speciation potential of Antarctic benthic invertebrates. In arguing this case, I synthesize the growing body of molecular studies on population connectivity in Antarctic benthic invertebrates, and compare this information with knowledge of their life histories and biogeography. I conclude that differences in early life-history patterns are key to the resilience potential of species in response to late Cenozoic glacial periods and propose that there is a direct relationship between rate of speciation and the ability of taxa to disperse.